Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00748

Orthogroup ID

OG0000372

Physical Location & Seq

Genomic Coordinates Forward (+)

8552 .. 10369

Gene Structure 1818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G015950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGATTTGGGAGTAGAAGCTGGAGTGGATGCCAAAGATTGCATCAAGATCAAGGATTCGAGAACGCGTGCTGCAACCCACGTAGTTAAAATTGACCCATTTGGGGAAGATGAGGTGGGTGGTCTACTAGCATATCTGCCTGATAAAAAACGGGAATATGTGATTGATGATGATGCTCTAAATCATGCTTCCGAGCTTTCAGTGGAAGGAAGAGATGATATCACTAATCTTGATGAGTTGGTCAAGGATTACAAAAGAAACAGAAGACGTGGAATGCTCGTATGGCTTAAACTGAAAAAGGACAAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005886 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0035371 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0071944 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1990752

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

103

Amino Acids

11.71

Weight (kDa)

5.69

Isoelectric Point (pI)

27.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000372)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g09000
rosa_chinensis	RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata	RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora	Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa	Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha	Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana	Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	124
AccII	CGCG	1 cut(s)	67
AfiI	CCNNNNNNNGG	1 cut(s)	103
AflIII	ACRYGT	1 cut(s)	65
AjiI	CACGTC	1 cut(s)	269
AluBI	AGCT	2 cut(s)	20, 196
AluI	AGCT	2 cut(s)	20, 196
ApeKI	GCWGC	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	58
BfaI	CTAG	1 cut(s)	128
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
BmgBI	CACGTC	1 cut(s)	269
BmsI	GCATC	3 cut(s)	19, 51, 163
BpiI	GAAGAC	1 cut(s)	271
BpmI	CTGGAG	1 cut(s)	42
BsaAI	YACGTR	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
BseGI	GGATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmI	GAATGC	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	48
BspFNI	CGCG	1 cut(s)	67
BssMI	GATC	1 cut(s)	48
Bst6I	CTCTTC	1 cut(s)	205
BstBAI	YACGTR	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	34
BstFNI	CGCG	1 cut(s)	67
BstKTI	GATC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	1 cut(s)	283
BstUI	CGCG	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	58
BstV2I	GAAGAC	1 cut(s)	271
BtrI	CACGTC	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	207
Cac8I	GCNNGC	1 cut(s)	69
CviAII	CATG	1 cut(s)	185
CviJI	RGCY	3 cut(s)	20, 196, 286
CviKI_1	RGCY	3 cut(s)	20, 196, 286
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	205
Eco32I	GATATC	1 cut(s)	220
EcoRV	GATATC	1 cut(s)	220
FaeI	CATG	1 cut(s)	188
FaiI	YATR	5 cut(s)	133, 159, 186, 283, 310
FatI	CATG	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	1 cut(s)	72
GsuI	CTGGAG	1 cut(s)	42
Hin1II	CATG	1 cut(s)	188
HinfI	GANTC	1 cut(s)	56
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	3 cut(s)	46, 60, 230
Hpy8I	GTNNAC	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	200
HpyCH4IV	ACGT	2 cut(s)	81, 268
HpyCH4V	TGCA	2 cut(s)	42, 74
HpyF10VI	GCNNNNNNNGC	1 cut(s)	283
HpySE526I	ACGT	2 cut(s)	81, 268
Hsp92II	CATG	1 cut(s)	188
Kzo9I	GATC	1 cut(s)	48
LpnPI	CCDG	2 cut(s)	6, 153
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	3 cut(s)	19, 51, 163
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	2 cut(s)	81, 268
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	3 cut(s)	119, 222, 276
MluCI	AATT	1 cut(s)	90
MluI	ACGCGT	1 cut(s)	65
MnlI	CCTC	1 cut(s)	106
MseI	TTAA	2 cut(s)	87, 288
Mva1269I	GAATGC	1 cut(s)	279
MvnI	CGCG	1 cut(s)	67
MwoI	GCNNNNNNNGC	1 cut(s)	283
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	1 cut(s)	188
PctI	GAATGC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	1 cut(s)	73
Ppu21I	YACGTR	1 cut(s)	82
SaqAI	TTAA	2 cut(s)	87, 288
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	1 cut(s)	48
SetI	ASST	5 cut(s)	22, 84, 117, 198, 271
SfaNI	GCATC	3 cut(s)	19, 51, 163
Sse9I	AATT	1 cut(s)	90
SspMI	CTAG	1 cut(s)	128
TaiI	ACGT	2 cut(s)	84, 271
TaqI	TCGA	1 cut(s)	59
TasI	AATT	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	2 cut(s)	87, 288
Tru9I	TTAA	2 cut(s)	87, 288
TscAI	CASTG	1 cut(s)	207
TseI	GCWGC	1 cut(s)	71
TspRI	CASTG	1 cut(s)	207
XmiI	GTMKAC	1 cut(s)	124
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.