Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000372

Physical Location & Seq

Genomic Coordinates Reverse (-)

33588431 .. 33588844

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG303600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGATAAAATGAAGGTTCATCTAGATGAAGTGACTTACAATACCCTAATGCAAGGGCGCTGCAGGGCAGGGAAAGTTGAGGAAGCTCGGGAACTTCTGGATGAGATGAAGAGAAGGGGAATTAAGCCTGATTACATTAGTTACAACACCTGCATTAGTGGACATAGTAAACAAGGTGATATGAATGATGCCTTCAAAGTTCGAGACGAGATGTTGGGTATAGGTTTCAATCCTACACTTCTAACGTACAATGCTCTTATAAAAGGTCTATGCAAAAACCAAGAAGGTGATCTTACTCAAGAGCTCCTTAAAGAAATGGTGAGCAGAGGGATTACTCCCGATGACAGCACATATTACTCTCTGATTGAGGGAATTGAGAATGTTGAGGAATTTCTCAGAAAGGGCAATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

137

Amino Acids

15.62

Weight (kDa)

5.26

Isoelectric Point (pI)

22.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	1 - 52	3.6e-09	Pentatricopeptide repeat domain
PPR_long	PF17177	3 - 88	1.4e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	6 - 37	1.4e-12	PPR repeat
PPR_2	PF13041	9 - 54	1.5e-17	PPR repeat family
PPR	PF01535	11 - 41	5e-10	PPR repeat
PPR_3	PF13812	32 - 89	1.2e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	39 - 71	1.5e-08	PPR repeat
PPR_2	PF13041	43 - 92	9.3e-16	PPR repeat family
PPR	PF01535	46 - 76	7.9e-07	PPR repeat
PPR_1	PF12854	75 - 107	1.7e-07	PPR repeat
PPR_2	PF13041	78 - 124	8.8e-13	PPR repeat family
PPR	PF01535	82 - 111	2.4e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000372)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g09000
rosa_chinensis	RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata	RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora	Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa	Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha	Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana	Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	260
AarI	CACCTGC	1 cut(s)	158
Acc36I	ACCTGC	1 cut(s)	158
AcsI	RAATTY	1 cut(s)	389
AfaI	GTAC	1 cut(s)	248
AgsI	TTSAA	2 cut(s)	196, 229
AluBI	AGCT	2 cut(s)	86, 304
AluI	AGCT	2 cut(s)	86, 304
Alw21I	GWGCWC	1 cut(s)	306
Alw26I	GTCTC	1 cut(s)	198
Ama87I	CYCGRG	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	60
ApoI	RAATTY	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	60
AsuHPI	GGTGA	3 cut(s)	188, 299, 331
AvaI	CYCGRG	1 cut(s)	87
BanII	GRGCYC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	61
BfoI	RGCGCY	1 cut(s)	61
BfuAI	ACCTGC	1 cut(s)	158
BisI	GCNGC	1 cut(s)	61
BlsI	GCNGC	1 cut(s)	62
BmeT110I	CYCGRG	1 cut(s)	87
BmsI	GCATC	1 cut(s)	178
BpuEI	CTTGAG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	409
BseXI	GCAGC	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	306
BsiHKCI	CYCGRG	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	198
BsmBI	CGTCTC	1 cut(s)	198
BsoBI	CYCGRG	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	289
BspCNI	CTCAG	1 cut(s)	408
BspHI	TCATGA	1 cut(s)	410
BspMAI	CTGCAG	1 cut(s)	65
BspMI	ACCTGC	1 cut(s)	158
BssMI	GATC	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	104
BstDEI	CTNAG	1 cut(s)	395
BstF5I	GGATG	1 cut(s)	106
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	1 cut(s)	292
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	106
BveI	ACCTGC	1 cut(s)	158
CciI	TCATGA	1 cut(s)	410
CfoI	GCGC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	1 cut(s)	411
CviJI	RGCY	3 cut(s)	86, 127, 304
CviKI_1	RGCY	3 cut(s)	86, 127, 304
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	1 cut(s)	395
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Ecl136II	GAGCTC	1 cut(s)	304
Eco24I	GRGCYC	1 cut(s)	306
Eco53kI	GAGCTC	1 cut(s)	304
Eco88I	CYCGRG	1 cut(s)	87
EcoICRI	GAGCTC	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	306
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	1 cut(s)	414
FaiI	YATR	7 cut(s)	165, 182, 221, 260, 271, 352, 412
FalI	AAGNNNNNCTT	4 cut(s)	276, 308, 291, 323
FatI	CATG	1 cut(s)	410
Fnu4HI	GCNGC	1 cut(s)	61
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	1 cut(s)	61
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	1 cut(s)	61
HaeII	RGCGCY	1 cut(s)	61
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	414
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HphI	GGTGA	3 cut(s)	188, 299, 331
Hpy166II	GTNNAC	2 cut(s)	161, 170
Hpy188I	TCNGA	2 cut(s)	363, 398
Hpy188III	TCNNGA	7 cut(s)	23, 89, 98, 203, 299, 338, 411
Hpy8I	GTNNAC	2 cut(s)	161, 170
HpyAV	CCTTC	4 cut(s)	7, 108, 202, 278
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	4 cut(s)	52, 63, 153, 273
HpyF3I	CTNAG	1 cut(s)	395
HpySE526I	ACGT	1 cut(s)	245
Hsp92II	CATG	1 cut(s)	414
HspAI	GCGC	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	1 cut(s)	309
LpnPI	CCDG	5 cut(s)	49, 54, 83, 141, 163
Lsp1109I	GCAGC	1 cut(s)	47
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	1 cut(s)	245
MaeIII	GTNAC	2 cut(s)	31, 140
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	4 cut(s)	120, 372, 389, 406
MnlI	CCTC	4 cut(s)	73, 320, 361, 379
MseI	TTAA	2 cut(s)	123, 309
MslI	CAYNNNNRTG	1 cut(s)	24
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	1 cut(s)	414
NmuCI	GTSAC	1 cut(s)	31
PagI	TCATGA	1 cut(s)	410
PaqCI	CACCTGC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	62
PsiI	TTATAA	1 cut(s)	260
Psp124BI	GAGCTC	1 cut(s)	306
PstI	CTGCAG	1 cut(s)	65
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
RseI	CAYNNNNRTG	1 cut(s)	24
SacI	GAGCTC	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	123, 309
SatI	GCNGC	1 cut(s)	61
Sau3AI	GATC	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	9 cut(s)	18, 88, 152, 178, 226, 248, 268, 289, 306
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	1 cut(s)	61
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
Sse9I	AATT	4 cut(s)	120, 372, 389, 406
SspMI	CTAG	1 cut(s)	23
SstI	GAGCTC	1 cut(s)	306
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	1 cut(s)	202
TasI	AATT	4 cut(s)	120, 372, 389, 406
Tru1I	TTAA	2 cut(s)	123, 309
Tru9I	TTAA	2 cut(s)	123, 309
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	60
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	6 cut(s)	8, 26, 42, 122, 197, 399
XapI	RAATTY	1 cut(s)	389
XbaI	TCTAGA	1 cut(s)	22
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.