Rh4AG043200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000372
Physical Location & Seq
Forward (+)
9002420 .. 9002725
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG043200.1

Sequence Viewer

Length: 306 bp
ATGTCAGATTTCCTTTGTTTTTTTTACTTCAACAATAAAACCTGGGCTTACCTTGATGGTGAGGTCGAGAGGGAGAGCCCAGGAGATGGAGTTGTGCTTGGAGGCTCGTCGTCTCGCCGAGATCTTACCGGCCTCGAGGAGCACCGATCTCAACTGCAGGGCGCGATCAATGAGCTTGATCTGATCGGTGTCGGAGTCACGGGAGTCGAGGATCCACTCGAAGGAGAGATCGATGGTGAAGGGCGGCGAGTCGGAGAAGTTGAGGAAGGTCTCAAGGAGTCGCGGTCAAGGAGGTTGGGATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.18

Weight (kDa)

4.46

Isoelectric Point (pI)

67.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 134
AccB7I CCANNNNNTGG 1 cut(s) 86
AccII CGCG 2 cut(s) 164, 283
AciI CCGC 2 cut(s) 244, 283
AclWI GGATC 2 cut(s) 206, 219
AfiI CCNNNNNNNGG 2 cut(s) 86, 221
AgsI TTSAA 1 cut(s) 31
AjnI CCWGG 2 cut(s) 41, 79
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 2 cut(s) 117, 275
AlwI GGATC 2 cut(s) 206, 219
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 1 cut(s) 130
AspLEI GCGC 1 cut(s) 164
AsuHPI GGTGA 2 cut(s) 71, 248
AvaI CYCGRG 1 cut(s) 134
BamHI GGATCC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 144
BccI CCATC 4 cut(s) 50, 80, 227, 294
BciT130I CCWGG 2 cut(s) 43, 81
BcoDI GTCTC 2 cut(s) 117, 275
BfmI CTRYAG 1 cut(s) 155
BglII AGATCT 1 cut(s) 121
BisI GCNGC 1 cut(s) 245
BlsI GCNGC 1 cut(s) 246
Bme1390I CCNGG 2 cut(s) 43, 81
BmeT110I CYCGRG 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 213
BmrFI CCNGG 2 cut(s) 43, 81
BpuEI CTTGAG 1 cut(s) 257
Bsa29I ATCGAT 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 2 cut(s) 42, 79
BsaXI ACNNNNNCTCC 4 cut(s) 75, 105, 269, 299
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 221
Bse118I RCCGGY 1 cut(s) 128
BseBI CCWGG 2 cut(s) 43, 81
BseCI ATCGAT 1 cut(s) 231
BseDI CCNNGG 2 cut(s) 42, 79
BseGI GGATG 1 cut(s) 305
BseLI CCNNNNNNNGG 2 cut(s) 86, 221
BseRI GAGGAG 1 cut(s) 152
Bsh1236I CGCG 2 cut(s) 164, 283
BshFI GGCC 1 cut(s) 132
BshVI ATCGAT 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 1 cut(s) 129
BslI CCNNNNNNNGG 2 cut(s) 86, 221
BsmAI GTCTC 2 cut(s) 117, 275
BsmBI CGTCTC 1 cut(s) 117
BsnI GGCC 1 cut(s) 132
Bso31I GGTCTC 1 cut(s) 275
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 2 cut(s) 80, 144
Bsp143I GATC 7 cut(s) 121, 146, 165, 178, 183, 211, 228
BspACI CCGC 2 cut(s) 244, 283
BspANI GGCC 1 cut(s) 132
BspDI ATCGAT 1 cut(s) 231
BspFNI CGCG 2 cut(s) 164, 283
BspLI GGNNCC 1 cut(s) 213
BspMAI CTGCAG 1 cut(s) 159
BspPI GGATC 2 cut(s) 206, 219
BspTNI GGTCTC 1 cut(s) 275
BsrFI RCCGGY 1 cut(s) 128
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 42, 79
BssMI GATC 7 cut(s) 121, 146, 165, 178, 183, 211, 228
Bst2UI CCWGG 2 cut(s) 43, 81
BstF5I GGATG 1 cut(s) 305
BstFNI CGCG 2 cut(s) 164, 283
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 7 cut(s) 124, 149, 168, 181, 186, 214, 231
BstMAI GTCTC 2 cut(s) 117, 275
BstMBI GATC 7 cut(s) 121, 146, 165, 178, 183, 211, 228
BstNI CCWGG 2 cut(s) 43, 81
BstSCI CCNGG 2 cut(s) 41, 79
BstSFI CTRYAG 1 cut(s) 155
BstUI CGCG 2 cut(s) 164, 283
BstX2I RGATCY 2 cut(s) 121, 211
BstYI RGATCY 2 cut(s) 121, 211
Bsu15I ATCGAT 1 cut(s) 231
BsuRI GGCC 1 cut(s) 132
BsuTUI ATCGAT 1 cut(s) 231
BtsCI GGATG 1 cut(s) 305
CfoI GCGC 1 cut(s) 164
Cfr10I RCCGGY 1 cut(s) 128
ClaI ATCGAT 1 cut(s) 231
CviJI RGCY 5 cut(s) 47, 78, 105, 132, 175
CviKI_1 RGCY 5 cut(s) 47, 78, 105, 132, 175
DpnI GATC 7 cut(s) 123, 148, 167, 180, 185, 213, 230
DpnII GATC 7 cut(s) 121, 146, 165, 178, 183, 211, 228
Eco24I GRGCYC 1 cut(s) 80
Eco31I GGTCTC 1 cut(s) 275
Eco88I CYCGRG 1 cut(s) 134
EcoRII CCWGG 2 cut(s) 41, 79
EcoT38I GRGCYC 1 cut(s) 80
Esp3I CGTCTC 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 245
FriOI GRGCYC 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 245
GlaI GCGC 1 cut(s) 163
GluI GCNGC 1 cut(s) 245
HaeIII GGCC 1 cut(s) 132
HapII CCGG 1 cut(s) 129
HhaI GCGC 1 cut(s) 164
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HinfI GANTC 4 cut(s) 195, 204, 249, 278
HpaII CCGG 1 cut(s) 129
HphI GGTGA 2 cut(s) 71, 248
Hpy188I TCNGA 4 cut(s) 7, 183, 194, 254
Hpy188III TCNNGA 1 cut(s) 67
Hpy99I CGWCG 1 cut(s) 112
HpyAV CCTTC 3 cut(s) 215, 233, 260
HpyCH4V TGCA 1 cut(s) 157
HspAI GCGC 1 cut(s) 162
Kzo9I GATC 7 cut(s) 121, 146, 165, 178, 183, 211, 228
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 6 cut(s) 28, 55, 66, 93, 142, 143
MaeIII GTNAC 1 cut(s) 196
MalI GATC 7 cut(s) 123, 148, 167, 180, 185, 213, 230
MboI GATC 7 cut(s) 121, 146, 165, 178, 183, 211, 228
MflI RGATCY 2 cut(s) 121, 211
MhlI GDGCHC 2 cut(s) 80, 144
MlyI GAGTC 4 cut(s) 204, 213, 258, 287
MmeI TCCRAC 2 cut(s) 172, 232
MnlI CCTC 8 cut(s) 55, 63, 95, 130, 143, 202, 256, 285
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 2 cut(s) 43, 81
MvaI CCWGG 2 cut(s) 43, 81
MvnI CGCG 2 cut(s) 164, 283
NdeII GATC 7 cut(s) 121, 146, 165, 178, 183, 211, 228
NlaIV GGNNCC 1 cut(s) 213
NmeAIII GCCGAG 1 cut(s) 143
NmuCI GTSAC 1 cut(s) 196
PaeR7I CTCGAG 1 cut(s) 134
PflMI CCANNNNNTGG 1 cut(s) 86
PkrI GCNGC 1 cut(s) 246
PleI GAGTC 4 cut(s) 203, 212, 257, 286
PpsI GAGTC 4 cut(s) 203, 212, 257, 286
Psp6I CCWGG 2 cut(s) 41, 79
PspGI CCWGG 2 cut(s) 41, 79
PspN4I GGNNCC 1 cut(s) 213
PspXI VCTCGAGB 1 cut(s) 134
PstI CTGCAG 1 cut(s) 159
PsuI RGATCY 2 cut(s) 121, 211
SatI GCNGC 1 cut(s) 245
Sau3AI GATC 7 cut(s) 121, 146, 165, 178, 183, 211, 228
SchI GAGTC 4 cut(s) 204, 213, 258, 287
ScrFI CCNGG 2 cut(s) 43, 81
SduI GDGCHC 2 cut(s) 80, 144
SetI ASST 6 cut(s) 44, 54, 66, 177, 271, 296
SfcI CTRYAG 1 cut(s) 155
Sfr274I CTCGAG 1 cut(s) 134
SlaI CTCGAG 1 cut(s) 134
SmlI CTYRAG 2 cut(s) 134, 272
SmoI CTYRAG 2 cut(s) 134, 272
SsiI CCGC 2 cut(s) 244, 283
StyD4I CCNGG 2 cut(s) 41, 79
TaqI TCGA 5 cut(s) 66, 135, 207, 219, 231
TauI GCSGC 1 cut(s) 247
TseFI GTSAC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 196
Van91I CCANNNNNTGG 1 cut(s) 86
XhoI CTCGAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.