Rh6CG246600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000372
Physical Location & Seq
Reverse (-)
41598232 .. 41610258
12027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG246600.1

Sequence Viewer

Length: 351 bp
ATGACTTTAGCTTCAGAAAGTGTAACCATGGTTATTGAAATGGGCACTAGTGGTTCAAGGCCTAGCAGTGGGGTGCTAGATGAAGACTATGAGAAACATAAGGAGGGTGTGCAGGCTAGTGGTGTGCAAGGATTAGACTATGAGAAAGAGATACACTTGATGGACTATCTTCAAACATTCGGGGTTCACGGATCTGAGTTGAGTGAGGATGGGGAGACAAGTGAGGATGGTGATTATGATTCGGAGTTCGATGATGAAGAATATGAGCATTATGGTACTGATAAGGATGACTGGTTGGAAGAAGCCGATTTGGATGAGGCTACAAAGGCAAAAGGTTCAGGGATTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.84

Weight (kDa)

4.05

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 199
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 3 cut(s) 38, 57, 173
AhlI ACTAGT 1 cut(s) 47
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 209
AlwI GGATC 1 cut(s) 199
AoxI GGCC 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 242
BaeGI GKGCMC 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 90
BccI CCATC 3 cut(s) 154, 203, 221
BcoDI GTCTC 1 cut(s) 209
BcuI ACTAGT 1 cut(s) 47
BfaI CTAG 4 cut(s) 48, 63, 77, 117
BpiI GAAGAC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 296
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 4 cut(s) 214, 232, 292, 319
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 296
BseSI GKGCMC 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 131
BshFI GGCC 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 209
BsnI GGCC 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 47
Bsp143I GATC 1 cut(s) 191
Bsp19I CCATGG 1 cut(s) 27
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 1 cut(s) 187
BspPI GGATC 1 cut(s) 199
BsrI ACTGG 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 1 cut(s) 191
BssT1I CCWWGG 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 195
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 4 cut(s) 214, 232, 292, 319
BstKTI GATC 1 cut(s) 194
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 1 cut(s) 191
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstSLI GKGCMC 1 cut(s) 47
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BsuRI GGCC 1 cut(s) 61
BtgI CCRYGG 1 cut(s) 27
BtsCI GGATG 4 cut(s) 214, 232, 292, 319
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 276
CviAII CATG 1 cut(s) 28
CviJI RGCY 5 cut(s) 11, 61, 116, 305, 320
CviKI_1 RGCY 5 cut(s) 11, 61, 116, 305, 320
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 1 cut(s) 195
DpnI GATC 1 cut(s) 193
DpnII GATC 1 cut(s) 191
Eco130I CCWWGG 1 cut(s) 27
Eco147I AGGCCT 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 1 cut(s) 31
FaiI YATR 7 cut(s) 29, 90, 99, 141, 237, 264, 273
FatI CATG 1 cut(s) 27
FokI GGATG 4 cut(s) 221, 239, 299, 326
FspBI CTAG 4 cut(s) 48, 63, 77, 117
HaeIII GGCC 1 cut(s) 61
Hin1II CATG 1 cut(s) 31
HinfI GANTC 1 cut(s) 239
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 3 cut(s) 16, 196, 244
Hpy8I GTNNAC 1 cut(s) 187
HpyCH4V TGCA 2 cut(s) 112, 127
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpyF3I CTNAG 1 cut(s) 195
Hsp92II CATG 1 cut(s) 31
Kzo9I GATC 1 cut(s) 191
LpnPI CCDG 3 cut(s) 98, 277, 324
MaeI CTAG 4 cut(s) 48, 63, 77, 117
MaeIII GTNAC 1 cut(s) 22
MalI GATC 1 cut(s) 193
MboI GATC 1 cut(s) 191
MboII GAAGA 4 cut(s) 95, 161, 269, 311
MflI RGATCY 1 cut(s) 191
MhlI GDGCHC 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 4 cut(s) 97, 199, 217, 310
MwoI GCNNNNNNNGC 1 cut(s) 326
NcoI CCATGG 1 cut(s) 27
NdeII GATC 1 cut(s) 191
NlaIII CATG 1 cut(s) 31
PceI AGGCCT 1 cut(s) 61
PfeI GAWTC 1 cut(s) 239
PsuI RGATCY 1 cut(s) 191
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
Sau3AI GATC 1 cut(s) 191
SduI GDGCHC 1 cut(s) 47
SetI ASST 2 cut(s) 13, 337
SpeI ACTAGT 1 cut(s) 47
SseBI AGGCCT 1 cut(s) 61
SspMI CTAG 4 cut(s) 48, 63, 77, 117
StuI AGGCCT 1 cut(s) 61
StyI CCWWGG 1 cut(s) 27
TaqI TCGA 1 cut(s) 249
TfiI GAWTC 1 cut(s) 239
TscAI CASTG 1 cut(s) 73
TspDTI ATGAA 2 cut(s) 96, 270
TspGWI ACGGA 1 cut(s) 204
TspRI CASTG 1 cut(s) 73
XspI CTAG 4 cut(s) 48, 63, 77, 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.