Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000372

Physical Location & Seq

Genomic Coordinates Reverse (-)

47407507 .. 47409516

Gene Structure 2010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0357900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCGACCCTGCAGAACTCACCTTCACTCCACAGGACCCTTGTGCTCAACTCCTTCACTAAGGTACAAAATAAGCAAAGCAATTCACATTGCTATAGAAGAAGCGTGTCGTTTTTGGTAAGAGCAGAACAAGCTTCATCGTCTTCAGCATGCTCTCCTTCTCAAGATAGATCCGGGAGACGCCAGGTACTAGCTGCAGGGACAATTGCTTCTTGGGCTTCTCTCATGAACCAACATTCTGTATCATTTGCTGCAGAAAATAAAAAGAATTTTCAGCTTGTTACGGACAAGAAAGACGGATACGAATTTGTCTACCCTTTTGGGTGGCAGGAAGTTTCCATTGAAGGCCAAGACAAGGTATTCAAGGATGTGATTGAGCCACTAGAAACTGCGAGTGTGACTCTCTTCCCAACTGTCAAGGAAGACATCAAGGAATTTGGGACTCCACAAGAGGTGGCGGAGACTTTGATCAAGAAGGTTCTGGCTCCTCCTACCCAGAAAACAAAGCTGATTGAGGCATCAGAGCATGAGATTGATGGGAAAACATATTACACTTTTGAGTTTGTCGCCAAGGCTCCAAACTTTACTCGCCACGCTCTAAGCACAATATCTGTTAACAATGGTAAATTCTACACATTGACGACGGGAGCCAACGAAAGGAGGTGGGGGAAGATGAAAGAAAAATTACACACCATAGTTGATTCCTTTAAACTTTTCAAAGTCTATGAAGGCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

245

Amino Acids

27.6

Weight (kDa)

9.18

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbP	PF01789	89 - 237	3.8e-55	PsbP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000372)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g09000
rosa_chinensis	RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata	RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora	Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa	Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha	Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana	Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	312
AciI	CCGC	1 cut(s)	458
AclWI	GGATC	1 cut(s)	165
AcsI	RAATTY	4 cut(s)	268, 305, 434, 626
AcuI	CTGAAG	1 cut(s)	129
AcyI	GRCGYC	1 cut(s)	181
AfaI	GTAC	2 cut(s)	66, 189
AfiI	CCNNNNNNNGG	2 cut(s)	355, 657
AgsI	TTSAA	3 cut(s)	344, 364, 718
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	4 cut(s)	134, 194, 277, 508
AluI	AGCT	4 cut(s)	134, 194, 277, 508
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	2 cut(s)	172, 455
AlwI	GGATC	1 cut(s)	165
AoxI	GGCC	1 cut(s)	346
ApeKI	GCWGC	2 cut(s)	194, 251
ApoI	RAATTY	4 cut(s)	268, 305, 434, 626
AspS9I	GGNCC	1 cut(s)	36
AsuC2I	CCSGG	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	12
AvaII	GGWCC	1 cut(s)	36
BbsI	GAAGAC	2 cut(s)	135, 429
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	181, 238
BccI	CCATC	1 cut(s)	530
BciT130I	CCWGG	1 cut(s)	185
BciVI	GTATCC	1 cut(s)	293
BclI	TGATCA	1 cut(s)	468
BcnI	CCSGG	1 cut(s)	175
BcoDI	GTCTC	2 cut(s)	172, 455
BfaI	CTAG	2 cut(s)	191, 383
BfmI	CTRYAG	4 cut(s)	11, 94, 195, 252
BfuI	GTATCC	1 cut(s)	293
BisI	GCNGC	2 cut(s)	195, 252
BlsI	GCNGC	2 cut(s)	196, 253
Bme1390I	CCNGG	2 cut(s)	175, 185
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	4 cut(s)	38, 486, 576, 649
BmrFI	CCNGG	2 cut(s)	175, 185
BmsI	GCATC	1 cut(s)	527
BpiI	GAAGAC	2 cut(s)	135, 429
BplI	GAGNNNNNCTC	2 cut(s)	385, 417
BpuEI	CTTGAG	1 cut(s)	147
BpuMI	CCSGG	1 cut(s)	175
BsaHI	GRCGYC	1 cut(s)	181
BsaJI	CCNNGG	1 cut(s)	570
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	2 cut(s)	355, 657
Bse3DI	GCAATG	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	1 cut(s)	570
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	2 cut(s)	355, 657
BseMI	GCAATG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	477
BseXI	GCAGC	2 cut(s)	181, 238
BshFI	GGCC	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	174
BslFI	GGGAC	2 cut(s)	214, 454
BslI	CCNNNNNNNGG	2 cut(s)	355, 657
BsmAI	GTCTC	2 cut(s)	172, 455
BsmBI	CGTCTC	1 cut(s)	172
BsmFI	GGGAC	2 cut(s)	214, 454
BsnI	GGCC	1 cut(s)	348
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	170, 468
BspACI	CCGC	1 cut(s)	458
BspANI	GGCC	1 cut(s)	348
BspHI	TCATGA	1 cut(s)	225
BspLI	GGNNCC	4 cut(s)	38, 486, 576, 649
BspMAI	CTGCAG	3 cut(s)	15, 199, 256
BspPI	GGATC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	570
BssMI	GATC	2 cut(s)	170, 468
BssNI	GRCGYC	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	570
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	1 cut(s)	410
BstACI	GRCGYC	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	2 cut(s)	60, 599
BstF5I	GGATG	1 cut(s)	373
BstKTI	GATC	2 cut(s)	173, 471
BstMAI	GTCTC	2 cut(s)	172, 455
BstMBI	GATC	2 cut(s)	170, 468
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 215
BstNI	CCWGG	1 cut(s)	185
BstNSI	RCATGY	1 cut(s)	153
BstSCI	CCNGG	2 cut(s)	173, 183
BstSFI	CTRYAG	4 cut(s)	11, 94, 195, 252
BstV1I	GCAGC	2 cut(s)	181, 238
BstV2I	GAAGAC	2 cut(s)	135, 429
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
BsuI	GTATCC	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	373
Cac8I	GCNNGC	1 cut(s)	151
CciI	TCATGA	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	36
CseI	GACGC	1 cut(s)	189
Csp6I	GTAC	2 cut(s)	65, 188
CviAII	CATG	3 cut(s)	150, 226, 527
CviQI	GTAC	2 cut(s)	65, 188
DdeI	CTNAG	2 cut(s)	60, 599
DpnI	GATC	2 cut(s)	172, 470
DpnII	GATC	2 cut(s)	170, 468
DraI	TTTAAA	1 cut(s)	709
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
EciI	GGCGGA	1 cut(s)	473
Eco130I	CCWWGG	1 cut(s)	570
Eco47I	GGWCC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	129
EcoO109I	RGGNCCY	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	570
Esp3I	CGTCTC	1 cut(s)	172
FaeI	CATG	3 cut(s)	153, 229, 530
FaiI	YATR	7 cut(s)	96, 151, 227, 528, 547, 695, 726
FaqI	GGGAC	2 cut(s)	214, 454
FatI	CATG	3 cut(s)	149, 225, 526
FbaI	TGATCA	1 cut(s)	468
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	2 cut(s)	195, 252
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	2 cut(s)	195, 252
FspBI	CTAG	2 cut(s)	191, 383
GluI	GCNGC	2 cut(s)	195, 252
HaeIII	GGCC	1 cut(s)	348
HapII	CCGG	1 cut(s)	174
HgaI	GACGC	1 cut(s)	189
Hin1I	GRCGYC	1 cut(s)	181
Hin1II	CATG	3 cut(s)	153, 229, 530
HincII	GTYRAC	1 cut(s)	616
HindII	GTYRAC	1 cut(s)	616
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	3 cut(s)	400, 442, 701
HpaI	GTTAAC	1 cut(s)	616
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	1 cut(s)	12
Hpy166II	GTNNAC	2 cut(s)	313, 616
Hpy188I	TCNGA	1 cut(s)	523
Hpy188III	TCNNGA	3 cut(s)	164, 226, 472
Hpy8I	GTNNAC	2 cut(s)	313, 616
Hpy99I	CGWCG	1 cut(s)	646
HpyAV	CCTTC	6 cut(s)	33, 64, 168, 338, 469, 722
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4V	TGCA	3 cut(s)	13, 197, 254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 215
HpyF3I	CTNAG	2 cut(s)	60, 599
Hsp92I	GRCGYC	1 cut(s)	181
Hsp92II	CATG	3 cut(s)	153, 229, 530
Ksp22I	TGATCA	1 cut(s)	468
KspAI	GTTAAC	1 cut(s)	616
Kzo9I	GATC	2 cut(s)	170, 468
LmnI	GCTCC	3 cut(s)	490, 580, 647
LpnPI	CCDG	9 cut(s)	19, 23, 170, 183, 187, 197, 314, 467, 509
Lsp1109I	GCAGC	2 cut(s)	181, 238
LweI	GCATC	1 cut(s)	527
MaeI	CTAG	2 cut(s)	191, 383
MaeIII	GTNAC	2 cut(s)	280, 397
MalI	GATC	2 cut(s)	172, 470
MboI	GATC	2 cut(s)	170, 468
MboII	GAAGA	5 cut(s)	111, 135, 397, 434, 682
MfeI	CAATTG	1 cut(s)	204
MflI	RGATCY	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	8 cut(s)	82, 204, 268, 305, 434, 626, 683, 733
MlyI	GAGTC	2 cut(s)	394, 436
MnlI	CCTC	4 cut(s)	445, 498, 508, 654
MseI	TTAA	2 cut(s)	615, 708
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	2 cut(s)	175, 185
MunI	CAATTG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	2 cut(s)	131, 215
NciI	CCSGG	1 cut(s)	175
NdeII	GATC	2 cut(s)	170, 468
NlaIII	CATG	3 cut(s)	153, 229, 530
NlaIV	GGNNCC	4 cut(s)	38, 486, 576, 649
NmuCI	GTSAC	1 cut(s)	397
NspI	RCATGY	1 cut(s)	153
PaeI	GCATGC	1 cut(s)	153
PagI	TCATGA	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	701
PfoI	TCCNGGA	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	196, 253
PleI	GAGTC	2 cut(s)	394, 436
PpsI	GAGTC	2 cut(s)	394, 436
PpuMI	RGGWCCY	1 cut(s)	36
Psp5II	RGGWCCY	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	4 cut(s)	38, 486, 576, 649
PspPI	GGNCC	1 cut(s)	36
PspPPI	RGGWCCY	1 cut(s)	36
PstI	CTGCAG	3 cut(s)	15, 199, 256
PsuI	RGATCY	1 cut(s)	170
RsaI	GTAC	2 cut(s)	66, 189
RsaNI	GTAC	2 cut(s)	65, 188
SaqAI	TTAA	2 cut(s)	615, 708
SatI	GCNGC	2 cut(s)	195, 252
Sau3AI	GATC	2 cut(s)	170, 468
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	2 cut(s)	394, 436
ScrFI	CCNGG	2 cut(s)	175, 185
SduI	GDGCHC	1 cut(s)	48
SfaNI	GCATC	1 cut(s)	527
SfcI	CTRYAG	4 cut(s)	11, 94, 195, 252
SinI	GGWCC	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	162
SmoI	CTYRAG	1 cut(s)	162
SphI	GCATGC	1 cut(s)	153
Sse9I	AATT	8 cut(s)	82, 204, 268, 305, 434, 626, 683, 733
SsiI	CCGC	1 cut(s)	458
SspMI	CTAG	2 cut(s)	191, 383
StyD4I	CCNGG	2 cut(s)	173, 183
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	1 cut(s)	415
TasI	AATT	8 cut(s)	82, 204, 268, 305, 434, 626, 683, 733
TfiI	GAWTC	1 cut(s)	701
Tru1I	TTAA	2 cut(s)	615, 708
Tru9I	TTAA	2 cut(s)	615, 708
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	2 cut(s)	194, 251
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	3 cut(s)	126, 242, 689
TspGWI	ACGGA	2 cut(s)	299, 312
VpaK11BI	GGWCC	1 cut(s)	36
XapI	RAATTY	4 cut(s)	268, 305, 434, 626
XceI	RCATGY	1 cut(s)	153
XmiI	GTMKAC	1 cut(s)	312
XspI	CTAG	2 cut(s)	191, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.