RLG00000031951

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000372
Physical Location & Seq
Forward (+)
9775413 .. 9776916
1504 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031951

Sequence Viewer

Length: 363 bp
ATGCAGCAAGGATTAAATAGTTGTCTTTGGAGTGTCTCGATTGCTTATACAGAGCTATTACTTCCTGATTCCTATAAAATTCGCGGCGGTATATATATATGGGCTTACCTTGATGGTGAGGTCGAGAGGGAGAGCCCAGGAGATGGAGTTGTGCTTGGAGGCTCGTCGTCTCGTCGAGCTCTTACCGGCCTCGAGGAGCACCGATCTCAACTGCAGGGCGCAATCAATGAGCTTGATCTGATCAGTGTCGGAGTCACGGGAGTCGAGGATCCACTCGAAGGAGAGATCGATGGTGAAGGGCGGCGAGTCGGAGAAGTCGAGGAAGATCTCAAGGAGTCGCGGTCAAGGAGGTTGGGATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.18

Weight (kDa)

4.5

Isoelectric Point (pI)

63.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 191
AccB7I CCANNNNNTGG 1 cut(s) 143
AccII CGCG 2 cut(s) 84, 340
AciI CCGC 4 cut(s) 84, 87, 301, 340
AclWI GGATC 2 cut(s) 263, 276
AcsI RAATTY 1 cut(s) 78
AfiI CCNNNNNNNGG 2 cut(s) 143, 278
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 3 cut(s) 55, 179, 232
AluI AGCT 3 cut(s) 55, 179, 232
Alw21I GWGCWC 2 cut(s) 181, 201
Alw26I GTCTC 2 cut(s) 40, 174
AlwI GGATC 2 cut(s) 263, 276
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 78
AspLEI GCGC 1 cut(s) 221
AsuHPI GGTGA 2 cut(s) 128, 305
AvaI CYCGRG 1 cut(s) 191
BamHI GGATCC 1 cut(s) 268
BanII GRGCYC 2 cut(s) 137, 181
Bbv12I GWGCWC 2 cut(s) 181, 201
BbvI GCAGC 1 cut(s) 16
BccI CCATC 4 cut(s) 107, 137, 284, 351
BciT130I CCWGG 1 cut(s) 138
BclI TGATCA 1 cut(s) 240
BcoDI GTCTC 2 cut(s) 40, 174
BfmI CTRYAG 1 cut(s) 212
BglII AGATCT 1 cut(s) 325
BisI GCNGC 3 cut(s) 5, 85, 302
BlsI GCNGC 3 cut(s) 6, 86, 303
Bme1390I CCNGG 1 cut(s) 138
BmeT110I CYCGRG 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 314
Bsa29I ATCGAT 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 136
BsaXI ACNNNNNCTCC 4 cut(s) 132, 162, 326, 356
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 278
Bse118I RCCGGY 1 cut(s) 185
BseBI CCWGG 1 cut(s) 138
BseCI ATCGAT 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 1 cut(s) 362
BseLI CCNNNNNNNGG 2 cut(s) 143, 278
BseRI GAGGAG 1 cut(s) 209
BseXI GCAGC 1 cut(s) 16
Bsh1236I CGCG 2 cut(s) 84, 340
BshFI GGCC 1 cut(s) 189
BshVI ATCGAT 1 cut(s) 288
BsiHKAI GWGCWC 2 cut(s) 181, 201
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 1 cut(s) 186
BslI CCNNNNNNNGG 2 cut(s) 143, 278
BsmAI GTCTC 2 cut(s) 40, 174
BsmBI CGTCTC 1 cut(s) 174
BsnI GGCC 1 cut(s) 189
BsoBI CYCGRG 1 cut(s) 191
Bsp1286I GDGCHC 3 cut(s) 137, 181, 201
Bsp143I GATC 6 cut(s) 203, 235, 240, 268, 285, 325
BspACI CCGC 4 cut(s) 84, 87, 301, 340
BspANI GGCC 1 cut(s) 189
BspDI ATCGAT 1 cut(s) 288
BspFNI CGCG 2 cut(s) 84, 340
BspLI GGNNCC 1 cut(s) 270
BspMAI CTGCAG 1 cut(s) 216
BspPI GGATC 2 cut(s) 263, 276
BsrFI RCCGGY 1 cut(s) 185
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 6 cut(s) 203, 235, 240, 268, 285, 325
Bst2UI CCWGG 1 cut(s) 138
BstF5I GGATG 1 cut(s) 362
BstFNI CGCG 2 cut(s) 84, 340
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 6 cut(s) 206, 238, 243, 271, 288, 328
BstMAI GTCTC 2 cut(s) 40, 174
BstMBI GATC 6 cut(s) 203, 235, 240, 268, 285, 325
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 136
BstSFI CTRYAG 1 cut(s) 212
BstUI CGCG 2 cut(s) 84, 340
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 2 cut(s) 268, 325
BstYI RGATCY 2 cut(s) 268, 325
Bsu15I ATCGAT 1 cut(s) 288
BsuRI GGCC 1 cut(s) 189
BsuTUI ATCGAT 1 cut(s) 288
BtsCI GGATG 1 cut(s) 362
BtsIMutI CAGTG 1 cut(s) 250
CfoI GCGC 1 cut(s) 221
Cfr10I RCCGGY 1 cut(s) 185
ClaI ATCGAT 1 cut(s) 288
CviJI RGCY 7 cut(s) 55, 104, 135, 162, 179, 189, 232
CviKI_1 RGCY 7 cut(s) 55, 104, 135, 162, 179, 189, 232
DpnI GATC 6 cut(s) 205, 237, 242, 270, 287, 327
DpnII GATC 6 cut(s) 203, 235, 240, 268, 285, 325
Ecl136II GAGCTC 1 cut(s) 179
Eco24I GRGCYC 2 cut(s) 137, 181
Eco53kI GAGCTC 1 cut(s) 179
Eco88I CYCGRG 1 cut(s) 191
EcoICRI GAGCTC 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 136
EcoT38I GRGCYC 2 cut(s) 137, 181
Esp3I CGTCTC 1 cut(s) 174
FaiI YATR 7 cut(s) 48, 75, 92, 94, 96, 98, 100
FbaI TGATCA 1 cut(s) 240
Fnu4HI GCNGC 3 cut(s) 5, 85, 302
FriOI GRGCYC 2 cut(s) 137, 181
Fsp4HI GCNGC 3 cut(s) 5, 85, 302
GlaI GCGC 1 cut(s) 220
GluI GCNGC 3 cut(s) 5, 85, 302
HaeIII GGCC 1 cut(s) 189
HapII CCGG 1 cut(s) 186
HhaI GCGC 1 cut(s) 221
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HinfI GANTC 5 cut(s) 68, 252, 261, 306, 335
HpaII CCGG 1 cut(s) 186
HphI GGTGA 2 cut(s) 128, 305
Hpy188I TCNGA 3 cut(s) 240, 251, 311
Hpy188III TCNNGA 3 cut(s) 37, 65, 124
Hpy99I CGWCG 2 cut(s) 169, 177
HpyAV CCTTC 2 cut(s) 272, 290
HpyCH4V TGCA 2 cut(s) 4, 214
HspAI GCGC 1 cut(s) 219
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 6 cut(s) 203, 235, 240, 268, 285, 325
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 5 cut(s) 78, 123, 150, 199, 200
Lsp1109I GCAGC 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 253
MalI GATC 6 cut(s) 205, 237, 242, 270, 287, 327
MboI GATC 6 cut(s) 203, 235, 240, 268, 285, 325
MboII GAAGA 1 cut(s) 335
MflI RGATCY 2 cut(s) 268, 325
MhlI GDGCHC 3 cut(s) 137, 181, 201
MluCI AATT 1 cut(s) 78
MlyI GAGTC 4 cut(s) 261, 270, 315, 344
MmeI TCCRAC 2 cut(s) 229, 289
MnlI CCTC 8 cut(s) 112, 120, 152, 187, 200, 259, 313, 342
MseI TTAA 1 cut(s) 14
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 138
MvnI CGCG 2 cut(s) 84, 340
NdeII GATC 6 cut(s) 203, 235, 240, 268, 285, 325
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 1 cut(s) 253
PaeR7I CTCGAG 1 cut(s) 191
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PfeI GAWTC 1 cut(s) 68
PflMI CCANNNNNTGG 1 cut(s) 143
PkrI GCNGC 3 cut(s) 6, 86, 303
PleI GAGTC 4 cut(s) 260, 269, 314, 343
PpsI GAGTC 4 cut(s) 260, 269, 314, 343
Psp124BI GAGCTC 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 270
PspXI VCTCGAGB 1 cut(s) 191
PstI CTGCAG 1 cut(s) 216
PsuI RGATCY 2 cut(s) 268, 325
SacI GAGCTC 1 cut(s) 181
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 3 cut(s) 5, 85, 302
Sau3AI GATC 6 cut(s) 203, 235, 240, 268, 285, 325
SchI GAGTC 4 cut(s) 261, 270, 315, 344
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 3 cut(s) 137, 181, 201
SetI ASST 6 cut(s) 57, 111, 123, 181, 234, 353
SfcI CTRYAG 1 cut(s) 212
Sfr274I CTCGAG 1 cut(s) 191
SlaI CTCGAG 1 cut(s) 191
SmlI CTYRAG 2 cut(s) 191, 329
SmoI CTYRAG 2 cut(s) 191, 329
Sse9I AATT 1 cut(s) 78
SsiI CCGC 4 cut(s) 84, 87, 301, 340
SstI GAGCTC 1 cut(s) 181
StyD4I CCNGG 1 cut(s) 136
TaqI TCGA 8 cut(s) 38, 123, 175, 192, 264, 276, 288, 318
TasI AATT 1 cut(s) 78
TauI GCSGC 2 cut(s) 87, 304
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 253
TspRI CASTG 1 cut(s) 250
Van91I CCANNNNNTGG 1 cut(s) 143
XapI RAATTY 1 cut(s) 78
XhoI CTCGAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.