Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000372

Physical Location & Seq

Genomic Coordinates Reverse (-)

42204040 .. 42206225

Gene Structure 2186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G027110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAAGGTTGCAGTCTCCGGGAACTGCTCCATTATTAGCAGCTTGCCGTCGCGGTACTCGAAGAGGAAGAGCAACAGAGCAGTATACCAAATTATGCACTGGAGCACGATGACCTGGACCATAAGGCTGCCGGACTCCGGGATTTGGTATTCGTACATGGCGATCAACAAAGGAATCCCTATGACCAGAGTTGCTATGAGTGTCGATGATATTGTCACTTATGGAGCCAAGCCATTATTTTTCCTTGATTACTTTGCTACAAGCCGCCTTGATGTTGATCTTGCTGAAAAGGAGTTCTGTAGATTCATGAAAGAACATGGATGGTTGGATGGAAAGGTTGACGCTTTGAAGTATCTTGTTTCACACTTCCAACTTTACTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

127

Amino Acids

14.79

Weight (kDa)

9.27

Isoelectric Point (pI)

18.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000372)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g09000
rosa_chinensis	RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata	RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora	Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa	Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha	Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana	Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	1 cut(s)	52
AciI	CCGC	2 cut(s)	52, 265
AfaI	GTAC	2 cut(s)	56, 155
AfiI	CCNNNNNNNGG	2 cut(s)	137, 144
AgsI	TTSAA	1 cut(s)	349
AjnI	CCWGG	1 cut(s)	113
AluBI	AGCT	1 cut(s)	42
AluI	AGCT	1 cut(s)	42
Alw21I	GWGCWC	1 cut(s)	107
Alw26I	GTCTC	1 cut(s)	19
ApeKI	GCWGC	2 cut(s)	39, 127
AspS9I	GGNCC	1 cut(s)	117
AsuC2I	CCSGG	2 cut(s)	19, 139
AvaII	GGWCC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	107
BbvI	GCAGC	2 cut(s)	51, 114
BccI	CCATC	2 cut(s)	315, 323
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	115
BcnI	CCSGG	2 cut(s)	19, 139
BcoDI	GTCTC	1 cut(s)	19
BfmI	CTRYAG	1 cut(s)	298
BisI	GCNGC	3 cut(s)	40, 128, 265
BlsI	GCNGC	3 cut(s)	41, 129, 266
Bme1390I	CCNGG	3 cut(s)	19, 115, 139
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	3 cut(s)	19, 115, 139
BpmI	CTGGAG	1 cut(s)	121
BpuMI	CCSGG	2 cut(s)	19, 139
BsaBI	GATNNNNATC	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 144
Bse1I	ACTGG	2 cut(s)	104, 383
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	115
BseGI	GGATG	2 cut(s)	326, 334
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	2 cut(s)	137, 144
BseNI	ACTGG	2 cut(s)	104, 383
BseXI	GCAGC	2 cut(s)	51, 114
Bsh1236I	CGCG	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	107
BsiSI	CCGG	3 cut(s)	18, 131, 138
BslI	CCNNNNNNNGG	2 cut(s)	137, 144
BsmAI	GTCTC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	2 cut(s)	162, 277
BspACI	CCGC	2 cut(s)	52, 265
BspFNI	CGCG	1 cut(s)	52
BspHI	TCATGA	1 cut(s)	306
BspLI	GGNNCC	1 cut(s)	226
BspQI	GCTCTTC	1 cut(s)	62
BsrI	ACTGG	2 cut(s)	104, 383
BssMI	GATC	2 cut(s)	162, 277
BssNAI	GTATAC	1 cut(s)	85
Bst1107I	GTATAC	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	115
Bst6I	CTCTTC	2 cut(s)	56, 62
BstC8I	GCNNGC	1 cut(s)	44
BstF5I	GGATG	2 cut(s)	326, 334
BstFNI	CGCG	1 cut(s)	52
BstKTI	GATC	2 cut(s)	165, 280
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	2 cut(s)	162, 277
BstNI	CCWGG	1 cut(s)	115
BstSCI	CCNGG	3 cut(s)	17, 113, 137
BstSFI	CTRYAG	1 cut(s)	298
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	2 cut(s)	51, 114
BstZ17I	GTATAC	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	326, 334
BtsIMutI	CAGTG	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	44
CciI	TCATGA	1 cut(s)	306
Cfr13I	GGNCC	1 cut(s)	117
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	2 cut(s)	55, 154
CviAII	CATG	3 cut(s)	157, 307, 317
CviJI	RGCY	5 cut(s)	42, 127, 227, 232, 264
CviKI_1	RGCY	5 cut(s)	42, 127, 227, 232, 264
CviQI	GTAC	2 cut(s)	55, 154
DpnI	GATC	2 cut(s)	164, 279
DpnII	GATC	2 cut(s)	162, 277
Eam1104I	CTCTTC	2 cut(s)	56, 62
EarI	CTCTTC	2 cut(s)	56, 62
Eco47I	GGWCC	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	113
FaeI	CATG	3 cut(s)	160, 310, 320
FaiI	YATR	9 cut(s)	85, 95, 122, 158, 182, 197, 222, 308, 318
FatI	CATG	3 cut(s)	156, 306, 316
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	3 cut(s)	40, 128, 265
FokI	GGATG	2 cut(s)	333, 341
Fsp4HI	GCNGC	3 cut(s)	40, 128, 265
GluI	GCNGC	3 cut(s)	40, 128, 265
GsuI	CTGGAG	1 cut(s)	121
HapII	CCGG	3 cut(s)	18, 131, 138
HgaI	GACGC	1 cut(s)	350
Hin1II	CATG	3 cut(s)	160, 310, 320
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HinfI	GANTC	3 cut(s)	134, 174, 303
HpaII	CCGG	3 cut(s)	18, 131, 138
Hpy166II	GTNNAC	2 cut(s)	85, 340
Hpy188III	TCNNGA	1 cut(s)	307
Hpy8I	GTNNAC	2 cut(s)	85, 340
Hpy99I	CGWCG	1 cut(s)	52
HpyCH4V	TGCA	2 cut(s)	11, 97
Hsp92II	CATG	3 cut(s)	160, 310, 320
Kzo9I	GATC	2 cut(s)	162, 277
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	3 cut(s)	32, 102, 224
LpnPI	CCDG	8 cut(s)	31, 85, 100, 127, 144, 151, 199, 364
Lsp1109I	GCAGC	2 cut(s)	51, 114
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	2 cut(s)	164, 279
MboI	GATC	2 cut(s)	162, 277
MboII	GAAGA	2 cut(s)	73, 79
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	1 cut(s)	57
MspI	CCGG	3 cut(s)	18, 131, 138
MspR9I	CCNGG	3 cut(s)	19, 115, 139
MvaI	CCWGG	1 cut(s)	115
MvnI	CGCG	1 cut(s)	52
NciI	CCSGG	2 cut(s)	19, 139
NdeII	GATC	2 cut(s)	162, 277
NlaIII	CATG	3 cut(s)	160, 310, 320
NlaIV	GGNNCC	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	214
PagI	TCATGA	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	62
PcsI	WCGNNNNNNNCGW	2 cut(s)	56, 158
PfeI	GAWTC	2 cut(s)	174, 303
PfoI	TCCNGGA	2 cut(s)	17, 137
PkrI	GCNGC	3 cut(s)	41, 129, 266
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	1 cut(s)	117
RsaI	GTAC	2 cut(s)	56, 155
RsaNI	GTAC	2 cut(s)	55, 154
SapI	GCTCTTC	1 cut(s)	62
SatI	GCNGC	3 cut(s)	40, 128, 265
Sau3AI	GATC	2 cut(s)	162, 277
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	3 cut(s)	19, 115, 139
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	4 cut(s)	9, 44, 116, 339
SfcI	CTRYAG	1 cut(s)	298
SinI	GGWCC	1 cut(s)	117
Sse9I	AATT	1 cut(s)	90
SsiI	CCGC	2 cut(s)	52, 265
StyD4I	CCNGG	3 cut(s)	17, 113, 137
TaqI	TCGA	2 cut(s)	59, 204
TasI	AATT	1 cut(s)	90
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	2 cut(s)	174, 303
TscAI	CASTG	1 cut(s)	104
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	2 cut(s)	39, 127
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	3 cut(s)	17, 295, 323
TspRI	CASTG	1 cut(s)	104
VpaK11BI	GGWCC	1 cut(s)	117
XmiI	GTMKAC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.