Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000372

Physical Location & Seq

Genomic Coordinates Reverse (-)

50998552 .. 51006331

Gene Structure 7780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG389400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCCTTCGCCGATATCTGCAACAAGTACGACTGATACGACGTCGACAAGTAGAAGGACTCTAACATTTCCGGCGACGATGCCTTCACTCGTCTCTAATCTGCCGTCGAGTCCGACATTGAAGCTGTTCTTTAAGTTCAGTCTCTTTCTCAGTTTCTTTCAGATTCAAACTAAAGTAGGGCTTGCTTCAAAAGAGAAAAGTACGGCATCTGCAGTTACTTTGAATGCCAAGATTCGCCGGACCAAGGCTCGATTGCTTAAAGAGGTTAAAGCAATATTGCTTGGGCAAATCTATTTTGATGTGATAGGGATAGAGAAACAAGATGGGATGAATAAGGAAGAATTCTCAAGTTATTATGATGATTTCATCGACAAATTTGAAAACTTACATGATGTCAAGTTCAGTCGTGAGAGAGAGGCAATATACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005215 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0008565 GO:0009506 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0090150 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

143

Amino Acids

16.19

Weight (kDa)

9.49

Isoelectric Point (pI)

50.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000372)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g09000
rosa_chinensis	RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata	RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora	Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa	Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha	Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana	Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	44
AcsI	RAATTY	2 cut(s)	341, 374
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	2 cut(s)	28, 202
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	5 cut(s)	121, 167, 189, 223, 380
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
Alw26I	GTCTC	2 cut(s)	97, 146
ApoI	RAATTY	2 cut(s)	341, 374
Asp700I	GAANNNNTTC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	240
AvaII	GGWCC	1 cut(s)	240
BccI	CCATC	1 cut(s)	317
BceAI	ACGGC	2 cut(s)	88, 219
BcoDI	GTCTC	2 cut(s)	97, 146
BfmI	CTRYAG	1 cut(s)	210
Bme18I	GGWCC	1 cut(s)	240
BmgT120I	GGNCC	1 cut(s)	240
BmsI	GCATC	2 cut(s)	69, 215
BpuEI	CTTGAG	1 cut(s)	331
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	1 cut(s)	333
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	163
BsiSI	CCGG	2 cut(s)	71, 238
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	2 cut(s)	97, 146
BsmBI	CGTCTC	1 cut(s)	97
BsmI	GAATGC	1 cut(s)	229
BspCNI	CTCAG	1 cut(s)	162
BspMAI	CTGCAG	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	243
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	243
BstACI	GRCGYC	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	333
BstMAI	GTCTC	2 cut(s)	97, 146
BstSFI	CTRYAG	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	240
Csp6I	GTAC	2 cut(s)	27, 201
CviAII	CATG	1 cut(s)	389
CviJI	RGCY	3 cut(s)	124, 181, 248
CviKI_1	RGCY	3 cut(s)	124, 181, 248
CviQI	GTAC	2 cut(s)	27, 201
DdeI	CTNAG	1 cut(s)	149
Eco130I	CCWWGG	1 cut(s)	243
Eco32I	GATATC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	240
EcoRI	GAATTC	1 cut(s)	341
EcoRV	GATATC	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	1 cut(s)	392
FaiI	YATR	3 cut(s)	357, 390, 424
FalI	AAGNNNNNCTT	4 cut(s)	113, 145, 165, 197
FatI	CATG	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	44
FokI	GGATG	1 cut(s)	340
HapII	CCGG	2 cut(s)	71, 238
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	392
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HinfI	GANTC	4 cut(s)	58, 109, 163, 232
HpaII	CCGG	2 cut(s)	71, 238
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	2 cut(s)	114, 162
Hpy188III	TCNNGA	1 cut(s)	407
Hpy8I	GTNNAC	1 cut(s)	45
Hpy99I	CGWCG	4 cut(s)	43, 46, 79, 109
HpyAV	CCTTC	3 cut(s)	15, 48, 93
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	2 cut(s)	20, 212
HpyF3I	CTNAG	1 cut(s)	149
HpySE526I	ACGT	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	392
LpnPI	CCDG	2 cut(s)	84, 251
LweI	GCATC	2 cut(s)	69, 215
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	1 cut(s)	214
MboII	GAAGA	1 cut(s)	350
MluCI	AATT	2 cut(s)	341, 374
MlyI	GAGTC	2 cut(s)	52, 118
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	2 cut(s)	256, 409
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	3 cut(s)	132, 258, 267
MspI	CCGG	2 cut(s)	71, 238
Mva1269I	GAATGC	1 cut(s)	229
NlaIII	CATG	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PctI	GAATGC	1 cut(s)	229
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	163, 232
PleI	GAGTC	2 cut(s)	52, 117
PpsI	GAGTC	2 cut(s)	52, 117
PspPI	GGNCC	1 cut(s)	240
PstI	CTGCAG	1 cut(s)	214
RsaI	GTAC	2 cut(s)	28, 202
RsaNI	GTAC	2 cut(s)	27, 201
SalI	GTCGAC	1 cut(s)	43
SaqAI	TTAA	3 cut(s)	132, 258, 267
Sau96I	GGNCC	1 cut(s)	240
SchI	GAGTC	2 cut(s)	52, 118
SetI	ASST	3 cut(s)	44, 126, 267
SfaNI	GCATC	2 cut(s)	69, 215
SfcI	CTRYAG	1 cut(s)	210
SinI	GGWCC	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse9I	AATT	2 cut(s)	341, 374
SspI	AATATT	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	243
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	4 cut(s)	44, 107, 250, 369
TasI	AATT	2 cut(s)	341, 374
TfiI	GAWTC	2 cut(s)	163, 232
Tru1I	TTAA	3 cut(s)	132, 258, 267
Tru9I	TTAA	3 cut(s)	132, 258, 267
TspDTI	ATGAA	2 cut(s)	344, 355
VpaK11BI	GGWCC	1 cut(s)	240
XapI	RAATTY	2 cut(s)	341, 374
XmiI	GTMKAC	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	125
ZraI	GACGTC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.