Rh3AG280300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000372
Physical Location & Seq
Reverse (-)
32650783 .. 32653163
2381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG280300.1

Sequence Viewer

Length: 333 bp
ATGCACTGCACCTCCAAAATTGAAAATCAACAATTACAGTTCAAATTTTACTTCAACAATAAAACCTGGGCTTACCTTGATGGTGAGGTCGAGAGGGAGAGCCCAGGAGATGGAGTTGTGCTTGGAGGCTCGTCGTCTCGCCGAGATCTTACCGGCCTCGAGGAGCACCGATCTCAACTGCAGGGCGCGATCAATGAGCTTGATCTGATCAGTGTCGGAGTCACGGTAGTCGAGGATCCACTCGAAGGAGAGATCGATGGTGAAGGGCGGCGAGTCGGAGAAGTCGAGGAAGGTCTCAAGGAGTCGCAGTCAAAGAGGTTGGGATGTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.22

Weight (kDa)

4.74

Isoelectric Point (pI)

71.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 158
AccB7I CCANNNNNTGG 1 cut(s) 110
AccII CGCG 1 cut(s) 188
AciI CCGC 1 cut(s) 268
AclWI GGATC 2 cut(s) 230, 243
AcsI RAATTY 1 cut(s) 44
AfiI CCNNNNNNNGG 2 cut(s) 110, 245
AgsI TTSAA 3 cut(s) 23, 43, 55
AjnI CCWGG 2 cut(s) 65, 103
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 2 cut(s) 141, 299
AlwI GGATC 2 cut(s) 230, 243
Ama87I CYCGRG 1 cut(s) 158
AoxI GGCC 1 cut(s) 154
ApoI RAATTY 1 cut(s) 44
AspLEI GCGC 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 95, 272
AvaI CYCGRG 1 cut(s) 158
BamHI GGATCC 1 cut(s) 235
BanII GRGCYC 1 cut(s) 104
Bbv12I GWGCWC 1 cut(s) 168
BccI CCATC 3 cut(s) 74, 104, 251
BciT130I CCWGG 2 cut(s) 67, 105
BclI TGATCA 1 cut(s) 207
BcoDI GTCTC 2 cut(s) 141, 299
BfmI CTRYAG 1 cut(s) 179
BglII AGATCT 1 cut(s) 145
BisI GCNGC 1 cut(s) 269
BlsI GCNGC 1 cut(s) 270
Bme1390I CCNGG 2 cut(s) 67, 105
BmeT110I CYCGRG 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 2 cut(s) 67, 105
BpuEI CTTGAG 1 cut(s) 281
Bsa29I ATCGAT 1 cut(s) 255
BsaI GGTCTC 1 cut(s) 299
BsaJI CCNNGG 2 cut(s) 66, 103
BsaXI ACNNNNNCTCC 7 cut(s) 26, 99, 129, 210, 240, 293, 323
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 245
Bse118I RCCGGY 1 cut(s) 152
BseBI CCWGG 2 cut(s) 67, 105
BseCI ATCGAT 1 cut(s) 255
BseDI CCNNGG 2 cut(s) 66, 103
BseGI GGATG 1 cut(s) 329
BseLI CCNNNNNNNGG 2 cut(s) 110, 245
BseRI GAGGAG 1 cut(s) 176
Bsh1236I CGCG 1 cut(s) 188
BshFI GGCC 1 cut(s) 156
BshVI ATCGAT 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 158
BsiSI CCGG 1 cut(s) 153
BslI CCNNNNNNNGG 2 cut(s) 110, 245
BsmAI GTCTC 2 cut(s) 141, 299
BsmBI CGTCTC 1 cut(s) 141
BsnI GGCC 1 cut(s) 156
Bso31I GGTCTC 1 cut(s) 299
BsoBI CYCGRG 1 cut(s) 158
Bsp1286I GDGCHC 2 cut(s) 104, 168
Bsp143I GATC 7 cut(s) 145, 170, 189, 202, 207, 235, 252
BspACI CCGC 1 cut(s) 268
BspANI GGCC 1 cut(s) 156
BspDI ATCGAT 1 cut(s) 255
BspFNI CGCG 1 cut(s) 188
BspLI GGNNCC 1 cut(s) 237
BspMAI CTGCAG 1 cut(s) 183
BspPI GGATC 2 cut(s) 230, 243
BspTNI GGTCTC 1 cut(s) 299
BsrFI RCCGGY 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 2 cut(s) 66, 103
BssMI GATC 7 cut(s) 145, 170, 189, 202, 207, 235, 252
Bst2UI CCWGG 2 cut(s) 67, 105
Bst4CI ACNGT 2 cut(s) 39, 226
BstF5I GGATG 1 cut(s) 329
BstFNI CGCG 1 cut(s) 188
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 7 cut(s) 148, 173, 192, 205, 210, 238, 255
BstMAI GTCTC 2 cut(s) 141, 299
BstMBI GATC 7 cut(s) 145, 170, 189, 202, 207, 235, 252
BstNI CCWGG 2 cut(s) 67, 105
BstSCI CCNGG 2 cut(s) 65, 103
BstSFI CTRYAG 1 cut(s) 179
BstUI CGCG 1 cut(s) 188
BstX2I RGATCY 2 cut(s) 145, 235
BstYI RGATCY 2 cut(s) 145, 235
Bsu15I ATCGAT 1 cut(s) 255
BsuRI GGCC 1 cut(s) 156
BsuTUI ATCGAT 1 cut(s) 255
BtsCI GGATG 1 cut(s) 329
BtsI GCAGTG 1 cut(s) 4
BtsIMutI CAGTG 2 cut(s) 4, 217
CfoI GCGC 1 cut(s) 188
Cfr10I RCCGGY 1 cut(s) 152
ClaI ATCGAT 1 cut(s) 255
CviJI RGCY 5 cut(s) 71, 102, 129, 156, 199
CviKI_1 RGCY 5 cut(s) 71, 102, 129, 156, 199
DpnI GATC 7 cut(s) 147, 172, 191, 204, 209, 237, 254
DpnII GATC 7 cut(s) 145, 170, 189, 202, 207, 235, 252
Eco24I GRGCYC 1 cut(s) 104
Eco31I GGTCTC 1 cut(s) 299
Eco88I CYCGRG 1 cut(s) 158
EcoRII CCWGG 2 cut(s) 65, 103
EcoT38I GRGCYC 1 cut(s) 104
Esp3I CGTCTC 1 cut(s) 141
FbaI TGATCA 1 cut(s) 207
Fnu4HI GCNGC 1 cut(s) 269
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 1 cut(s) 269
GlaI GCGC 1 cut(s) 187
GluI GCNGC 1 cut(s) 269
HaeIII GGCC 1 cut(s) 156
HapII CCGG 1 cut(s) 153
HhaI GCGC 1 cut(s) 188
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HinfI GANTC 3 cut(s) 219, 273, 302
HpaII CCGG 1 cut(s) 153
HphI GGTGA 2 cut(s) 95, 272
Hpy188I TCNGA 3 cut(s) 207, 218, 278
Hpy188III TCNNGA 1 cut(s) 91
Hpy99I CGWCG 1 cut(s) 136
HpyAV CCTTC 3 cut(s) 239, 257, 284
HpyCH4III ACNGT 2 cut(s) 39, 226
HpyCH4V TGCA 3 cut(s) 4, 9, 181
HspAI GCGC 1 cut(s) 186
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 7 cut(s) 145, 170, 189, 202, 207, 235, 252
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 6 cut(s) 52, 79, 90, 117, 166, 167
MaeIII GTNAC 1 cut(s) 220
MalI GATC 7 cut(s) 147, 172, 191, 204, 209, 237, 254
MboI GATC 7 cut(s) 145, 170, 189, 202, 207, 235, 252
MflI RGATCY 2 cut(s) 145, 235
MhlI GDGCHC 2 cut(s) 104, 168
MluCI AATT 3 cut(s) 18, 32, 44
MlyI GAGTC 3 cut(s) 228, 282, 311
MmeI TCCRAC 2 cut(s) 196, 256
MnlI CCTC 9 cut(s) 22, 79, 87, 119, 154, 167, 226, 280, 309
MseI TTAA 1 cut(s) 331
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 2 cut(s) 67, 105
MvaI CCWGG 2 cut(s) 67, 105
MvnI CGCG 1 cut(s) 188
NdeII GATC 7 cut(s) 145, 170, 189, 202, 207, 235, 252
NlaIV GGNNCC 1 cut(s) 237
NmeAIII GCCGAG 1 cut(s) 167
NmuCI GTSAC 1 cut(s) 220
PaeR7I CTCGAG 1 cut(s) 158
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PflMI CCANNNNNTGG 1 cut(s) 110
PkrI GCNGC 1 cut(s) 270
PleI GAGTC 3 cut(s) 227, 281, 310
PpsI GAGTC 3 cut(s) 227, 281, 310
Psp6I CCWGG 2 cut(s) 65, 103
PspGI CCWGG 2 cut(s) 65, 103
PspN4I GGNNCC 1 cut(s) 237
PspXI VCTCGAGB 1 cut(s) 158
PstI CTGCAG 1 cut(s) 183
PsuI RGATCY 2 cut(s) 145, 235
SaqAI TTAA 1 cut(s) 331
SatI GCNGC 1 cut(s) 269
Sau3AI GATC 7 cut(s) 145, 170, 189, 202, 207, 235, 252
SchI GAGTC 3 cut(s) 228, 282, 311
ScrFI CCNGG 2 cut(s) 67, 105
SduI GDGCHC 2 cut(s) 104, 168
SetI ASST 7 cut(s) 14, 68, 78, 90, 201, 295, 320
SfcI CTRYAG 1 cut(s) 179
Sfr274I CTCGAG 1 cut(s) 158
SlaI CTCGAG 1 cut(s) 158
SmlI CTYRAG 2 cut(s) 158, 296
SmoI CTYRAG 2 cut(s) 158, 296
Sse9I AATT 3 cut(s) 18, 32, 44
SsiI CCGC 1 cut(s) 268
StyD4I CCNGG 2 cut(s) 65, 103
TaaI ACNGT 2 cut(s) 39, 226
TaqI TCGA 6 cut(s) 90, 159, 231, 243, 255, 285
TasI AATT 3 cut(s) 18, 32, 44
TauI GCSGC 1 cut(s) 271
Tru1I TTAA 1 cut(s) 331
Tru9I TTAA 1 cut(s) 331
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 220
TspRI CASTG 1 cut(s) 217
Van91I CCANNNNNTGG 1 cut(s) 110
XapI RAATTY 1 cut(s) 44
XhoI CTCGAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.