Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000372

Physical Location & Seq

Genomic Coordinates Forward (+)

22390001 .. 22411241

Gene Structure 21241 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G017860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCCCAAGAAGCCCACCGGAACAATAACCGAGCGGCAAAATTGTCACCAGAGGACGTTGCAACCAACGCCACCACCGTCAGAGTCTGCGGCCGACCGCATCCCAACAACCGACGCCCTACACAGTTGCGAAGAGCCACCAAGCACAACGCCAGTTGCTATGAGTGTCGATGATATTGTCACTTCTGGAGCCAAGCCATTATTTTTCCTTGATTACTTTGCTACAAGCCGCCTTGATGTTGATCTTGCTGAAAAGGAGTTCTGTAGATTCATGAAAGAACATGGATGGTTGGATGGAAAGCATGATGAGGGCAATCGGCCCAGTTCACCATCAGAGCAGCCCGACAATCGTCAAAAGTATGAATTAGCTCATGTATCACTACTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

129

Amino Acids

14.38

Weight (kDa)

5.28

Isoelectric Point (pI)

50.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000372)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g09000
rosa_chinensis	RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata	RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora	Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa	Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha	Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana	Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	34
AciI	CCGC	4 cut(s)	34, 89, 97, 229
AcoI	YGGCCR	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	114
AluBI	AGCT	1 cut(s)	368
AluI	AGCT	1 cut(s)	368
AlwNI	CAGNNNCTG	1 cut(s)	86
AoxI	GGCC	2 cut(s)	90, 317
ApeKI	GCWGC	1 cut(s)	337
AspS9I	GGNCC	1 cut(s)	318
AsuHPI	GGTGA	2 cut(s)	38, 318
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	3 cut(s)	279, 287, 337
BfmI	CTRYAG	1 cut(s)	262
BisI	GCNGC	4 cut(s)	35, 90, 229, 338
BlsI	GCNGC	4 cut(s)	36, 91, 230, 339
BmgT120I	GGNCC	1 cut(s)	318
BmiI	GGNNCC	1 cut(s)	190
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	1 cut(s)	108
BmuI	ACTGGG	1 cut(s)	315
BoxI	GACNNNNGTC	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	207
BsaBI	GATNNNNATC	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	17
Bse1I	ACTGG	2 cut(s)	152, 321
Bse8I	GATNNNNATC	1 cut(s)	240
BseGI	GGATG	3 cut(s)	99, 290, 298
BseJI	GATNNNNATC	1 cut(s)	240
BseNI	ACTGG	2 cut(s)	152, 321
BseX3I	CGGCCG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	349
Bsh1285I	CGRYCG	2 cut(s)	93, 97
BshFI	GGCC	2 cut(s)	92, 319
BsiEI	CGRYCG	2 cut(s)	93, 97
BsiSI	CCGG	1 cut(s)	18
BsnI	GGCC	2 cut(s)	92, 319
Bsp143I	GATC	1 cut(s)	241
BspACI	CCGC	4 cut(s)	34, 89, 97, 229
BspANI	GGCC	2 cut(s)	92, 319
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	190
BspQI	GCTCTTC	1 cut(s)	126
BsrBI	CCGCTC	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	152, 321
BssMI	GATC	1 cut(s)	241
BssNI	GRCGYC	1 cut(s)	114
Bst4CI	ACNGT	2 cut(s)	78, 125
Bst6I	CTCTTC	1 cut(s)	126
BstACI	GRCGYC	1 cut(s)	114
BstF5I	GGATG	3 cut(s)	99, 290, 298
BstKTI	GATC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	241
BstMCI	CGRYCG	2 cut(s)	93, 97
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 67
BstPAI	GACNNNNGTC	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	262
BstV1I	GCAGC	1 cut(s)	349
BstZI	CGGCCG	1 cut(s)	90
BsuRI	GGCC	2 cut(s)	92, 319
BtsCI	GGATG	3 cut(s)	99, 290, 298
CaiI	CAGNNNCTG	1 cut(s)	86
CciI	TCATGA	1 cut(s)	270
Cfr13I	GGNCC	1 cut(s)	318
CseI	GACGC	1 cut(s)	122
CviAII	CATG	4 cut(s)	271, 281, 302, 371
CviJI	RGCY	9 cut(s)	13, 92, 136, 191, 196, 228, 319, 340, 368
CviKI_1	RGCY	9 cut(s)	13, 92, 136, 191, 196, 228, 319, 340, 368
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
EaeI	YGGCCR	1 cut(s)	90
EagI	CGGCCG	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
EclXI	CGGCCG	1 cut(s)	90
Eco52I	CGGCCG	1 cut(s)	90
FaeI	CATG	4 cut(s)	274, 284, 305, 374
FaiI	YATR	6 cut(s)	161, 272, 282, 303, 360, 372
FatI	CATG	4 cut(s)	270, 280, 301, 370
Fnu4HI	GCNGC	4 cut(s)	35, 90, 229, 338
FokI	GGATG	3 cut(s)	86, 297, 305
Fsp4HI	GCNGC	4 cut(s)	35, 90, 229, 338
GluI	GCNGC	4 cut(s)	35, 90, 229, 338
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	92, 319
HapII	CCGG	1 cut(s)	18
HgaI	GACGC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	4 cut(s)	274, 284, 305, 374
HinfI	GANTC	2 cut(s)	83, 267
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	2 cut(s)	38, 318
Hpy166II	GTNNAC	1 cut(s)	326
Hpy188I	TCNGA	2 cut(s)	82, 334
Hpy188III	TCNNGA	2 cut(s)	186, 271
Hpy8I	GTNNAC	1 cut(s)	326
Hpy99I	CGWCG	1 cut(s)	116
HpyCH4III	ACNGT	2 cut(s)	78, 125
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	1 cut(s)	61
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 67
HpySE526I	ACGT	1 cut(s)	56
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	4 cut(s)	274, 284, 305, 374
Kzo9I	GATC	1 cut(s)	241
LguI	GCTCTTC	1 cut(s)	126
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	5 cut(s)	31, 62, 165, 171, 334
Lsp1109I	GCAGC	1 cut(s)	349
LweI	GCATC	1 cut(s)	108
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	2 cut(s)	44, 178
MalI	GATC	1 cut(s)	243
MbiI	CCGCTC	1 cut(s)	34
MboI	GATC	1 cut(s)	241
MboII	GAAGA	1 cut(s)	143
MluCI	AATT	2 cut(s)	40, 362
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	2 cut(s)	45, 301
MspI	CCGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	2 cut(s)	10, 67
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	4 cut(s)	274, 284, 305, 374
NlaIV	GGNNCC	1 cut(s)	190
NmuCI	GTSAC	2 cut(s)	44, 178
PagI	TCATGA	1 cut(s)	270
PciSI	GCTCTTC	1 cut(s)	126
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	267
PkrI	GCNGC	4 cut(s)	36, 91, 230, 339
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PshAI	GACNNNNGTC	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	318
PstNI	CAGNNNCTG	1 cut(s)	86
SapI	GCTCTTC	1 cut(s)	126
SatI	GCNGC	4 cut(s)	35, 90, 229, 338
Sau3AI	GATC	1 cut(s)	241
Sau96I	GGNCC	1 cut(s)	318
SchI	GAGTC	1 cut(s)	92
SetI	ASST	2 cut(s)	59, 370
SfaNI	GCATC	1 cut(s)	108
SfcI	CTRYAG	1 cut(s)	262
Sse9I	AATT	2 cut(s)	40, 362
SsiI	CCGC	4 cut(s)	34, 89, 97, 229
TaaI	ACNGT	2 cut(s)	78, 125
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	1 cut(s)	168
TasI	AATT	2 cut(s)	40, 362
TauI	GCSGC	3 cut(s)	37, 92, 231
TfiI	GAWTC	1 cut(s)	267
TseFI	GTSAC	2 cut(s)	44, 178
TseI	GCWGC	1 cut(s)	337
Tsp45I	GTSAC	2 cut(s)	44, 178
TspDTI	ATGAA	3 cut(s)	259, 287, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.