Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000372

Physical Location & Seq

Genomic Coordinates Reverse (-)

25157416 .. 25158129

Gene Structure 714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG213100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAGTCGTCCACAGGTCCCGCATCGACCTTTCTTCCATTTTGGAAATCCTTTCCAGATGATTTCGCCCAAGGGTTCTCAAATGACTCCGAACCTTTCTGCACTGCTGAACACTTTTGAGGAAACATTGGCTGGGAGGTTGAGAAAGCTCAACCCAAAAGATAACAATGATGTCCTTAGCTTGTCATGGATGAAATTGGCAATGGAGTCGCTTTGTGGAACCAAGGAGCTTTTGGATGAAATGAAGAGCTTTGGTATCAAACCAGATATAGTTGTCTACACTACTTTAATTGATTGCTACTGTAGGACTGGGAGAGTTGACGAAGCGATAGAGTTGCTCAAAGAGATGAAAGAAAGACGGTGCAAAGCTGATACTGTGACTTTCAATGTGATACTTGGAGGATTATGTAGAGAAGGCAGAATTGAGGATGCGCTTGAGATGCTGGACAAACTTCCTTATGAGGGTATCTATCTGAATAAGGGAAGCTACAAGATTATGTTGAATTCCTTGTGTCAGAAAGGCGAACTAAACAAAGCTAAAGAGTTGTTGAGATTGATGATGGGTAGGGGGTTTGTACCACATTATGCAACTTCAAACGAGTTGCTAGTTAGCCTTTGTGAGGCTGGAATGGCAGATGATGCAACTATGGTTTTATTTGGATTGGTGGAGTTGGGTTTCAAACCACTGCCTGATTCCTGGGCTCTTTTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BPS1

Protein Analysis

237

Amino Acids

26.75

Weight (kDa)

6.34

Isoelectric Point (pI)

28.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	69 - 182	1e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	77 - 133	2.7e-14	Pentatricopeptide repeat domain
TPR_24	PF23276	78 - 154	1e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	85 - 117	1.3e-15	PPR repeat
PPR_2	PF13041	88 - 137	7.3e-20	PPR repeat family
PPR	PF01535	91 - 121	1e-11	PPR repeat
PPR_1	PF12854	120 - 150	3.2e-10	PPR repeat
PPR_2	PF13041	124 - 172	4.2e-12	PPR repeat family
PPR	PF01535	126 - 156	5.3e-06	PPR repeat
PPR_1	PF12854	155 - 186	2.7e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000372)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g09000
rosa_chinensis	RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata	RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora	Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa	Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha	Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana	Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	276
AciI	CCGC	1 cut(s)	20
AcsI	RAATTY	1 cut(s)	502
AfaI	GTAC	1 cut(s)	576
AfiI	CCNNNNNNNGG	2 cut(s)	461, 619
AgsI	TTSAA	4 cut(s)	385, 502, 594, 679
AjnI	CCWGG	1 cut(s)	695
AluBI	AGCT	7 cut(s)	148, 180, 229, 249, 368, 486, 536
AluI	AGCT	7 cut(s)	148, 180, 229, 249, 368, 486, 536
ApoI	RAATTY	1 cut(s)	502
AspLEI	GCGC	1 cut(s)	433
AspS9I	GGNCC	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	703
BccI	CCATC	1 cut(s)	553
BcgI	CGANNNNNNTGC	4 cut(s)	189, 223, 316, 350
BciT130I	CCWGG	1 cut(s)	697
BfaI	CTAG	1 cut(s)	605
BfmI	CTRYAG	1 cut(s)	301
Bme1390I	CCNGG	1 cut(s)	697
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	2 cut(s)	18, 220
BmrFI	CCNGG	1 cut(s)	697
BmrI	ACTGGG	1 cut(s)	318
BmsI	GCATC	4 cut(s)	31, 418, 429, 628
BmuI	ACTGGG	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	455
BsaJI	CCNNGG	3 cut(s)	69, 222, 696
Bsc4I	CCNNNNNNNGG	2 cut(s)	461, 619
Bse1I	ACTGG	1 cut(s)	313
Bse3DI	GCAATG	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	697
BseDI	CCNNGG	3 cut(s)	69, 222, 696
BseGI	GGATG	3 cut(s)	195, 241, 433
BseLI	CCNNNNNNNGG	2 cut(s)	461, 619
BseMI	GCAATG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	313
BseYI	CCCAGC	1 cut(s)	131
BsgI	GTGCAG	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	2
BslI	CCNNNNNNNGG	2 cut(s)	461, 619
BsmFI	GGGAC	1 cut(s)	2
Bsp1286I	GDGCHC	1 cut(s)	703
BspACI	CCGC	1 cut(s)	20
BspLI	GGNNCC	2 cut(s)	18, 220
BspQI	GCTCTTC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	3 cut(s)	69, 222, 696
BssT1I	CCWWGG	2 cut(s)	69, 222
Bst2UI	CCWGG	1 cut(s)	697
Bst4CI	ACNGT	3 cut(s)	302, 360, 376
Bst6I	CTCTTC	1 cut(s)	239
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstDEI	CTNAG	1 cut(s)	176
BstENI	CCTNNNNNAGG	1 cut(s)	617
BstF5I	GGATG	3 cut(s)	195, 241, 433
BstHHI	GCGC	1 cut(s)	433
BstMWI	GCNNNNNNNGC	3 cut(s)	439, 629, 638
BstNI	CCWGG	1 cut(s)	697
BstSCI	CCNGG	1 cut(s)	695
BstSFI	CTRYAG	1 cut(s)	301
BtsCI	GGATG	3 cut(s)	195, 241, 433
BtsI	GCAGTG	2 cut(s)	101, 683
BtsIMutI	CAGTG	2 cut(s)	101, 683
CfoI	GCGC	1 cut(s)	433
Cfr13I	GGNCC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	575
CviAII	CATG	1 cut(s)	186
CviQI	GTAC	1 cut(s)	575
DdeI	CTNAG	1 cut(s)	176
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco130I	CCWWGG	2 cut(s)	69, 222
Eco24I	GRGCYC	1 cut(s)	703
Eco47I	GGWCC	1 cut(s)	16
EcoNI	CCTNNNNNAGG	1 cut(s)	617
EcoO109I	RGGNCCY	1 cut(s)	16
EcoRI	GAATTC	1 cut(s)	502
EcoRII	CCWGG	1 cut(s)	695
EcoT14I	CCWWGG	2 cut(s)	69, 222
EcoT38I	GRGCYC	1 cut(s)	703
ErhI	CCWWGG	2 cut(s)	69, 222
FaeI	CATG	1 cut(s)	189
FaiI	YATR	7 cut(s)	187, 269, 406, 459, 497, 585, 647
FaqI	GGGAC	1 cut(s)	2
FatI	CATG	1 cut(s)	185
FauI	CCCGC	1 cut(s)	27
FblI	GTMKAC	1 cut(s)	276
FokI	GGATG	3 cut(s)	202, 248, 440
FriOI	GRGCYC	1 cut(s)	703
FspBI	CTAG	1 cut(s)	605
GlaI	GCGC	1 cut(s)	432
GsaI	CCCAGC	1 cut(s)	135
HhaI	GCGC	1 cut(s)	433
Hin1II	CATG	1 cut(s)	189
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	4 cut(s)	4, 85, 206, 692
Hpy166II	GTNNAC	3 cut(s)	11, 277, 319
Hpy188I	TCNGA	3 cut(s)	90, 474, 516
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	3 cut(s)	11, 277, 319
HpyAV	CCTTC	1 cut(s)	407
HpyCH4III	ACNGT	3 cut(s)	302, 360, 376
HpyCH4V	TGCA	4 cut(s)	101, 363, 587, 641
HpyF10VI	GCNNNNNNNGC	3 cut(s)	439, 629, 638
HpyF3I	CTNAG	1 cut(s)	176
Hsp92II	CATG	1 cut(s)	189
HspAI	GCGC	1 cut(s)	431
LguI	GCTCTTC	1 cut(s)	239
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	9 cut(s)	68, 117, 276, 294, 428, 609, 682, 702, 709
LweI	GCATC	4 cut(s)	31, 418, 429, 628
MaeI	CTAG	1 cut(s)	605
MaeIII	GTNAC	1 cut(s)	376
MboII	GAAGA	2 cut(s)	25, 256
MhlI	GDGCHC	1 cut(s)	703
MluCI	AATT	4 cut(s)	194, 288, 420, 502
MlyI	GAGTC	3 cut(s)	13, 79, 215
MnlI	CCTC	6 cut(s)	112, 129, 392, 418, 454, 613
MseI	TTAA	2 cut(s)	287, 712
MspR9I	CCNGG	1 cut(s)	697
MvaI	CCWGG	1 cut(s)	697
MwoI	GCNNNNNNNGC	3 cut(s)	439, 629, 638
NlaIII	CATG	1 cut(s)	189
NlaIV	GGNNCC	2 cut(s)	18, 220
NmuCI	GTSAC	1 cut(s)	376
PciSI	GCTCTTC	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	692
PleI	GAGTC	3 cut(s)	12, 79, 214
PpsI	GAGTC	3 cut(s)	12, 79, 214
PpuMI	RGGWCCY	1 cut(s)	16
Psp5II	RGGWCCY	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	695
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	695
PspN4I	GGNNCC	2 cut(s)	18, 220
PspPI	GGNCC	1 cut(s)	16
PspPPI	RGGWCCY	1 cut(s)	16
RsaI	GTAC	1 cut(s)	576
RsaNI	GTAC	1 cut(s)	575
SapI	GCTCTTC	1 cut(s)	239
SaqAI	TTAA	2 cut(s)	287, 712
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	3 cut(s)	13, 79, 215
ScrFI	CCNGG	1 cut(s)	697
SduI	GDGCHC	1 cut(s)	703
SfaNI	GCATC	4 cut(s)	31, 418, 429, 628
SfcI	CTRYAG	1 cut(s)	301
SinI	GGWCC	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	4 cut(s)	194, 288, 420, 502
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	605
StyD4I	CCNGG	1 cut(s)	695
StyI	CCWWGG	2 cut(s)	69, 222
TaaI	ACNGT	3 cut(s)	302, 360, 376
TaqI	TCGA	1 cut(s)	25
TasI	AATT	4 cut(s)	194, 288, 420, 502
TfiI	GAWTC	1 cut(s)	692
Tru1I	TTAA	2 cut(s)	287, 712
Tru9I	TTAA	2 cut(s)	287, 712
TscAI	CASTG	2 cut(s)	108, 690
TseFI	GTSAC	1 cut(s)	376
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	4 cut(s)	206, 252, 257, 362
TspRI	CASTG	2 cut(s)	108, 690
VpaK11BI	GGWCC	1 cut(s)	16
XagI	CCTNNNNNAGG	1 cut(s)	617
XapI	RAATTY	1 cut(s)	502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	276
XspI	CTAG	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.