Rh2DG267900

Protein BPS1, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
29116584 .. 29139709
23126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG267900.1

Sequence Viewer

Length: 1104 bp
ATGAAGGTTTTGGCCTGGAACTGCCGTGGGATTAATAATCCGGCCGCCGTTCAATCGTTGAAACGTCTTATTCGACAGCATCAACCATCGATTATCTTTCTCTCCGAAACGAAGGTGGATGATTGGGATTATATGAACTCTTTAAGGCTACAGCTTGGCTTTTTGAACTGTGAAGCGGTGTTCATTGCGGGACAGTCCGGTGGGGTAGCGTTGCTATGGGCTAACGGTCTAGATATCCGTTTCCTTTCAAAGTCGTCGTCTCATGTTGACGTGGAGGTTAGGGTTTCTGACGGATCTGGGATTGCATGGTGTCTGACAGGTTTCCACGGGGCTTCTTTTACATGGCGTGGTCCTGGAATGAGAAGCAGACTTGATAGGGCGGTGGCTACGTCCACCTGGTTTGATATCTTCCCTGCAGCATTGGGGATGCGGTGCCAGCTGTTCAAAGAGAAACGAGTGTTCATAATTCTCCTTGACACTTGCTGGCAGAGGAGTGTGTTTGGTGTCAGAAGATGTGAGATTGATCAGCTCCGGGCACGTTTGCAAGTTCTCTCTGAATCTCCCTTGTCTGTGGAGAATCAAGGTGAAAGTAAAGACTCTAACGTCTCCGGTGCCGATGCCTTCGCTCGCCTCTACTCCGCCATCGAGTCCGACATTGAAGCTGCTCTTCAGAAAGCGGAGCTTGCTTCAAAAGAAAAAAGTATGGCATCTGCAGGTGCTCTGACTGCCAAGATTCGCCGGACCAAGGCTCCATTGCTTGAAGAGGTTCCCAAGTTGCAGAGATTGGCTGTAAAGAAGATGATTTCGCCGAAGGGTTCTCAAATGACTCCGAACCTTTCTGCACTGCTGAACACTTTTGAGGAAACATTGGCTGGGAGGTTGAGAAAGCTCAATCCAAAAGATAACAATGATGTCCTTAGCTTGTCATGGATGAAATTGGCAATGGAGTCGCTTTGTGGAACTCGTAATGACATAAAAACTCTCATAGCTGAGATTGATCTTCACGTGAGTGCTTGGGATGAGAAGTGGATTGATGTGTACTTGGACATCAGTGTAAAGTTGCTCGATATATGCATTGTCTTCAGCTCTGAGTCGCACGCTTAA

Protein Analysis

367

Amino Acids

40.88

Weight (kDa)

8.72

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 5 - 78 9.2e-07 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 704
AasI GACNNNNNNGTC 1 cut(s) 602
Acc36I ACCTGC 1 cut(s) 704
AccB1I GGYRCC 2 cut(s) 432, 611
AciI CCGC 7 cut(s) 45, 176, 188, 380, 430, 639, 677
AclWI GGATC 1 cut(s) 301
AcoI YGGCCR 1 cut(s) 42
AcuI CTGAAG 2 cut(s) 653, 1066
AcvI CACGTG 1 cut(s) 1006
AfaI GTAC 1 cut(s) 1040
AfiI CCNNNNNNNGG 1 cut(s) 745
AgsI TTSAA 8 cut(s) 53, 61, 166, 249, 445, 659, 690, 761
AjiI CACGTC 1 cut(s) 271
AjnI CCWGG 3 cut(s) 14, 352, 395
AleI CACNNNNGTG 1 cut(s) 1008
AluBI AGCT 9 cut(s) 154, 439, 529, 662, 682, 889, 921, 989, 1086
AluI AGCT 9 cut(s) 154, 439, 529, 662, 682, 889, 921, 989, 1086
Alw21I GWGCWC 1 cut(s) 721
Alw26I GTCTC 2 cut(s) 264, 610
AlwI GGATC 1 cut(s) 301
AoxI GGCC 2 cut(s) 12, 42
ApeKI GCWGC 2 cut(s) 416, 662
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AseI ATTAAT 1 cut(s) 33
Asp700I GAANNNNTTC 1 cut(s) 765
AspS9I GGNCC 2 cut(s) 350, 741
AsuC2I CCSGG 1 cut(s) 533
AsuHPI GGTGA 1 cut(s) 596
AvaII GGWCC 2 cut(s) 350, 741
BaeGI GKGCMC 1 cut(s) 538
BanI GGYRCC 2 cut(s) 432, 611
BbrPI CACGTG 1 cut(s) 1006
BbsI GAAGAC 1 cut(s) 1072
Bbv12I GWGCWC 1 cut(s) 721
BbvI GCAGC 2 cut(s) 428, 649
BccI CCATC 2 cut(s) 94, 650
BceAI ACGGC 2 cut(s) 9, 32
BcgI CGANNNNNNTGC 2 cut(s) 930, 964
BciT130I CCWGG 3 cut(s) 16, 354, 397
BclI TGATCA 1 cut(s) 523
BcnI CCSGG 1 cut(s) 533
BcoDI GTCTC 2 cut(s) 264, 610
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 3 cut(s) 149, 414, 711
BfuAI ACCTGC 1 cut(s) 704
BisI GCNGC 3 cut(s) 45, 417, 663
BlsI GCNGC 3 cut(s) 46, 418, 664
Bme1390I CCNGG 4 cut(s) 16, 354, 397, 533
Bme18I GGWCC 2 cut(s) 350, 741
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 2 cut(s) 350, 741
BmiI GGNNCC 4 cut(s) 434, 613, 750, 768
BmrFI CCNGG 4 cut(s) 16, 354, 397, 533
BmsI GCATC 4 cut(s) 88, 417, 607, 716
BpiI GAAGAC 1 cut(s) 1072
Bpu10I CCTNAGC 1 cut(s) 917
BpuMI CCSGG 1 cut(s) 533
Bsa29I ATCGAT 1 cut(s) 89
BsaAI YACGTR 1 cut(s) 1006
BsaJI CCNNGG 3 cut(s) 25, 325, 744
BsaWI WCCGGW 2 cut(s) 197, 608
BsaXI ACNNNNNCTCC 2 cut(s) 733, 763
Bsc4I CCNNNNNNNGG 1 cut(s) 745
Bse3DI GCAATG 3 cut(s) 183, 752, 948
BseBI CCWGG 3 cut(s) 16, 354, 397
BseCI ATCGAT 1 cut(s) 89
BseDI CCNNGG 3 cut(s) 25, 325, 744
BseGI GGATG 4 cut(s) 124, 432, 936, 1024
BseLI CCNNNNNNNGG 1 cut(s) 745
BseMI GCAATG 3 cut(s) 183, 752, 948
BseMII CTCAG 2 cut(s) 981, 1080
BseRI GAGGAG 1 cut(s) 505
BseSI GKGCMC 1 cut(s) 538
BseX3I CGGCCG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 428, 649
BseYI CCCAGC 1 cut(s) 872
BsgI GTGCAG 1 cut(s) 825
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 2 cut(s) 14, 44
BshNI GGYRCC 2 cut(s) 432, 611
BshVI ATCGAT 1 cut(s) 89
BsiEI CGRYCG 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 721
BsiSI CCGG 5 cut(s) 41, 198, 532, 609, 739
BslFI GGGAC 1 cut(s) 204
BslI CCNNNNNNNGG 1 cut(s) 745
BsmAI GTCTC 2 cut(s) 264, 610
BsmBI CGTCTC 2 cut(s) 264, 610
BsmFI GGGAC 1 cut(s) 204
BsnI GGCC 2 cut(s) 14, 44
Bsp1286I GDGCHC 2 cut(s) 538, 721
Bsp143I GATC 3 cut(s) 293, 523, 997
BspACI CCGC 7 cut(s) 45, 176, 188, 380, 430, 639, 677
BspANI GGCC 2 cut(s) 14, 44
BspCNI CTCAG 2 cut(s) 982, 1081
BspDI ATCGAT 1 cut(s) 89
BspLI GGNNCC 4 cut(s) 434, 613, 750, 768
BspMAI CTGCAG 2 cut(s) 418, 715
BspMI ACCTGC 1 cut(s) 704
BspPI GGATC 1 cut(s) 301
BspQI GCTCTTC 1 cut(s) 672
BspT107I GGYRCC 2 cut(s) 432, 611
BsrDI GCAATG 3 cut(s) 183, 752, 948
BssECI CCNNGG 3 cut(s) 25, 325, 744
BssMI GATC 3 cut(s) 293, 523, 997
BssT1I CCWWGG 1 cut(s) 744
Bst2UI CCWGG 3 cut(s) 16, 354, 397
Bst4CI ACNGT 3 cut(s) 170, 195, 227
Bst6I CTCTTC 2 cut(s) 672, 756
BstBAI YACGTR 1 cut(s) 1006
BstC8I GCNNGC 5 cut(s) 437, 485, 628, 684, 1098
BstDEI CTNAG 3 cut(s) 917, 990, 1089
BstDSI CCRYGG 2 cut(s) 25, 325
BstF5I GGATG 4 cut(s) 124, 432, 936, 1024
BstKTI GATC 3 cut(s) 296, 526, 1000
BstMAI GTCTC 2 cut(s) 264, 610
BstMBI GATC 3 cut(s) 293, 523, 997
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 3 cut(s) 436, 683, 725
BstNI CCWGG 3 cut(s) 16, 354, 397
BstSCI CCNGG 4 cut(s) 14, 352, 395, 531
BstSFI CTRYAG 3 cut(s) 149, 414, 711
BstSLI GKGCMC 1 cut(s) 538
BstV1I GCAGC 2 cut(s) 428, 649
BstV2I GAAGAC 1 cut(s) 1072
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
BstZI CGGCCG 1 cut(s) 42
Bsu15I ATCGAT 1 cut(s) 89
BsuRI GGCC 2 cut(s) 14, 44
BsuTUI ATCGAT 1 cut(s) 89
BtgI CCRYGG 2 cut(s) 25, 325
BtrI CACGTC 1 cut(s) 271
BtsCI GGATG 4 cut(s) 124, 432, 936, 1024
BtsI GCAGTG 1 cut(s) 842
BtsIMutI CAGTG 2 cut(s) 842, 1057
BveI ACCTGC 1 cut(s) 704
Cac8I GCNNGC 5 cut(s) 437, 485, 628, 684, 1098
Cfr13I GGNCC 2 cut(s) 350, 741
ClaI ATCGAT 1 cut(s) 89
CsiI ACCWGGT 1 cut(s) 395
Csp6I GTAC 1 cut(s) 1039
CspCI CAANNNNNGTGG 2 cut(s) 382, 417
CviAII CATG 4 cut(s) 263, 306, 342, 927
CviQI GTAC 1 cut(s) 1039
DdeI CTNAG 3 cut(s) 917, 990, 1089
DpnI GATC 3 cut(s) 295, 525, 999
DpnII GATC 3 cut(s) 293, 523, 997
DrdI GACNNNNNNGTC 1 cut(s) 602
DseDI GACNNNNNNGTC 1 cut(s) 602
EaeI YGGCCR 1 cut(s) 42
EagI CGGCCG 1 cut(s) 42
Eam1104I CTCTTC 2 cut(s) 672, 756
EarI CTCTTC 2 cut(s) 672, 756
EciI GGCGGA 1 cut(s) 628
EclXI CGGCCG 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 744
Eco32I GATATC 2 cut(s) 235, 406
Eco47I GGWCC 2 cut(s) 350, 741
Eco52I CGGCCG 1 cut(s) 42
Eco57I CTGAAG 2 cut(s) 653, 1066
Eco72I CACGTG 1 cut(s) 1006
EcoRII CCWGG 3 cut(s) 14, 352, 395
EcoRV GATATC 2 cut(s) 235, 406
EcoT14I CCWWGG 1 cut(s) 744
EcoT22I ATGCAT 1 cut(s) 1076
ErhI CCWWGG 1 cut(s) 744
Esp3I CGTCTC 2 cut(s) 264, 610
FaeI CATG 4 cut(s) 266, 309, 345, 930
FalI AAGNNNNNCTT 4 cut(s) 651, 683, 666, 698
FaqI GGGAC 1 cut(s) 204
FatI CATG 4 cut(s) 262, 305, 341, 926
FauI CCCGC 1 cut(s) 181
FbaI TGATCA 1 cut(s) 523
Fnu4HI GCNGC 3 cut(s) 45, 417, 663
FokI GGATG 4 cut(s) 131, 439, 943, 1031
Fsp4HI GCNGC 3 cut(s) 45, 417, 663
FspBI CTAG 1 cut(s) 230
GluI GCNGC 3 cut(s) 45, 417, 663
GsaI CCCAGC 1 cut(s) 876
HaeIII GGCC 2 cut(s) 14, 44
HapII CCGG 5 cut(s) 41, 198, 532, 609, 739
Hin1II CATG 4 cut(s) 266, 309, 345, 930
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 8 cut(s) 557, 577, 596, 647, 733, 826, 947, 1091
HpaII CCGG 5 cut(s) 41, 198, 532, 609, 739
HphI GGTGA 1 cut(s) 596
Hpy166II GTNNAC 3 cut(s) 268, 393, 1039
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 3 cut(s) 268, 393, 1039
Hpy99I CGWCG 1 cut(s) 259
HpyAV CCTTC 3 cut(s) 106, 631, 805
HpyCH4III ACNGT 3 cut(s) 170, 195, 227
HpyCH4IV ACGT 6 cut(s) 64, 270, 389, 538, 603, 1005
HpyCH4V TGCA 7 cut(s) 305, 416, 544, 713, 778, 842, 1074
HpyF10VI GCNNNNNNNGC 3 cut(s) 436, 683, 725
HpyF3I CTNAG 3 cut(s) 917, 990, 1089
HpySE526I ACGT 6 cut(s) 64, 270, 389, 538, 603, 1005
Hsp92II CATG 4 cut(s) 266, 309, 345, 930
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 3 cut(s) 293, 523, 997
LguI GCTCTTC 1 cut(s) 672
LmnI GCTCC 3 cut(s) 534, 679, 754
Lsp1109I GCAGC 2 cut(s) 428, 649
LweI GCATC 4 cut(s) 88, 417, 607, 716
MabI ACCWGGT 1 cut(s) 395
MaeI CTAG 1 cut(s) 230
MaeII ACGT 6 cut(s) 64, 270, 389, 538, 603, 1005
MalI GATC 3 cut(s) 295, 525, 999
MboI GATC 3 cut(s) 293, 523, 997
MboII GAAGA 7 cut(s) 400, 522, 659, 773, 808, 992, 1072
MflI RGATCY 1 cut(s) 293
MhlI GDGCHC 2 cut(s) 538, 721
MluCI AATT 2 cut(s) 465, 935
MlyI GAGTC 5 cut(s) 590, 656, 820, 956, 1100
MmeI TCCRAC 1 cut(s) 675
MnlI CCTC 6 cut(s) 268, 483, 641, 757, 853, 870
Mph1103I ATGCAT 1 cut(s) 1076
MroXI GAANNNNTTC 1 cut(s) 765
MseI TTAA 3 cut(s) 33, 143, 1102
MslI CAYNNNNRTG 1 cut(s) 1008
MspA1I CMGCKG 1 cut(s) 439
MspI CCGG 5 cut(s) 41, 198, 532, 609, 739
MspR9I CCNGG 4 cut(s) 16, 354, 397, 533
MvaI CCWGG 3 cut(s) 16, 354, 397
MwoI GCNNNNNNNGC 3 cut(s) 436, 683, 725
NciI CCSGG 1 cut(s) 533
NdeII GATC 3 cut(s) 293, 523, 997
NlaIII CATG 4 cut(s) 266, 309, 345, 930
NlaIV GGNNCC 4 cut(s) 434, 613, 750, 768
NsiI ATGCAT 1 cut(s) 1076
OliI CACNNNNGTG 1 cut(s) 1008
PaqCI CACCTGC 1 cut(s) 704
PciSI GCTCTTC 1 cut(s) 672
PcsI WCGNNNNNNNCGW 1 cut(s) 70
PdmI GAANNNNTTC 1 cut(s) 765
PfeI GAWTC 3 cut(s) 557, 577, 733
PfoI TCCNGGA 1 cut(s) 352
PkrI GCNGC 3 cut(s) 46, 418, 664
PleI GAGTC 5 cut(s) 590, 655, 820, 955, 1099
PmaCI CACGTG 1 cut(s) 1006
PmlI CACGTG 1 cut(s) 1006
PpsI GAGTC 5 cut(s) 590, 655, 820, 955, 1099
Ppu21I YACGTR 1 cut(s) 1006
PshBI ATTAAT 1 cut(s) 33
Psp6I CCWGG 3 cut(s) 14, 352, 395
PspCI CACGTG 1 cut(s) 1006
PspFI CCCAGC 1 cut(s) 872
PspGI CCWGG 3 cut(s) 14, 352, 395
PspN4I GGNNCC 4 cut(s) 434, 613, 750, 768
PspPI GGNCC 2 cut(s) 350, 741
PstI CTGCAG 2 cut(s) 418, 715
PsuI RGATCY 1 cut(s) 293
PvuII CAGCTG 1 cut(s) 439
RsaI GTAC 1 cut(s) 1040
RsaNI GTAC 1 cut(s) 1039
RseI CAYNNNNRTG 1 cut(s) 1008
SapI GCTCTTC 1 cut(s) 672
SaqAI TTAA 3 cut(s) 33, 143, 1102
SatI GCNGC 3 cut(s) 45, 417, 663
Sau3AI GATC 3 cut(s) 293, 523, 997
Sau96I GGNCC 2 cut(s) 350, 741
SchI GAGTC 5 cut(s) 590, 656, 820, 956, 1100
ScrFI CCNGG 4 cut(s) 16, 354, 397, 533
SduI GDGCHC 2 cut(s) 538, 721
SexAI ACCWGGT 1 cut(s) 395
SfaNI GCATC 4 cut(s) 88, 417, 607, 716
SfcI CTRYAG 3 cut(s) 149, 414, 711
SinI GGWCC 2 cut(s) 350, 741
SmiMI CAYNNNNRTG 1 cut(s) 1008
Sse9I AATT 2 cut(s) 465, 935
SsiI CCGC 7 cut(s) 45, 176, 188, 380, 430, 639, 677
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 4 cut(s) 14, 352, 395, 531
StyI CCWWGG 1 cut(s) 744
TaaI ACNGT 3 cut(s) 170, 195, 227
TaiI ACGT 6 cut(s) 67, 273, 392, 541, 606, 1008
TaqI TCGA 4 cut(s) 73, 89, 645, 1065
TasI AATT 2 cut(s) 465, 935
TatI WGTACW 1 cut(s) 1038
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 3 cut(s) 557, 577, 733
Tru1I TTAA 3 cut(s) 33, 143, 1102
Tru9I TTAA 3 cut(s) 33, 143, 1102
TscAI CASTG 2 cut(s) 849, 1057
TseI GCWGC 2 cut(s) 416, 662
TspDTI ATGAA 5 cut(s) 17, 149, 172, 451, 947
TspGWI ACGGA 2 cut(s) 227, 306
TspRI CASTG 2 cut(s) 849, 1057
VpaK11BI GGWCC 2 cut(s) 350, 741
VspI ATTAAT 1 cut(s) 33
XbaI TCTAGA 1 cut(s) 229
XmnI GAANNNNTTC 1 cut(s) 765
XspI CTAG 1 cut(s) 230
Zsp2I ATGCAT 1 cut(s) 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.