Protein BPS1, chloroplastic-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 5 - 78 | 9.2e-07 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 704 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 602 |
| Acc36I | ACCTGC | 1 cut(s) | 704 |
| AccB1I | GGYRCC | 2 cut(s) | 432, 611 |
| AciI | CCGC | 7 cut(s) | 45, 176, 188, 380, 430, 639, 677 |
| AclWI | GGATC | 1 cut(s) | 301 |
| AcoI | YGGCCR | 1 cut(s) | 42 |
| AcuI | CTGAAG | 2 cut(s) | 653, 1066 |
| AcvI | CACGTG | 1 cut(s) | 1006 |
| AfaI | GTAC | 1 cut(s) | 1040 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 745 |
| AgsI | TTSAA | 8 cut(s) | 53, 61, 166, 249, 445, 659, 690, 761 |
| AjiI | CACGTC | 1 cut(s) | 271 |
| AjnI | CCWGG | 3 cut(s) | 14, 352, 395 |
| AleI | CACNNNNGTG | 1 cut(s) | 1008 |
| AluBI | AGCT | 9 cut(s) | 154, 439, 529, 662, 682, 889, 921, 989, 1086 |
| AluI | AGCT | 9 cut(s) | 154, 439, 529, 662, 682, 889, 921, 989, 1086 |
| Alw21I | GWGCWC | 1 cut(s) | 721 |
| Alw26I | GTCTC | 2 cut(s) | 264, 610 |
| AlwI | GGATC | 1 cut(s) | 301 |
| AoxI | GGCC | 2 cut(s) | 12, 42 |
| ApeKI | GCWGC | 2 cut(s) | 416, 662 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 242, 274 |
| AseI | ATTAAT | 1 cut(s) | 33 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 765 |
| AspS9I | GGNCC | 2 cut(s) | 350, 741 |
| AsuC2I | CCSGG | 1 cut(s) | 533 |
| AsuHPI | GGTGA | 1 cut(s) | 596 |
| AvaII | GGWCC | 2 cut(s) | 350, 741 |
| BaeGI | GKGCMC | 1 cut(s) | 538 |
| BanI | GGYRCC | 2 cut(s) | 432, 611 |
| BbrPI | CACGTG | 1 cut(s) | 1006 |
| BbsI | GAAGAC | 1 cut(s) | 1072 |
| Bbv12I | GWGCWC | 1 cut(s) | 721 |
| BbvI | GCAGC | 2 cut(s) | 428, 649 |
| BccI | CCATC | 2 cut(s) | 94, 650 |
| BceAI | ACGGC | 2 cut(s) | 9, 32 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 930, 964 |
| BciT130I | CCWGG | 3 cut(s) | 16, 354, 397 |
| BclI | TGATCA | 1 cut(s) | 523 |
| BcnI | CCSGG | 1 cut(s) | 533 |
| BcoDI | GTCTC | 2 cut(s) | 264, 610 |
| BfaI | CTAG | 1 cut(s) | 230 |
| BfmI | CTRYAG | 3 cut(s) | 149, 414, 711 |
| BfuAI | ACCTGC | 1 cut(s) | 704 |
| BisI | GCNGC | 3 cut(s) | 45, 417, 663 |
| BlsI | GCNGC | 3 cut(s) | 46, 418, 664 |
| Bme1390I | CCNGG | 4 cut(s) | 16, 354, 397, 533 |
| Bme18I | GGWCC | 2 cut(s) | 350, 741 |
| BmgBI | CACGTC | 1 cut(s) | 271 |
| BmgT120I | GGNCC | 2 cut(s) | 350, 741 |
| BmiI | GGNNCC | 4 cut(s) | 434, 613, 750, 768 |
| BmrFI | CCNGG | 4 cut(s) | 16, 354, 397, 533 |
| BmsI | GCATC | 4 cut(s) | 88, 417, 607, 716 |
| BpiI | GAAGAC | 1 cut(s) | 1072 |
| Bpu10I | CCTNAGC | 1 cut(s) | 917 |
| BpuMI | CCSGG | 1 cut(s) | 533 |
| Bsa29I | ATCGAT | 1 cut(s) | 89 |
| BsaAI | YACGTR | 1 cut(s) | 1006 |
| BsaJI | CCNNGG | 3 cut(s) | 25, 325, 744 |
| BsaWI | WCCGGW | 2 cut(s) | 197, 608 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 733, 763 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 745 |
| Bse3DI | GCAATG | 3 cut(s) | 183, 752, 948 |
| BseBI | CCWGG | 3 cut(s) | 16, 354, 397 |
| BseCI | ATCGAT | 1 cut(s) | 89 |
| BseDI | CCNNGG | 3 cut(s) | 25, 325, 744 |
| BseGI | GGATG | 4 cut(s) | 124, 432, 936, 1024 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 745 |
| BseMI | GCAATG | 3 cut(s) | 183, 752, 948 |
| BseMII | CTCAG | 2 cut(s) | 981, 1080 |
| BseRI | GAGGAG | 1 cut(s) | 505 |
| BseSI | GKGCMC | 1 cut(s) | 538 |
| BseX3I | CGGCCG | 1 cut(s) | 42 |
| BseXI | GCAGC | 2 cut(s) | 428, 649 |
| BseYI | CCCAGC | 1 cut(s) | 872 |
| BsgI | GTGCAG | 1 cut(s) | 825 |
| Bsh1285I | CGRYCG | 1 cut(s) | 45 |
| BshFI | GGCC | 2 cut(s) | 14, 44 |
| BshNI | GGYRCC | 2 cut(s) | 432, 611 |
| BshVI | ATCGAT | 1 cut(s) | 89 |
| BsiEI | CGRYCG | 1 cut(s) | 45 |
| BsiHKAI | GWGCWC | 1 cut(s) | 721 |
| BsiSI | CCGG | 5 cut(s) | 41, 198, 532, 609, 739 |
| BslFI | GGGAC | 1 cut(s) | 204 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 745 |
| BsmAI | GTCTC | 2 cut(s) | 264, 610 |
| BsmBI | CGTCTC | 2 cut(s) | 264, 610 |
| BsmFI | GGGAC | 1 cut(s) | 204 |
| BsnI | GGCC | 2 cut(s) | 14, 44 |
| Bsp1286I | GDGCHC | 2 cut(s) | 538, 721 |
| Bsp143I | GATC | 3 cut(s) | 293, 523, 997 |
| BspACI | CCGC | 7 cut(s) | 45, 176, 188, 380, 430, 639, 677 |
| BspANI | GGCC | 2 cut(s) | 14, 44 |
| BspCNI | CTCAG | 2 cut(s) | 982, 1081 |
| BspDI | ATCGAT | 1 cut(s) | 89 |
| BspLI | GGNNCC | 4 cut(s) | 434, 613, 750, 768 |
| BspMAI | CTGCAG | 2 cut(s) | 418, 715 |
| BspMI | ACCTGC | 1 cut(s) | 704 |
| BspPI | GGATC | 1 cut(s) | 301 |
| BspQI | GCTCTTC | 1 cut(s) | 672 |
| BspT107I | GGYRCC | 2 cut(s) | 432, 611 |
| BsrDI | GCAATG | 3 cut(s) | 183, 752, 948 |
| BssECI | CCNNGG | 3 cut(s) | 25, 325, 744 |
| BssMI | GATC | 3 cut(s) | 293, 523, 997 |
| BssT1I | CCWWGG | 1 cut(s) | 744 |
| Bst2UI | CCWGG | 3 cut(s) | 16, 354, 397 |
| Bst4CI | ACNGT | 3 cut(s) | 170, 195, 227 |
| Bst6I | CTCTTC | 2 cut(s) | 672, 756 |
| BstBAI | YACGTR | 1 cut(s) | 1006 |
| BstC8I | GCNNGC | 5 cut(s) | 437, 485, 628, 684, 1098 |
| BstDEI | CTNAG | 3 cut(s) | 917, 990, 1089 |
| BstDSI | CCRYGG | 2 cut(s) | 25, 325 |
| BstF5I | GGATG | 4 cut(s) | 124, 432, 936, 1024 |
| BstKTI | GATC | 3 cut(s) | 296, 526, 1000 |
| BstMAI | GTCTC | 2 cut(s) | 264, 610 |
| BstMBI | GATC | 3 cut(s) | 293, 523, 997 |
| BstMCI | CGRYCG | 1 cut(s) | 45 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 436, 683, 725 |
| BstNI | CCWGG | 3 cut(s) | 16, 354, 397 |
| BstSCI | CCNGG | 4 cut(s) | 14, 352, 395, 531 |
| BstSFI | CTRYAG | 3 cut(s) | 149, 414, 711 |
| BstSLI | GKGCMC | 1 cut(s) | 538 |
| BstV1I | GCAGC | 2 cut(s) | 428, 649 |
| BstV2I | GAAGAC | 1 cut(s) | 1072 |
| BstX2I | RGATCY | 1 cut(s) | 293 |
| BstYI | RGATCY | 1 cut(s) | 293 |
| BstZI | CGGCCG | 1 cut(s) | 42 |
| Bsu15I | ATCGAT | 1 cut(s) | 89 |
| BsuRI | GGCC | 2 cut(s) | 14, 44 |
| BsuTUI | ATCGAT | 1 cut(s) | 89 |
| BtgI | CCRYGG | 2 cut(s) | 25, 325 |
| BtrI | CACGTC | 1 cut(s) | 271 |
| BtsCI | GGATG | 4 cut(s) | 124, 432, 936, 1024 |
| BtsI | GCAGTG | 1 cut(s) | 842 |
| BtsIMutI | CAGTG | 2 cut(s) | 842, 1057 |
| BveI | ACCTGC | 1 cut(s) | 704 |
| Cac8I | GCNNGC | 5 cut(s) | 437, 485, 628, 684, 1098 |
| Cfr13I | GGNCC | 2 cut(s) | 350, 741 |
| ClaI | ATCGAT | 1 cut(s) | 89 |
| CsiI | ACCWGGT | 1 cut(s) | 395 |
| Csp6I | GTAC | 1 cut(s) | 1039 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 382, 417 |
| CviAII | CATG | 4 cut(s) | 263, 306, 342, 927 |
| CviQI | GTAC | 1 cut(s) | 1039 |
| DdeI | CTNAG | 3 cut(s) | 917, 990, 1089 |
| DpnI | GATC | 3 cut(s) | 295, 525, 999 |
| DpnII | GATC | 3 cut(s) | 293, 523, 997 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 602 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 602 |
| EaeI | YGGCCR | 1 cut(s) | 42 |
| EagI | CGGCCG | 1 cut(s) | 42 |
| Eam1104I | CTCTTC | 2 cut(s) | 672, 756 |
| EarI | CTCTTC | 2 cut(s) | 672, 756 |
| EciI | GGCGGA | 1 cut(s) | 628 |
| EclXI | CGGCCG | 1 cut(s) | 42 |
| Eco130I | CCWWGG | 1 cut(s) | 744 |
| Eco32I | GATATC | 2 cut(s) | 235, 406 |
| Eco47I | GGWCC | 2 cut(s) | 350, 741 |
| Eco52I | CGGCCG | 1 cut(s) | 42 |
| Eco57I | CTGAAG | 2 cut(s) | 653, 1066 |
| Eco72I | CACGTG | 1 cut(s) | 1006 |
| EcoRII | CCWGG | 3 cut(s) | 14, 352, 395 |
| EcoRV | GATATC | 2 cut(s) | 235, 406 |
| EcoT14I | CCWWGG | 1 cut(s) | 744 |
| EcoT22I | ATGCAT | 1 cut(s) | 1076 |
| ErhI | CCWWGG | 1 cut(s) | 744 |
| Esp3I | CGTCTC | 2 cut(s) | 264, 610 |
| FaeI | CATG | 4 cut(s) | 266, 309, 345, 930 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 651, 683, 666, 698 |
| FaqI | GGGAC | 1 cut(s) | 204 |
| FatI | CATG | 4 cut(s) | 262, 305, 341, 926 |
| FauI | CCCGC | 1 cut(s) | 181 |
| FbaI | TGATCA | 1 cut(s) | 523 |
| Fnu4HI | GCNGC | 3 cut(s) | 45, 417, 663 |
| FokI | GGATG | 4 cut(s) | 131, 439, 943, 1031 |
| Fsp4HI | GCNGC | 3 cut(s) | 45, 417, 663 |
| FspBI | CTAG | 1 cut(s) | 230 |
| GluI | GCNGC | 3 cut(s) | 45, 417, 663 |
| GsaI | CCCAGC | 1 cut(s) | 876 |
| HaeIII | GGCC | 2 cut(s) | 14, 44 |
| HapII | CCGG | 5 cut(s) | 41, 198, 532, 609, 739 |
| Hin1II | CATG | 4 cut(s) | 266, 309, 345, 930 |
| HincII | GTYRAC | 1 cut(s) | 268 |
| HindII | GTYRAC | 1 cut(s) | 268 |
| HinfI | GANTC | 8 cut(s) | 557, 577, 596, 647, 733, 826, 947, 1091 |
| HpaII | CCGG | 5 cut(s) | 41, 198, 532, 609, 739 |
| HphI | GGTGA | 1 cut(s) | 596 |
| Hpy166II | GTNNAC | 3 cut(s) | 268, 393, 1039 |
| Hpy188III | TCNNGA | 1 cut(s) | 230 |
| Hpy8I | GTNNAC | 3 cut(s) | 268, 393, 1039 |
| Hpy99I | CGWCG | 1 cut(s) | 259 |
| HpyAV | CCTTC | 3 cut(s) | 106, 631, 805 |
| HpyCH4III | ACNGT | 3 cut(s) | 170, 195, 227 |
| HpyCH4IV | ACGT | 6 cut(s) | 64, 270, 389, 538, 603, 1005 |
| HpyCH4V | TGCA | 7 cut(s) | 305, 416, 544, 713, 778, 842, 1074 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 436, 683, 725 |
| HpyF3I | CTNAG | 3 cut(s) | 917, 990, 1089 |
| HpySE526I | ACGT | 6 cut(s) | 64, 270, 389, 538, 603, 1005 |
| Hsp92II | CATG | 4 cut(s) | 266, 309, 345, 930 |
| Ksp22I | TGATCA | 1 cut(s) | 523 |
| Kzo9I | GATC | 3 cut(s) | 293, 523, 997 |
| LguI | GCTCTTC | 1 cut(s) | 672 |
| LmnI | GCTCC | 3 cut(s) | 534, 679, 754 |
| Lsp1109I | GCAGC | 2 cut(s) | 428, 649 |
| LweI | GCATC | 4 cut(s) | 88, 417, 607, 716 |
| MabI | ACCWGGT | 1 cut(s) | 395 |
| MaeI | CTAG | 1 cut(s) | 230 |
| MaeII | ACGT | 6 cut(s) | 64, 270, 389, 538, 603, 1005 |
| MalI | GATC | 3 cut(s) | 295, 525, 999 |
| MboI | GATC | 3 cut(s) | 293, 523, 997 |
| MboII | GAAGA | 7 cut(s) | 400, 522, 659, 773, 808, 992, 1072 |
| MflI | RGATCY | 1 cut(s) | 293 |
| MhlI | GDGCHC | 2 cut(s) | 538, 721 |
| MluCI | AATT | 2 cut(s) | 465, 935 |
| MlyI | GAGTC | 5 cut(s) | 590, 656, 820, 956, 1100 |
| MmeI | TCCRAC | 1 cut(s) | 675 |
| MnlI | CCTC | 6 cut(s) | 268, 483, 641, 757, 853, 870 |
| Mph1103I | ATGCAT | 1 cut(s) | 1076 |
| MroXI | GAANNNNTTC | 1 cut(s) | 765 |
| MseI | TTAA | 3 cut(s) | 33, 143, 1102 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1008 |
| MspA1I | CMGCKG | 1 cut(s) | 439 |
| MspI | CCGG | 5 cut(s) | 41, 198, 532, 609, 739 |
| MspR9I | CCNGG | 4 cut(s) | 16, 354, 397, 533 |
| MvaI | CCWGG | 3 cut(s) | 16, 354, 397 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 436, 683, 725 |
| NciI | CCSGG | 1 cut(s) | 533 |
| NdeII | GATC | 3 cut(s) | 293, 523, 997 |
| NlaIII | CATG | 4 cut(s) | 266, 309, 345, 930 |
| NlaIV | GGNNCC | 4 cut(s) | 434, 613, 750, 768 |
| NsiI | ATGCAT | 1 cut(s) | 1076 |
| OliI | CACNNNNGTG | 1 cut(s) | 1008 |
| PaqCI | CACCTGC | 1 cut(s) | 704 |
| PciSI | GCTCTTC | 1 cut(s) | 672 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 70 |
| PdmI | GAANNNNTTC | 1 cut(s) | 765 |
| PfeI | GAWTC | 3 cut(s) | 557, 577, 733 |
| PfoI | TCCNGGA | 1 cut(s) | 352 |
| PkrI | GCNGC | 3 cut(s) | 46, 418, 664 |
| PleI | GAGTC | 5 cut(s) | 590, 655, 820, 955, 1099 |
| PmaCI | CACGTG | 1 cut(s) | 1006 |
| PmlI | CACGTG | 1 cut(s) | 1006 |
| PpsI | GAGTC | 5 cut(s) | 590, 655, 820, 955, 1099 |
| Ppu21I | YACGTR | 1 cut(s) | 1006 |
| PshBI | ATTAAT | 1 cut(s) | 33 |
| Psp6I | CCWGG | 3 cut(s) | 14, 352, 395 |
| PspCI | CACGTG | 1 cut(s) | 1006 |
| PspFI | CCCAGC | 1 cut(s) | 872 |
| PspGI | CCWGG | 3 cut(s) | 14, 352, 395 |
| PspN4I | GGNNCC | 4 cut(s) | 434, 613, 750, 768 |
| PspPI | GGNCC | 2 cut(s) | 350, 741 |
| PstI | CTGCAG | 2 cut(s) | 418, 715 |
| PsuI | RGATCY | 1 cut(s) | 293 |
| PvuII | CAGCTG | 1 cut(s) | 439 |
| RsaI | GTAC | 1 cut(s) | 1040 |
| RsaNI | GTAC | 1 cut(s) | 1039 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1008 |
| SapI | GCTCTTC | 1 cut(s) | 672 |
| SaqAI | TTAA | 3 cut(s) | 33, 143, 1102 |
| SatI | GCNGC | 3 cut(s) | 45, 417, 663 |
| Sau3AI | GATC | 3 cut(s) | 293, 523, 997 |
| Sau96I | GGNCC | 2 cut(s) | 350, 741 |
| SchI | GAGTC | 5 cut(s) | 590, 656, 820, 956, 1100 |
| ScrFI | CCNGG | 4 cut(s) | 16, 354, 397, 533 |
| SduI | GDGCHC | 2 cut(s) | 538, 721 |
| SexAI | ACCWGGT | 1 cut(s) | 395 |
| SfaNI | GCATC | 4 cut(s) | 88, 417, 607, 716 |
| SfcI | CTRYAG | 3 cut(s) | 149, 414, 711 |
| SinI | GGWCC | 2 cut(s) | 350, 741 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1008 |
| Sse9I | AATT | 2 cut(s) | 465, 935 |
| SsiI | CCGC | 7 cut(s) | 45, 176, 188, 380, 430, 639, 677 |
| SspMI | CTAG | 1 cut(s) | 230 |
| StyD4I | CCNGG | 4 cut(s) | 14, 352, 395, 531 |
| StyI | CCWWGG | 1 cut(s) | 744 |
| TaaI | ACNGT | 3 cut(s) | 170, 195, 227 |
| TaiI | ACGT | 6 cut(s) | 67, 273, 392, 541, 606, 1008 |
| TaqI | TCGA | 4 cut(s) | 73, 89, 645, 1065 |
| TasI | AATT | 2 cut(s) | 465, 935 |
| TatI | WGTACW | 1 cut(s) | 1038 |
| TauI | GCSGC | 1 cut(s) | 47 |
| TfiI | GAWTC | 3 cut(s) | 557, 577, 733 |
| Tru1I | TTAA | 3 cut(s) | 33, 143, 1102 |
| Tru9I | TTAA | 3 cut(s) | 33, 143, 1102 |
| TscAI | CASTG | 2 cut(s) | 849, 1057 |
| TseI | GCWGC | 2 cut(s) | 416, 662 |
| TspDTI | ATGAA | 5 cut(s) | 17, 149, 172, 451, 947 |
| TspGWI | ACGGA | 2 cut(s) | 227, 306 |
| TspRI | CASTG | 2 cut(s) | 849, 1057 |
| VpaK11BI | GGWCC | 2 cut(s) | 350, 741 |
| VspI | ATTAAT | 1 cut(s) | 33 |
| XbaI | TCTAGA | 1 cut(s) | 229 |
| XmnI | GAANNNNTTC | 1 cut(s) | 765 |
| XspI | CTAG | 1 cut(s) | 230 |
| Zsp2I | ATGCAT | 1 cut(s) | 1076 |