Rh1AG155100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000372
Physical Location & Seq
Reverse (-)
28986428 .. 28988939
2512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG155100.1

Sequence Viewer

Length: 369 bp
ATGGCATTTCCAAGTAAAAAATGTTGTTGGTCAAAGTGTCGGATGGTAATTATGAAAATGACCATTTTGTTTTTCATGCGTAGAAGCTGCAGACTACTGGTGATCGATGCTAGGGATAGTCCCTGGGTACGGTTTTTCATCGCTGGCCAACTCAAACGTGCTTTTCTTCAGCTCGACCGGGTTCAACGCTCAGGTGACAGTCCAAGACAACGAGCCGAAAGAGTGGCTCCTGAATCGGTCAGGAGGGAGGTGATCAGGGCCAGCATGTTCCGGGAGTGCAAGAAGAGGAGGTTTTTCGAGAACAACCAGGACAAGAAGAAGAGAGTGGGCGCCATGTCCAAGACAAAGAAGAAGAGAAAGGCTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

14.66

Weight (kDa)

11.54

Isoelectric Point (pI)

76.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 329
AcoI YGGCCR 1 cut(s) 145
AcuI CTGAAG 1 cut(s) 152
AcyI GRCGYC 1 cut(s) 330
AfaI GTAC 1 cut(s) 129
AfiI CCNNNNNNNGG 1 cut(s) 129
AgsI TTSAA 1 cut(s) 185
AjnI CCWGG 2 cut(s) 122, 306
AluBI AGCT 2 cut(s) 87, 172
AluI AGCT 2 cut(s) 87, 172
AoxI GGCC 2 cut(s) 145, 258
ApeKI GCWGC 1 cut(s) 87
AspLEI GCGC 1 cut(s) 332
AspS9I GGNCC 1 cut(s) 258
AsuC2I CCSGG 2 cut(s) 179, 272
AsuHPI GGTGA 3 cut(s) 112, 206, 262
BalI TGGCCA 1 cut(s) 147
BanI GGYRCC 1 cut(s) 329
BbvI GCAGC 1 cut(s) 74
BccI CCATC 1 cut(s) 37
BciT130I CCWGG 2 cut(s) 124, 308
BclI TGATCA 1 cut(s) 252
BcnI CCSGG 2 cut(s) 179, 272
BfaI CTAG 2 cut(s) 111, 363
BfmI CTRYAG 1 cut(s) 88
BfoI RGCGCY 1 cut(s) 333
BisI GCNGC 1 cut(s) 88
BlsI GCNGC 1 cut(s) 89
Bme1390I CCNGG 4 cut(s) 124, 179, 272, 308
BmgT120I GGNCC 1 cut(s) 258
BmiI GGNNCC 2 cut(s) 228, 331
BmrFI CCNGG 4 cut(s) 124, 179, 272, 308
BmsI GCATC 1 cut(s) 97
Bpu10I CCTNAGC 1 cut(s) 190
BpuMI CCSGG 2 cut(s) 179, 272
Bsa29I ATCGAT 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 330
BsaJI CCNNGG 2 cut(s) 122, 123
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse1I ACTGG 1 cut(s) 102
BseBI CCWGG 2 cut(s) 124, 308
BseCI ATCGAT 1 cut(s) 105
BseDI CCNNGG 2 cut(s) 122, 123
BseGI GGATG 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 102
BseRI GAGGAG 1 cut(s) 301
BseXI GCAGC 1 cut(s) 74
Bsh1285I CGRYCG 1 cut(s) 178
BshFI GGCC 2 cut(s) 147, 260
BshNI GGYRCC 1 cut(s) 329
BshVI ATCGAT 1 cut(s) 105
BsiEI CGRYCG 1 cut(s) 178
BsiSI CCGG 2 cut(s) 178, 271
BslFI GGGAC 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 105
BsnI GGCC 2 cut(s) 147, 260
Bsp143I GATC 2 cut(s) 102, 252
BspANI GGCC 2 cut(s) 147, 260
BspCNI CTCAG 1 cut(s) 203
BspDI ATCGAT 1 cut(s) 105
BspLI GGNNCC 2 cut(s) 228, 331
BspMAI CTGCAG 1 cut(s) 92
BspT107I GGYRCC 1 cut(s) 329
BsrI ACTGG 1 cut(s) 102
BssECI CCNNGG 2 cut(s) 122, 123
BssMI GATC 2 cut(s) 102, 252
BssNI GRCGYC 1 cut(s) 330
Bst2UI CCWGG 2 cut(s) 124, 308
Bst4CI ACNGT 2 cut(s) 132, 200
Bst6I CTCTTC 3 cut(s) 278, 314, 347
BstACI GRCGYC 1 cut(s) 330
BstC8I GCNNGC 2 cut(s) 145, 262
BstDEI CTNAG 1 cut(s) 190
BstF5I GGATG 1 cut(s) 48
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 1 cut(s) 332
BstKTI GATC 2 cut(s) 105, 255
BstMBI GATC 2 cut(s) 102, 252
BstMCI CGRYCG 1 cut(s) 178
BstNI CCWGG 2 cut(s) 124, 308
BstNSI RCATGY 1 cut(s) 268
BstSCI CCNGG 4 cut(s) 122, 177, 270, 306
BstSFI CTRYAG 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 74
Bsu15I ATCGAT 1 cut(s) 105
BsuRI GGCC 2 cut(s) 147, 260
BsuTUI ATCGAT 1 cut(s) 105
BtgZI GCGATG 1 cut(s) 124
BtsCI GGATG 1 cut(s) 48
Cac8I GCNNGC 2 cut(s) 145, 262
CfoI GCGC 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 258
ClaI ATCGAT 1 cut(s) 105
Csp6I GTAC 1 cut(s) 128
CviAII CATG 3 cut(s) 76, 265, 334
CviJI RGCY 7 cut(s) 87, 147, 172, 215, 227, 260, 362
CviKI_1 RGCY 7 cut(s) 87, 147, 172, 215, 227, 260, 362
CviQI GTAC 1 cut(s) 128
DdeI CTNAG 1 cut(s) 190
DinI GGCGCC 1 cut(s) 331
DpnI GATC 2 cut(s) 104, 254
DpnII GATC 2 cut(s) 102, 252
EaeI YGGCCR 1 cut(s) 145
Eam1104I CTCTTC 3 cut(s) 278, 314, 347
EarI CTCTTC 3 cut(s) 278, 314, 347
Eco57I CTGAAG 1 cut(s) 152
EcoRII CCWGG 2 cut(s) 122, 306
EgeI GGCGCC 1 cut(s) 331
EheI GGCGCC 1 cut(s) 331
FaeI CATG 3 cut(s) 79, 268, 337
FaiI YATR 4 cut(s) 53, 77, 266, 335
FaqI GGGAC 1 cut(s) 105
FatI CATG 3 cut(s) 75, 264, 333
FbaI TGATCA 1 cut(s) 252
Fnu4HI GCNGC 1 cut(s) 88
FokI GGATG 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 88
FspBI CTAG 2 cut(s) 111, 363
GlaI GCGC 1 cut(s) 331
GluI GCNGC 1 cut(s) 88
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 2 cut(s) 147, 260
HapII CCGG 2 cut(s) 178, 271
HhaI GCGC 1 cut(s) 332
Hin1I GRCGYC 1 cut(s) 330
Hin1II CATG 3 cut(s) 79, 268, 337
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HinfI GANTC 1 cut(s) 233
HpaII CCGG 2 cut(s) 178, 271
HphI GGTGA 3 cut(s) 112, 206, 262
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 3 cut(s) 230, 241, 298
HpyCH4III ACNGT 2 cut(s) 132, 200
HpyCH4IV ACGT 1 cut(s) 157
HpyCH4V TGCA 2 cut(s) 90, 279
HpyF3I CTNAG 1 cut(s) 190
HpySE526I ACGT 1 cut(s) 157
Hsp92I GRCGYC 1 cut(s) 330
Hsp92II CATG 3 cut(s) 79, 268, 337
HspAI GCGC 1 cut(s) 330
KasI GGCGCC 1 cut(s) 329
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 2 cut(s) 102, 252
LmnI GCTCC 1 cut(s) 232
Lsp1109I GCAGC 1 cut(s) 74
LweI GCATC 1 cut(s) 97
MaeI CTAG 2 cut(s) 111, 363
MaeII ACGT 1 cut(s) 157
MaeIII GTNAC 1 cut(s) 194
MalI GATC 2 cut(s) 104, 254
MboI GATC 2 cut(s) 102, 252
MboII GAAGA 6 cut(s) 158, 295, 328, 331, 361, 364
MlsI TGGCCA 1 cut(s) 147
MluCI AATT 1 cut(s) 48
MluNI TGGCCA 1 cut(s) 147
Mly113I GGCGCC 1 cut(s) 330
MmeI TCCRAC 1 cut(s) 20
MnlI CCTC 4 cut(s) 237, 241, 279, 282
Mox20I TGGCCA 1 cut(s) 147
MscI TGGCCA 1 cut(s) 147
Msp20I TGGCCA 1 cut(s) 147
MspI CCGG 2 cut(s) 178, 271
MspR9I CCNGG 4 cut(s) 124, 179, 272, 308
MvaI CCWGG 2 cut(s) 124, 308
NarI GGCGCC 1 cut(s) 330
NciI CCSGG 2 cut(s) 179, 272
NdeII GATC 2 cut(s) 102, 252
NlaIII CATG 3 cut(s) 79, 268, 337
NlaIV GGNNCC 2 cut(s) 228, 331
NmuCI GTSAC 1 cut(s) 194
NspI RCATGY 1 cut(s) 268
PasI CCCWGGG 1 cut(s) 123
PfeI GAWTC 1 cut(s) 233
PfoI TCCNGGA 1 cut(s) 270
PkrI GCNGC 1 cut(s) 89
PluTI GGCGCC 1 cut(s) 333
Psp6I CCWGG 2 cut(s) 122, 306
PspGI CCWGG 2 cut(s) 122, 306
PspN4I GGNNCC 2 cut(s) 228, 331
PspPI GGNCC 1 cut(s) 258
PstI CTGCAG 1 cut(s) 92
RsaI GTAC 1 cut(s) 129
RsaNI GTAC 1 cut(s) 128
SatI GCNGC 1 cut(s) 88
Sau3AI GATC 2 cut(s) 102, 252
Sau96I GGNCC 1 cut(s) 258
ScrFI CCNGG 4 cut(s) 124, 179, 272, 308
SetI ASST 7 cut(s) 89, 160, 174, 196, 252, 293, 368
SfaNI GCATC 1 cut(s) 97
SfcI CTRYAG 1 cut(s) 88
SfoI GGCGCC 1 cut(s) 331
Sse9I AATT 1 cut(s) 48
SspDI GGCGCC 1 cut(s) 329
SspMI CTAG 2 cut(s) 111, 363
StyD4I CCNGG 4 cut(s) 122, 177, 270, 306
TaaI ACNGT 2 cut(s) 132, 200
TaiI ACGT 1 cut(s) 160
TaqI TCGA 3 cut(s) 105, 174, 297
TaqII GACCGA 1 cut(s) 226
TasI AATT 1 cut(s) 48
TfiI GAWTC 1 cut(s) 233
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 1 cut(s) 87
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 3 cut(s) 64, 68, 127
XceI RCATGY 1 cut(s) 268
XspI CTAG 2 cut(s) 111, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.