RLG00000011591

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000372
Physical Location & Seq
Reverse (-)
10770777 .. 10772487
1711 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011591

Sequence Viewer

Length: 375 bp
ATGGTGAGGTCGAGAGGGAGAGCCCAAGCGACGGAGTTGTGCTTGGAGTCTCGTCGTCTCGCCGAGCGCTTCAATGAGCTTGGTCTGATCGGCGACGGAGTCGCGGGAGCCGAGGATCCGTTCGAAGGAGAGATTGATGGCGAAGGGCGGCGAGTCAGAGAAGTCAAGGAAGGTCTCCAGGAGGTGGTCGCGGTCAAGGAACTTGACGTGGTCTATTGCATTGTGCGTGGACTGATGCAAGCTGTGTCATTTGGTCCTATCCCAGCAGTAGAAATGGTTCAGAAAACAGAAGGCACGACCGTATGTCATGATCCTATCCCAGCAGTAATACTGACAGTATCAGATTTCTGTCAAATGCAAACGCACCTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.6

Weight (kDa)

4.94

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 184
AccII CGCG 2 cut(s) 104, 191
AciI CCGC 3 cut(s) 104, 148, 191
AclWI GGATC 3 cut(s) 110, 123, 305
AfeI AGCGCT 1 cut(s) 68
AfiI CCNNNNNNNGG 3 cut(s) 31, 125, 184
AgsI TTSAA 1 cut(s) 73
AhdI GACNNNNNGTC 1 cut(s) 303
AjiI CACGTC 1 cut(s) 208
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 2 cut(s) 79, 242
AluI AGCT 2 cut(s) 79, 242
Alw26I GTCTC 3 cut(s) 54, 62, 179
AlwI GGATC 3 cut(s) 110, 123, 305
Aor51HI AGCGCT 1 cut(s) 68
Asp700I GAANNNNTTC 1 cut(s) 276
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 123
AvaII GGWCC 1 cut(s) 254
BamHI GGATCC 1 cut(s) 115
BanII GRGCYC 1 cut(s) 25
BccI CCATC 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 179
BcoDI GTCTC 3 cut(s) 54, 62, 179
BfoI RGCGCY 1 cut(s) 70
BisI GCNGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 179
Bme18I GGWCC 1 cut(s) 254
BmeRI GACNNNNNGTC 1 cut(s) 303
BmgBI CACGTC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 2 cut(s) 109, 117
BmrFI CCNGG 1 cut(s) 179
BmsI GCATC 1 cut(s) 225
BpmI CTGGAG 1 cut(s) 161
Bpu14I TTCGAA 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 353
BsaI GGTCTC 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 111
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 125, 184
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 111
BseLI CCNNNNNNNGG 3 cut(s) 31, 125, 184
BseYI CCCAGC 2 cut(s) 262, 319
Bsh1236I CGCG 2 cut(s) 104, 191
Bsh1285I CGRYCG 1 cut(s) 300
BsiEI CGRYCG 1 cut(s) 300
BslI CCNNNNNNNGG 3 cut(s) 31, 125, 184
BsmAI GTCTC 3 cut(s) 54, 62, 179
BsmBI CGTCTC 1 cut(s) 62
Bso31I GGTCTC 1 cut(s) 179
Bsp119I TTCGAA 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 3 cut(s) 87, 115, 310
BspACI CCGC 3 cut(s) 104, 148, 191
BspFNI CGCG 2 cut(s) 104, 191
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 2 cut(s) 109, 117
BspPI GGATC 3 cut(s) 110, 123, 305
BspT104I TTCGAA 1 cut(s) 123
BspTNI GGTCTC 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 3 cut(s) 87, 115, 310
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 2 cut(s) 301, 337
BstBI TTCGAA 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 240
BstFNI CGCG 2 cut(s) 104, 191
BstH2I RGCGCY 1 cut(s) 70
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 3 cut(s) 90, 118, 313
BstMAI GTCTC 3 cut(s) 54, 62, 179
BstMBI GATC 3 cut(s) 87, 115, 310
BstMCI CGRYCG 1 cut(s) 300
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 177
BstUI CGCG 2 cut(s) 104, 191
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BtrI CACGTC 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 240
CciI TCATGA 1 cut(s) 307
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 1 cut(s) 254
CviAII CATG 1 cut(s) 308
CviJI RGCY 4 cut(s) 23, 79, 110, 242
CviKI_1 RGCY 4 cut(s) 23, 79, 110, 242
DpnI GATC 3 cut(s) 89, 117, 312
DpnII GATC 3 cut(s) 87, 115, 310
DriI GACNNNNNGTC 1 cut(s) 303
Eam1105I GACNNNNNGTC 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 25
Eco31I GGTCTC 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 254
Eco47III AGCGCT 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 177
EcoT38I GRGCYC 1 cut(s) 25
Esp3I CGTCTC 1 cut(s) 62
FaeI CATG 1 cut(s) 311
FaiI YATR 2 cut(s) 304, 309
FatI CATG 1 cut(s) 307
FauI CCCGC 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 149
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 149
GlaI GCGC 1 cut(s) 68
GluI GCNGC 1 cut(s) 149
GsaI CCCAGC 2 cut(s) 266, 323
GsuI CTGGAG 1 cut(s) 161
HaeII RGCGCY 1 cut(s) 70
HhaI GCGC 1 cut(s) 69
Hin1II CATG 1 cut(s) 311
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HinfI GANTC 3 cut(s) 47, 99, 153
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 4 cut(s) 87, 158, 282, 343
Hpy188III TCNNGA 2 cut(s) 12, 308
Hpy8I GTNNAC 1 cut(s) 230
Hpy99I CGWCG 3 cut(s) 34, 57, 98
HpyAV CCTTC 4 cut(s) 119, 137, 164, 284
HpyCH4III ACNGT 2 cut(s) 301, 337
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 3 cut(s) 219, 238, 358
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 1 cut(s) 311
HspAI GCGC 1 cut(s) 67
Kzo9I GATC 3 cut(s) 87, 115, 310
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 4 cut(s) 164, 191, 276, 333
LweI GCATC 1 cut(s) 225
MaeII ACGT 1 cut(s) 207
MalI GATC 3 cut(s) 89, 117, 312
MboI GATC 3 cut(s) 87, 115, 310
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 25
MlyI GAGTC 3 cut(s) 56, 108, 162
MnlI CCTC 3 cut(s) 8, 106, 175
MroXI GAANNNNTTC 1 cut(s) 276
MspR9I CCNGG 1 cut(s) 179
MvaI CCWGG 1 cut(s) 179
MvnI CGCG 2 cut(s) 104, 191
NdeII GATC 3 cut(s) 87, 115, 310
NlaIII CATG 1 cut(s) 311
NlaIV GGNNCC 2 cut(s) 109, 117
NmeAIII GCCGAG 2 cut(s) 88, 136
NspV TTCGAA 1 cut(s) 123
PagI TCATGA 1 cut(s) 307
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 276
PflFI GACNNNGTC 2 cut(s) 98, 209
PflMI CCANNNNNTGG 1 cut(s) 184
PfoI TCCNGGA 1 cut(s) 177
PkrI GCNGC 1 cut(s) 150
PleI GAGTC 3 cut(s) 55, 107, 161
PpsI GAGTC 3 cut(s) 55, 107, 161
Psp6I CCWGG 1 cut(s) 177
PspFI CCCAGC 2 cut(s) 262, 319
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 2 cut(s) 109, 117
PspPI GGNCC 1 cut(s) 254
PsrI GAACNNNNNNTAC 2 cut(s) 261, 293
PsuI RGATCY 1 cut(s) 115
PsyI GACNNNGTC 2 cut(s) 98, 209
SatI GCNGC 1 cut(s) 149
Sau3AI GATC 3 cut(s) 87, 115, 310
Sau96I GGNCC 1 cut(s) 254
SchI GAGTC 3 cut(s) 56, 108, 162
ScrFI CCNGG 1 cut(s) 179
SduI GDGCHC 1 cut(s) 25
SetI ASST 7 cut(s) 11, 81, 175, 186, 210, 244, 369
SfaNI GCATC 1 cut(s) 225
SfuI TTCGAA 1 cut(s) 123
SinI GGWCC 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
SsiI CCGC 3 cut(s) 104, 148, 191
StyD4I CCNGG 1 cut(s) 177
TaaI ACNGT 2 cut(s) 301, 337
TaiI ACGT 1 cut(s) 210
TaqI TCGA 2 cut(s) 11, 123
TauI GCSGC 1 cut(s) 151
TspGWI ACGGA 3 cut(s) 47, 108, 111
Tth111I GACNNNGTC 2 cut(s) 98, 209
Van91I CCANNNNNTGG 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 254
XmnI GAANNNNTTC 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.