Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000281.1

Orthogroup ID

OG0000372

Physical Location & Seq

Genomic Coordinates Reverse (-)

63006 .. 64169

Gene Structure 1164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000281.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgccttcatcgcgatctgcaacaaatacgaccgatacgacatctacaagtagaaagactctaacgtctccggtgccgatgccttcgctcgcctctattccaccatcgagtccgacattgaagctgctcttcaggtcgaaagcggagcttgcttcaaaagaaaaaagtatggcatctgcaggtgctctgactgccaagattcgccggaccaaggctccattgcttgaagaggttcccaagttgcagagattggctgtaaagaagattggcatgcacttcctctgcatatatgctagaacttgtttagcgctggaaggtgattttggatgggtattgattggacaaaagcttttgaagagaattcttggatcttggcagatgatttcgccgaagggttctcaaatgactccgaacctttctgcactgctgaacacttttgaggaaacattggctgagaggttgagaaagctcaacccaaaagataacaatgatgtccttagcttgtcatggatgaaattggcaatggagtcgctttgtggaactcgtaatgacataaaaactctcatagctgagattgatcttcccatgagtgcttgggatgagaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BPS1

Protein Analysis

202

Amino Acids

22.29

Weight (kDa)

9.8

Isoelectric Point (pI)

51.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000372)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g09000
rosa_chinensis	RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata	RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora	Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa	Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha	Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana	Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	170
AasI	GACNNNNNNGTC	1 cut(s)	64
Acc36I	ACCTGC	1 cut(s)	170
AccB1I	GGYRCC	1 cut(s)	73
AccII	CGCG	1 cut(s)	13
AciI	CCGC	1 cut(s)	143
AclWI	GGATC	1 cut(s)	376
AcsI	RAATTY	1 cut(s)	360
AcuI	CTGAAG	1 cut(s)	115
AfeI	AGCGCT	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	4 cut(s)	121, 156, 227, 355
AjuI	GAANNNNNNNTTGG	2 cut(s)	306, 338
AluBI	AGCT	6 cut(s)	124, 148, 349, 469, 501, 569
AluI	AGCT	6 cut(s)	124, 148, 349, 469, 501, 569
Alw21I	GWGCWC	1 cut(s)	187
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	376
Aor51HI	AGCGCT	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	124
ApoI	RAATTY	1 cut(s)	360
Asp700I	GAANNNNTTC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	207
BanI	GGYRCC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	2 cut(s)	112, 321
BcgI	CGANNNNNNTGC	2 cut(s)	510, 544
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	1 cut(s)	294
BfmI	CTRYAG	1 cut(s)	177
BfoI	RGCGCY	1 cut(s)	311
BfuAI	ACCTGC	1 cut(s)	170
BisI	GCNGC	1 cut(s)	125
BlsI	GCNGC	1 cut(s)	126
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	3 cut(s)	75, 216, 234
BmsI	GCATC	2 cut(s)	69, 182
Bpu10I	CCTNAGC	1 cut(s)	497
BsaJI	CCNNGG	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	70
BsaXI	ACNNNNNCTCC	2 cut(s)	199, 229
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse3DI	GCAATG	2 cut(s)	218, 528
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	3 cut(s)	332, 516, 604
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMI	GCAATG	2 cut(s)	218, 528
BseMII	CTCAG	2 cut(s)	444, 561
BseXI	GCAGC	1 cut(s)	111
BsgI	GTGCAG	1 cut(s)	405
Bsh1236I	CGCG	1 cut(s)	13
Bsh1285I	CGRYCG	1 cut(s)	33
BshNI	GGYRCC	1 cut(s)	73
BsiEI	CGRYCG	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	187
BsiSI	CCGG	2 cut(s)	71, 205
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	72
BsmBI	CGTCTC	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	3 cut(s)	14, 368, 577
Bsp68I	TCGCGA	1 cut(s)	13
BspACI	CCGC	1 cut(s)	143
BspCNI	CTCAG	2 cut(s)	445, 562
BspFNI	CGCG	1 cut(s)	13
BspLI	GGNNCC	3 cut(s)	75, 216, 234
BspMAI	CTGCAG	1 cut(s)	181
BspMI	ACCTGC	1 cut(s)	170
BspPI	GGATC	1 cut(s)	376
BspQI	GCTCTTC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	73
BsrDI	GCAATG	2 cut(s)	218, 528
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	3 cut(s)	14, 368, 577
BssT1I	CCWWGG	1 cut(s)	210
Bst6I	CTCTTC	3 cut(s)	134, 222, 350
BstC8I	GCNNGC	3 cut(s)	90, 150, 272
BstDEI	CTNAG	3 cut(s)	453, 497, 570
BstF5I	GGATG	3 cut(s)	332, 516, 604
BstFNI	CGCG	1 cut(s)	13
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	3 cut(s)	17, 371, 580
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	3 cut(s)	14, 368, 577
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 149, 191
BstNSI	RCATGY	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	177
BstUI	CGCG	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
BtsCI	GGATG	3 cut(s)	332, 516, 604
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	1 cut(s)	422
BtuMI	TCGCGA	1 cut(s)	13
BveI	ACCTGC	1 cut(s)	170
Cac8I	GCNNGC	3 cut(s)	90, 150, 272
CfoI	GCGC	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	207
CviAII	CATG	3 cut(s)	271, 507, 586
CviJI	RGCY	9 cut(s)	124, 148, 215, 254, 349, 452, 469, 501, 569
CviKI_1	RGCY	9 cut(s)	124, 148, 215, 254, 349, 452, 469, 501, 569
DdeI	CTNAG	3 cut(s)	453, 497, 570
DpnI	GATC	3 cut(s)	16, 370, 579
DpnII	GATC	3 cut(s)	14, 368, 577
DrdI	GACNNNNNNGTC	1 cut(s)	64
DseDI	GACNNNNNNGTC	1 cut(s)	64
Eam1104I	CTCTTC	3 cut(s)	134, 222, 350
EarI	CTCTTC	3 cut(s)	134, 222, 350
Eco130I	CCWWGG	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	207
Eco47III	AGCGCT	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	115
EcoRI	GAATTC	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	72
FaeI	CATG	3 cut(s)	274, 510, 589
FaiI	YATR	9 cut(s)	170, 272, 287, 289, 291, 508, 554, 566, 587
FalI	AAGNNNNNCTT	4 cut(s)	113, 145, 132, 164
FatI	CATG	3 cut(s)	270, 506, 585
Fnu4HI	GCNGC	1 cut(s)	125
FokI	GGATG	2 cut(s)	339, 523
Fsp4HI	GCNGC	1 cut(s)	125
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	1 cut(s)	125
HaeII	RGCGCY	1 cut(s)	311
HapII	CCGG	2 cut(s)	71, 205
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	3 cut(s)	274, 510, 589
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	5 cut(s)	58, 109, 199, 406, 527
HpaII	CCGG	2 cut(s)	71, 205
HphI	GGTGA	1 cut(s)	329
Hpy188I	TCNGA	3 cut(s)	114, 189, 411
Hpy188III	TCNNGA	1 cut(s)	12
HpyAV	CCTTC	4 cut(s)	15, 93, 308, 385
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	6 cut(s)	20, 179, 244, 274, 285, 422
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 149, 191
HpyF3I	CTNAG	3 cut(s)	453, 497, 570
HpySE526I	ACGT	1 cut(s)	65
Hsp92II	CATG	3 cut(s)	274, 510, 589
HspAI	GCGC	1 cut(s)	308
Kzo9I	GATC	3 cut(s)	14, 368, 577
LguI	GCTCTTC	1 cut(s)	134
LmnI	GCTCC	2 cut(s)	145, 220
LpnPI	CCDG	5 cut(s)	84, 118, 165, 218, 296
Lsp1109I	GCAGC	1 cut(s)	111
LweI	GCATC	2 cut(s)	69, 182
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	1 cut(s)	65
MalI	GATC	3 cut(s)	16, 370, 579
MboI	GATC	3 cut(s)	14, 368, 577
MboII	GAAGA	5 cut(s)	121, 239, 274, 367, 572
MflI	RGATCY	1 cut(s)	368
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	2 cut(s)	360, 515
MlyI	GAGTC	4 cut(s)	52, 118, 400, 536
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	5 cut(s)	103, 223, 290, 433, 450
MroXI	GAANNNNTTC	1 cut(s)	231
MspI	CCGG	2 cut(s)	71, 205
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	3 cut(s)	10, 149, 191
NdeII	GATC	3 cut(s)	14, 368, 577
NlaIII	CATG	3 cut(s)	274, 510, 589
NlaIV	GGNNCC	3 cut(s)	75, 216, 234
NruI	TCGCGA	1 cut(s)	13
NspI	RCATGY	1 cut(s)	274
PaeI	GCATGC	1 cut(s)	274
PaqCI	CACCTGC	1 cut(s)	170
PciSI	GCTCTTC	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	1 cut(s)	126
PleI	GAGTC	4 cut(s)	52, 117, 400, 535
PpsI	GAGTC	4 cut(s)	52, 117, 400, 535
PspN4I	GGNNCC	3 cut(s)	75, 216, 234
PspPI	GGNCC	1 cut(s)	207
PstI	CTGCAG	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	368
RruI	TCGCGA	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	134
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	3 cut(s)	14, 368, 577
Sau96I	GGNCC	1 cut(s)	207
SchI	GAGTC	4 cut(s)	52, 118, 400, 536
SduI	GDGCHC	1 cut(s)	187
SfaNI	GCATC	2 cut(s)	69, 182
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	207
SphI	GCATGC	1 cut(s)	274
Sse9I	AATT	2 cut(s)	360, 515
SsiI	CCGC	1 cut(s)	143
SspMI	CTAG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	210
TaiI	ACGT	1 cut(s)	68
TaqI	TCGA	2 cut(s)	107, 137
TaqII	GACCGA	1 cut(s)	47
TasI	AATT	2 cut(s)	360, 515
TfiI	GAWTC	1 cut(s)	199
TscAI	CASTG	1 cut(s)	429
TseI	GCWGC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	527
TspRI	CASTG	1 cut(s)	429
VpaK11BI	GGWCC	1 cut(s)	207
XapI	RAATTY	1 cut(s)	360
XceI	RCATGY	1 cut(s)	274
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.