Rmu_sc0003260.1_g000025

CMP-sialic acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003260.1
OG0000372
Physical Location & Seq
Forward (+)
108174 .. 111946
3773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003260.1_g000025.1.cds

Sequence Viewer

Length: 957 bp
atgtcagtttttaattttttgattcccattgtgcccttagaagccaactctctttctatcttcttctcctactcctcctcctccacagacagacagacctccagaagcggttccctatcggaggacctcgcccgcaccagagcttactccgatctcttcgttttcatcaccgacagcgaagtcgatatctctgcttttacagtagcgcctctgatttgttatacacaatcagaagcaggagaccgcgaaatgagccacgccaagagaagcattcctgggactgtgccgatgaagcagaatttcgacgagcggaaaccctcgccggttgtcaccacctccaccggcaagcgcgctcttaattacaatcaggttagttaccttcagaatgacagagacgatagcttgaagaaggcctacaaagagtggactttgatattgtttaatgggattattcctgtgttggttgcgtctgtgctttcgggtttacagtcctctctgtgtcaatgggcttcccagattaaaaagcactcgtcaaacttgatgactgtagagatgtctattgttggaagtttttgcttgttggttagcaccactaagtctctcgaaggagaagctatcagaaaacatgggcttttctatggatggattctactgacttggctagcatatctgcctgataaaaaacgggaatatgtgattgatgatgatgctctaagtcatgcttccgagctttcagtggaaggaagagatgatatcactaatcttgatgagttggtcaaggattacaaaagaaacagaagacgtggaatgctcggatggtttaaactgaaaggtcttagttactctccagagatgcagcaaaaagtaactaaaacattttctggagcatggagaatgagagtagctcttgcctgtgcccttttcatttcacaatataatggactggcattcctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005338 GO:0005342 GO:0005463 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009555 GO:0009653 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010208 GO:0010584 GO:0010605 GO:0010927 GO:0012505 GO:0015075 GO:0015136 GO:0015165 GO:0015318 GO:0015711 GO:0015739 GO:0015780 GO:0015789 GO:0015849 GO:0015931 GO:0015932 GO:0016043 GO:0019222 GO:0022607 GO:0022857 GO:0030162 GO:0030198 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032434 GO:0032435 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0042176 GO:0042177 GO:0043062 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045861 GO:0046942 GO:0046943 GO:0048229 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051341 GO:0051354 GO:0055085 GO:0060255 GO:0061136 GO:0065007 GO:0065009 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0085029 GO:0090481 GO:0098656 GO:1901264 GO:1901505 GO:1901799 GO:1902183 GO:1903050 GO:1903051 GO:1903069 GO:1903070 GO:1903362 GO:1903363 GO:1903573 GO:1903825 GO:1903856 GO:1903857 GO:1904292 GO:1904293 GO:1905039 GO:1905897 GO:1990569 GO:2000058 GO:2000059
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nuc_sug_transp

Protein Analysis

318

Amino Acids

35.82

Weight (kDa)

8.74

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AccBSI CCGCTC 1 cut(s) 310
AccII CGCG 2 cut(s) 246, 351
AciI CCGC 4 cut(s) 108, 133, 244, 310
AcsI RAATTY 1 cut(s) 298
AcuI CTGAAG 1 cut(s) 365
AfiI CCNNNNNNNGG 1 cut(s) 121
AgsI TTSAA 1 cut(s) 406
AjiI CACGTC 1 cut(s) 803
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 5 cut(s) 143, 402, 614, 730, 905
AluI AGCT 5 cut(s) 143, 402, 614, 730, 905
Alw26I GTCTC 3 cut(s) 234, 387, 603
AoxI GGCC 1 cut(s) 411
ApeKI GCWGC 1 cut(s) 856
ApoI RAATTY 1 cut(s) 298
Asp700I GAANNNNTTC 1 cut(s) 109
AspLEI GCGC 3 cut(s) 208, 351, 353
AspS9I GGNCC 1 cut(s) 124
AsuHPI GGTGA 2 cut(s) 160, 322
AsuNHI GCTAGC 1 cut(s) 661
AvaII GGWCC 1 cut(s) 124
BaeGI GKGCMC 2 cut(s) 36, 919
BarI GAAGNNNNNNTAC 2 cut(s) 398, 430
BbsI GAAGAC 1 cut(s) 805
BbvI GCAGC 1 cut(s) 868
BccI CCATC 2 cut(s) 636, 810
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BciT130I CCWGG 1 cut(s) 276
BcoDI GTCTC 3 cut(s) 234, 387, 603
BfaI CTAG 1 cut(s) 662
BfmI CTRYAG 1 cut(s) 546
BfoI RGCGCY 1 cut(s) 209
BisI GCNGC 1 cut(s) 857
BlsI GCNGC 1 cut(s) 858
Bme1390I CCNGG 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 124
BmgBI CACGTC 1 cut(s) 803
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 1 cut(s) 112
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 2 cut(s) 697, 843
BmtI GCTAGC 1 cut(s) 665
BpiI GAAGAC 1 cut(s) 805
BplI GAGNNNNNCTC 2 cut(s) 889, 921
BpmI CTGGAG 3 cut(s) 85, 831, 903
BsaI GGTCTC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 275
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse118I RCCGGY 2 cut(s) 322, 341
Bse1I ACTGG 1 cut(s) 948
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 275
BseGI GGATG 2 cut(s) 647, 821
BseLI CCNNNNNNNGG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 948
BsePI GCGCGC 1 cut(s) 349
BseRI GAGGAG 3 cut(s) 64, 67, 70
BseSI GKGCMC 2 cut(s) 36, 919
BseXI GCAGC 1 cut(s) 868
Bsh1236I CGCG 2 cut(s) 246, 351
BshFI GGCC 1 cut(s) 413
BsiSI CCGG 2 cut(s) 323, 342
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 3 cut(s) 234, 387, 603
BsmBI CGTCTC 1 cut(s) 387
BsmFI GGGAC 1 cut(s) 292
BsmI GAATGC 3 cut(s) 270, 813, 947
BsnI GGCC 1 cut(s) 413
Bso31I GGTCTC 1 cut(s) 234
Bsp1286I GDGCHC 2 cut(s) 36, 919
Bsp143I GATC 1 cut(s) 151
BspACI CCGC 4 cut(s) 108, 133, 244, 310
BspANI GGCC 1 cut(s) 413
BspFNI CGCG 2 cut(s) 246, 351
BspLI GGNNCC 1 cut(s) 112
BspOI GCTAGC 1 cut(s) 665
BspTNI GGTCTC 1 cut(s) 234
BsrBI CCGCTC 1 cut(s) 310
BsrFI RCCGGY 2 cut(s) 322, 341
BsrI ACTGG 1 cut(s) 948
BssAI RCCGGY 2 cut(s) 322, 341
BssECI CCNNGG 1 cut(s) 275
BssHII GCGCGC 1 cut(s) 349
BssMI GATC 1 cut(s) 151
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 4 cut(s) 202, 283, 489, 547
Bst6I CTCTTC 2 cut(s) 161, 739
BstC8I GCNNGC 4 cut(s) 133, 347, 351, 663
BstDEI CTNAG 4 cut(s) 37, 594, 713, 836
BstENI CCTNNNNNAGG 1 cut(s) 119
BstF5I GGATG 2 cut(s) 647, 821
BstFNI CGCG 2 cut(s) 246, 351
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 3 cut(s) 208, 351, 353
BstKTI GATC 1 cut(s) 154
BstMAI GTCTC 3 cut(s) 234, 387, 603
BstMBI GATC 1 cut(s) 151
BstMWI GCNNNNNNNGC 2 cut(s) 252, 292
BstNI CCWGG 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 274
BstSFI CTRYAG 1 cut(s) 546
BstSLI GKGCMC 2 cut(s) 36, 919
BstUI CGCG 2 cut(s) 246, 351
BstV1I GCAGC 1 cut(s) 868
BstV2I GAAGAC 1 cut(s) 805
BsuRI GGCC 1 cut(s) 413
BtrI CACGTC 1 cut(s) 803
BtsCI GGATG 2 cut(s) 647, 821
BtsIMutI CAGTG 1 cut(s) 741
Cac8I GCNNGC 4 cut(s) 133, 347, 351, 663
CfoI GCGC 3 cut(s) 208, 351, 353
Cfr10I RCCGGY 2 cut(s) 322, 341
Cfr13I GGNCC 1 cut(s) 124
CseI GACGC 1 cut(s) 456
CviAII CATG 3 cut(s) 626, 719, 888
DdeI CTNAG 4 cut(s) 37, 594, 713, 836
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
DraI TTTAAA 1 cut(s) 823
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
Eam1104I CTCTTC 2 cut(s) 161, 739
EarI CTCTTC 2 cut(s) 161, 739
Eco147I AGGCCT 1 cut(s) 413
Eco31I GGTCTC 1 cut(s) 234
Eco32I GATATC 2 cut(s) 187, 754
Eco47I GGWCC 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 365
EcoNI CCTNNNNNAGG 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 274
EcoRV GATATC 2 cut(s) 187, 754
Esp3I CGTCTC 1 cut(s) 387
FaeI CATG 3 cut(s) 629, 722, 891
FaiI YATR 8 cut(s) 222, 627, 639, 667, 693, 720, 889, 936
FalI AAGNNNNNCTT 2 cut(s) 706, 738
FaqI GGGAC 1 cut(s) 292
FatI CATG 3 cut(s) 625, 718, 887
FauI CCCGC 1 cut(s) 140
Fnu4HI GCNGC 1 cut(s) 857
FokI GGATG 2 cut(s) 654, 828
Fsp4HI GCNGC 1 cut(s) 857
FspBI CTAG 1 cut(s) 662
GlaI GCGC 3 cut(s) 207, 350, 352
GluI GCNGC 1 cut(s) 857
GsuI CTGGAG 3 cut(s) 85, 831, 903
HaeII RGCGCY 1 cut(s) 209
HaeIII GGCC 1 cut(s) 413
HapII CCGG 2 cut(s) 323, 342
HgaI GACGC 1 cut(s) 456
HhaI GCGC 3 cut(s) 208, 351, 353
Hin1II CATG 3 cut(s) 629, 722, 891
Hin6I GCGC 3 cut(s) 206, 349, 351
HinP1I GCGC 3 cut(s) 206, 349, 351
HinfI GANTC 2 cut(s) 22, 646
HpaII CCGG 2 cut(s) 323, 342
HphI GGTGA 2 cut(s) 160, 322
Hpy166II GTNNAC 2 cut(s) 426, 485
Hpy188I TCNGA 8 cut(s) 121, 151, 213, 232, 384, 620, 727, 815
Hpy188III TCNNGA 5 cut(s) 102, 602, 764, 848, 882
Hpy8I GTNNAC 2 cut(s) 426, 485
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 4 cut(s) 389, 403, 599, 734
HpyCH4III ACNGT 4 cut(s) 202, 283, 489, 547
HpyCH4IV ACGT 1 cut(s) 802
HpyCH4V TGCA 1 cut(s) 856
HpyF10VI GCNNNNNNNGC 2 cut(s) 252, 292
HpyF3I CTNAG 4 cut(s) 37, 594, 713, 836
HpySE526I ACGT 1 cut(s) 802
Hsp92II CATG 3 cut(s) 629, 722, 891
HspAI GCGC 3 cut(s) 206, 349, 351
Kzo9I GATC 1 cut(s) 151
LmnI GCTCC 1 cut(s) 884
Lsp1109I GCAGC 1 cut(s) 868
LweI GCATC 2 cut(s) 697, 843
MaeI CTAG 1 cut(s) 662
MaeII ACGT 1 cut(s) 802
MaeIII GTNAC 4 cut(s) 328, 374, 839, 865
MalI GATC 1 cut(s) 153
MbiI CCGCTC 1 cut(s) 310
MboI GATC 1 cut(s) 151
MboII GAAGA 6 cut(s) 52, 55, 148, 418, 756, 810
MhlI GDGCHC 2 cut(s) 36, 919
MluCI AATT 3 cut(s) 13, 298, 358
MmeI TCCRAC 1 cut(s) 544
MroXI GAANNNNTTC 1 cut(s) 109
MseI TTAA 5 cut(s) 12, 357, 441, 519, 822
MspI CCGG 2 cut(s) 323, 342
MspR9I CCNGG 1 cut(s) 276
MssI GTTTAAAC 1 cut(s) 823
Mva1269I GAATGC 3 cut(s) 270, 813, 947
MvaI CCWGG 1 cut(s) 276
MvnI CGCG 2 cut(s) 246, 351
MwoI GCNNNNNNNGC 2 cut(s) 252, 292
NdeII GATC 1 cut(s) 151
NheI GCTAGC 1 cut(s) 661
NlaIII CATG 3 cut(s) 629, 722, 891
NlaIV GGNNCC 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 328
PauI GCGCGC 1 cut(s) 349
PceI AGGCCT 1 cut(s) 413
PctI GAATGC 3 cut(s) 270, 813, 947
PdmI GAANNNNTTC 1 cut(s) 109
PfeI GAWTC 2 cut(s) 22, 646
PkrI GCNGC 1 cut(s) 858
PmeI GTTTAAAC 1 cut(s) 823
PpuMI RGGWCCY 1 cut(s) 124
Psp5II RGGWCCY 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 1 cut(s) 124
PspPPI RGGWCCY 1 cut(s) 124
PteI GCGCGC 1 cut(s) 349
SaqAI TTAA 5 cut(s) 12, 357, 441, 519, 822
SatI GCNGC 1 cut(s) 857
Sau3AI GATC 1 cut(s) 151
Sau96I GGNCC 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 276
SduI GDGCHC 2 cut(s) 36, 919
SfaNI GCATC 2 cut(s) 697, 843
SfcI CTRYAG 1 cut(s) 546
SinI GGWCC 1 cut(s) 124
Sse9I AATT 3 cut(s) 13, 298, 358
SseBI AGGCCT 1 cut(s) 413
SsiI CCGC 4 cut(s) 108, 133, 244, 310
SspMI CTAG 1 cut(s) 662
StuI AGGCCT 1 cut(s) 413
StyD4I CCNGG 1 cut(s) 274
TaaI ACNGT 4 cut(s) 202, 283, 489, 547
TaiI ACGT 1 cut(s) 805
TaqI TCGA 3 cut(s) 183, 303, 603
TasI AATT 3 cut(s) 13, 298, 358
TfiI GAWTC 2 cut(s) 22, 646
Tru1I TTAA 5 cut(s) 12, 357, 441, 519, 822
Tru9I TTAA 5 cut(s) 12, 357, 441, 519, 822
TscAI CASTG 1 cut(s) 741
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 1 cut(s) 856
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 3 cut(s) 154, 305, 913
TspRI CASTG 1 cut(s) 741
VpaK11BI GGWCC 1 cut(s) 124
XagI CCTNNNNNAGG 1 cut(s) 119
XapI RAATTY 1 cut(s) 298
XmnI GAANNNNTTC 1 cut(s) 109
XspI CTAG 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.