Rh2AG339600

Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic mitochondrial-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
49374201 .. 49382821
8621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG339600.1

Sequence Viewer

Length: 456 bp
ATGCATGATGTGGATGTGATGGATTATTTACAGTCCTATGGTGGTGGTTTGGATTTTGGAGATGAAGAAGCAGCTGAAAGTGAAAGAGGTAGTGATGATGAAGCAACAAGTGAGGATGGGGACTATGATCCTGAATTCGATGATGATGAATATGACCATTATGGAACTGATGAGGATGACTGGTTGGCGGAAGGTGAGATGGTAAAAGAGATGGAAGAGGGTAGAAGAAAAAATGGTTTGAAGGCTGGAAACAGTAGTAGGGTTGCTATGAGTGTCGATGATATTGTCACTTTTGGAGCCAAGCCATTATTTTTCCTTGATTACTTTGCTACAAGCCGCCTTGATGTTGATCTTGCTGAAAAGGAGTTCTGTAGATTCATGAAAGAACATGGATGGTTGGATGGAAAGGTTGACGCTTTGAAGTATCTTGTTTCACACTTCCAACTTTACTGGTAG

Protein Analysis

151

Amino Acids

17.3

Weight (kDa)

4.11

Isoelectric Point (pI)

36.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 188, 337
AclWI GGATC 1 cut(s) 122
AcsI RAATTY 1 cut(s) 134
AgsI TTSAA 2 cut(s) 241, 421
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
AlwI GGATC 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 206
BbvI GCAGC 1 cut(s) 83
BccI CCATC 6 cut(s) 13, 110, 193, 205, 387, 395
BfmI CTRYAG 1 cut(s) 370
BisI GCNGC 2 cut(s) 72, 337
BlsI GCNGC 2 cut(s) 73, 338
BmiI GGNNCC 1 cut(s) 298
BsaBI GATNNNNATC 1 cut(s) 348
Bse1I ACTGG 2 cut(s) 185, 455
Bse8I GATNNNNATC 1 cut(s) 348
BseGI GGATG 5 cut(s) 19, 121, 181, 398, 406
BseJI GATNNNNATC 1 cut(s) 348
BseNI ACTGG 2 cut(s) 185, 455
BseXI GCAGC 1 cut(s) 83
BslFI GGGAC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 134
Bsp143I GATC 2 cut(s) 127, 349
BspACI CCGC 2 cut(s) 188, 337
BspHI TCATGA 1 cut(s) 378
BspLI GGNNCC 1 cut(s) 298
BspPI GGATC 1 cut(s) 122
BsrI ACTGG 2 cut(s) 185, 455
BssMI GATC 2 cut(s) 127, 349
Bst4CI ACNGT 2 cut(s) 33, 254
Bst6I CTCTTC 1 cut(s) 210
BstF5I GGATG 5 cut(s) 19, 121, 181, 398, 406
BstKTI GATC 2 cut(s) 130, 352
BstMBI GATC 2 cut(s) 127, 349
BstSFI CTRYAG 1 cut(s) 370
BstV1I GCAGC 1 cut(s) 83
BtsCI GGATG 5 cut(s) 19, 121, 181, 398, 406
CciI TCATGA 1 cut(s) 378
CseI GACGC 1 cut(s) 422
CviAII CATG 3 cut(s) 5, 379, 389
CviJI RGCY 5 cut(s) 74, 245, 299, 304, 336
CviKI_1 RGCY 5 cut(s) 74, 245, 299, 304, 336
DpnI GATC 2 cut(s) 129, 351
DpnII GATC 2 cut(s) 127, 349
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
EciI GGCGGA 1 cut(s) 203
EcoRI GAATTC 1 cut(s) 134
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 8, 382, 392
FaiI YATR 8 cut(s) 6, 39, 126, 153, 162, 269, 380, 390
FaqI GGGAC 1 cut(s) 134
FatI CATG 3 cut(s) 4, 378, 388
Fnu4HI GCNGC 2 cut(s) 72, 337
FokI GGATG 5 cut(s) 26, 128, 188, 405, 413
Fsp4HI GCNGC 2 cut(s) 72, 337
GluI GCNGC 2 cut(s) 72, 337
HgaI GACGC 1 cut(s) 422
Hin1II CATG 3 cut(s) 8, 382, 392
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HinfI GANTC 1 cut(s) 375
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 412
Hpy188III TCNNGA 2 cut(s) 131, 379
Hpy8I GTNNAC 1 cut(s) 412
HpyAV CCTTC 2 cut(s) 185, 235
HpyCH4III ACNGT 2 cut(s) 33, 254
HpyCH4V TGCA 1 cut(s) 4
Hsp92II CATG 3 cut(s) 8, 382, 392
Kzo9I GATC 2 cut(s) 127, 349
LmnI GCTCC 1 cut(s) 296
LpnPI CCDG 4 cut(s) 144, 166, 231, 436
Lsp1109I GCAGC 1 cut(s) 83
MaeIII GTNAC 1 cut(s) 286
MalI GATC 2 cut(s) 129, 351
MboI GATC 2 cut(s) 127, 349
MboII GAAGA 3 cut(s) 77, 227, 237
MluCI AATT 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 4 cut(s) 80, 106, 166, 211
Mph1103I ATGCAT 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 74
NdeII GATC 2 cut(s) 127, 349
NlaIII CATG 3 cut(s) 8, 382, 392
NlaIV GGNNCC 1 cut(s) 298
NmuCI GTSAC 1 cut(s) 286
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 378
PfeI GAWTC 1 cut(s) 375
PkrI GCNGC 2 cut(s) 73, 338
PspN4I GGNNCC 1 cut(s) 298
PvuII CAGCTG 1 cut(s) 74
SatI GCNGC 2 cut(s) 72, 337
Sau3AI GATC 2 cut(s) 127, 349
SetI ASST 4 cut(s) 76, 91, 196, 411
SfcI CTRYAG 1 cut(s) 370
Sse9I AATT 1 cut(s) 134
SsiI CCGC 2 cut(s) 188, 337
TaaI ACNGT 2 cut(s) 33, 254
TaqI TCGA 2 cut(s) 138, 276
TasI AATT 1 cut(s) 134
TauI GCSGC 1 cut(s) 339
TfiI GAWTC 1 cut(s) 375
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 5 cut(s) 78, 114, 162, 367, 395
XapI RAATTY 1 cut(s) 134
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.