Rh1CG264000

WPP domain-interacting tail-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000372
Physical Location & Seq
Forward (+)
52825605 .. 52829018
3414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG264000.1

Sequence Viewer

Length: 387 bp
ATGTCAGTTAGTGAATCCAGCGCTCAAGAGTTGGAGAGTTCCATGAAAGTTTTGACAAAAGTGGACTTGGACTTGGCATATTCTGCTGAGAAGTTGGCAAATCTACAGGAGCTTATGATGCGCCTATTCTCTCAAGAAAATGATCTTGAAGCAATGGCCACCGCAAATAACTATATCATGAGAAACTATTGTGATTCAGATTTTTCTAGATTTTGTTTTAAAAAGTTTGTCATTTCACTATCTATAAGGCCAATGTTGTGGTATATGGTTTTGACTGAAAATCTAGCAGTCTTTTTCCTACTTGTTCTGGTTTTTGTATGTATATTTGTTAAATCAGAGGAGTATAGTTATGATTTTCGCAATCAAGCCTTCTTTGATTTGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0008360 GO:0022603 GO:0022604 GO:0032878 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0065007 GO:0065008 GO:2000769
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

15.03

Weight (kDa)

4.69

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WIT1_2_N PF26581 11 - 62 8.2e-16 WIT1/2, N-terminal helical bundle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 162
AcoI YGGCCR 1 cut(s) 156
AfeI AGCGCT 1 cut(s) 22
AgsI TTSAA 1 cut(s) 149
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Aor51HI AGCGCT 1 cut(s) 22
AoxI GGCC 2 cut(s) 156, 248
AspLEI GCGC 2 cut(s) 23, 123
BalI TGGCCA 1 cut(s) 158
BfaI CTAG 2 cut(s) 207, 284
BfmI CTRYAG 1 cut(s) 104
BfoI RGCGCY 1 cut(s) 24
BmsI GCATC 1 cut(s) 108
BpuEI CTTGAG 2 cut(s) 9, 117
Bse3DI GCAATG 1 cut(s) 159
BseMI GCAATG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 353
BshFI GGCC 2 cut(s) 158, 250
BsnI GGCC 2 cut(s) 158, 250
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 1 cut(s) 162
BspANI GGCC 2 cut(s) 158, 250
BspCNI CTCAG 1 cut(s) 79
BspHI TCATGA 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 159
BssMI GATC 1 cut(s) 142
BstAPI GCANNNNNTGC 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 87
BstH2I RGCGCY 1 cut(s) 24
BstHHI GCGC 2 cut(s) 23, 123
BstKTI GATC 1 cut(s) 145
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 2 cut(s) 83, 118
BstSFI CTRYAG 1 cut(s) 104
BstXI CCANNNNNNTGG 1 cut(s) 258
BsuRI GGCC 2 cut(s) 158, 250
CciI TCATGA 1 cut(s) 177
CfoI GCGC 2 cut(s) 23, 123
CviAII CATG 2 cut(s) 43, 178
CviJI RGCY 4 cut(s) 112, 158, 250, 368
CviKI_1 RGCY 4 cut(s) 112, 158, 250, 368
DdeI CTNAG 1 cut(s) 87
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
DraI TTTAAA 1 cut(s) 220
EaeI YGGCCR 1 cut(s) 156
Eco47III AGCGCT 1 cut(s) 22
FaeI CATG 2 cut(s) 46, 181
FatI CATG 2 cut(s) 42, 177
FspBI CTAG 2 cut(s) 207, 284
GlaI GCGC 2 cut(s) 22, 122
HaeII RGCGCY 1 cut(s) 24
HaeIII GGCC 2 cut(s) 158, 250
HhaI GCGC 2 cut(s) 23, 123
Hin1II CATG 2 cut(s) 46, 181
Hin6I GCGC 2 cut(s) 21, 121
HinP1I GCGC 2 cut(s) 21, 121
HinfI GANTC 2 cut(s) 14, 194
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 2 cut(s) 199, 337
Hpy188III TCNNGA 5 cut(s) 26, 134, 146, 178, 207
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 1 cut(s) 379
HpyCH4V TGCA 1 cut(s) 382
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 118
HpyF3I CTNAG 1 cut(s) 87
Hsp92II CATG 2 cut(s) 46, 181
HspAI GCGC 2 cut(s) 21, 121
Kzo9I GATC 1 cut(s) 142
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 3 cut(s) 31, 92, 293
LweI GCATC 1 cut(s) 108
MaeI CTAG 2 cut(s) 207, 284
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MlsI TGGCCA 1 cut(s) 158
MluNI TGGCCA 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 1 cut(s) 331
Mox20I TGGCCA 1 cut(s) 158
MscI TGGCCA 1 cut(s) 158
MseI TTAA 3 cut(s) 219, 330, 385
Msp20I TGGCCA 1 cut(s) 158
MwoI GCNNNNNNNGC 2 cut(s) 83, 118
NdeII GATC 1 cut(s) 142
NlaIII CATG 2 cut(s) 46, 181
PagI TCATGA 1 cut(s) 177
PfeI GAWTC 2 cut(s) 14, 194
SaqAI TTAA 3 cut(s) 219, 330, 385
Sau3AI GATC 1 cut(s) 142
SetI ASST 1 cut(s) 114
SfaNI GCATC 1 cut(s) 108
SfcI CTRYAG 1 cut(s) 104
SmlI CTYRAG 2 cut(s) 24, 132
SmoI CTYRAG 2 cut(s) 24, 132
SsiI CCGC 1 cut(s) 162
SspMI CTAG 2 cut(s) 207, 284
TfiI GAWTC 2 cut(s) 14, 194
Tru1I TTAA 3 cut(s) 219, 330, 385
Tru9I TTAA 3 cut(s) 219, 330, 385
TspDTI ATGAA 1 cut(s) 59
XbaI TCTAGA 1 cut(s) 206
XspI CTAG 2 cut(s) 207, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.