Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000372

Physical Location & Seq

Genomic Coordinates Forward (+)

31440253 .. 31442265

Gene Structure 2013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19168

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGGTGATCAACAAAGGAATCCCTATGACCAGAGTTGCTATGAGTGTCGATGATATTGTTACTTCTGGAGCCAAGTCATTATTTTTCCTTGATTACTTTGCTACAAGCCGCCTTGATGTTGATCTTGCTAAAAAGGTAGAGGTCACGTATTGTGTACGTCAGCTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

56

Amino Acids

6.27

Weight (kDa)

7.88

Isoelectric Point (pI)

9.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000372)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g09000
rosa_chinensis	RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata	RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora	Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa	Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha	Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana	Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	109
AfaI	GTAC	1 cut(s)	156
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	16
BarI	GAAGNNNNNNTAC	1 cut(s)	147
BclI	TGATCA	1 cut(s)	6
BisI	GCNGC	1 cut(s)	109
BlsI	GCNGC	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	70
BpmI	CTGGAG	1 cut(s)	87
BsaAI	YACGTR	1 cut(s)	147
BsaBI	GATNNNNATC	1 cut(s)	120
Bse8I	GATNNNNATC	1 cut(s)	120
BseJI	GATNNNNATC	1 cut(s)	120
Bsp143I	GATC	2 cut(s)	6, 121
BspACI	CCGC	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	70
BssMI	GATC	2 cut(s)	6, 121
BstBAI	YACGTR	1 cut(s)	147
BstKTI	GATC	2 cut(s)	9, 124
BstMBI	GATC	2 cut(s)	6, 121
Csp6I	GTAC	1 cut(s)	155
CviJI	RGCY	3 cut(s)	71, 108, 163
CviKI_1	RGCY	3 cut(s)	71, 108, 163
CviQI	GTAC	1 cut(s)	155
DpnI	GATC	2 cut(s)	8, 123
DpnII	GATC	2 cut(s)	6, 121
FaiI	YATR	3 cut(s)	26, 41, 169
FbaI	TGATCA	1 cut(s)	6
Fnu4HI	GCNGC	1 cut(s)	109
Fsp4HI	GCNGC	1 cut(s)	109
GluI	GCNGC	1 cut(s)	109
GsuI	CTGGAG	1 cut(s)	87
HinfI	GANTC	1 cut(s)	18
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	155
Hpy188III	TCNNGA	1 cut(s)	66
Hpy8I	GTNNAC	1 cut(s)	155
HpyCH4IV	ACGT	2 cut(s)	146, 157
HpySE526I	ACGT	2 cut(s)	146, 157
Ksp22I	TGATCA	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	6, 121
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	2 cut(s)	43, 51
MaeII	ACGT	2 cut(s)	146, 157
MaeIII	GTNAC	2 cut(s)	58, 142
MalI	GATC	2 cut(s)	8, 123
MboI	GATC	2 cut(s)	6, 121
MnlI	CCTC	1 cut(s)	133
NdeII	GATC	2 cut(s)	6, 121
NlaIV	GGNNCC	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	18
PkrI	GCNGC	1 cut(s)	110
Ppu21I	YACGTR	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	70
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
SatI	GCNGC	1 cut(s)	109
Sau3AI	GATC	2 cut(s)	6, 121
SetI	ASST	5 cut(s)	138, 144, 149, 160, 165
SgeI	CNNG	8 cut(s)	42, 78, 85, 101, 117, 125, 137, 157
SsiI	CCGC	1 cut(s)	109
TaiI	ACGT	2 cut(s)	149, 160
TaqI	TCGA	1 cut(s)	48
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.