Rh4DG155900

CMP-sialic acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000372
Physical Location & Seq
Forward (+)
31226096 .. 31229415
3320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG155900.1

Sequence Viewer

Length: 720 bp
ATGAGCCACGCCAAGAGAAGCGTTCCCGGGACTGTACCGATGAAGCAGAATTTCGACGAGCGGAAACCCTCGCCGGTTGTCACCACCTCCACCGGCAAGCGCGCTCTTAATTACAATCAGGTTAGTTACCTTCAGAATGACAGAGATGATAGCTTGAAGAAGGCTTACAAAGAGTGGACTTTGACTAAGATCATTTTTATTGCTATCTGTACTTATTTGATATTGAGCTGTTCTTCTGAGTTTCGAGGAAGGTCCTCTCTGTGTCAATGGGCTTCCCAGATTAAGAAGCACTCGTCATACTTGATGACTGTAGAGATGTCTATTGTTGGAAGTTTTTGCTTGTTGGTTAGCACCACTAAGTCTCTCGAAGGAGAAGCTATCAGAAAACATGGGCTTTTCTATGGATGGATTCTACTGACTTGGATAGCATATCTGCCTGATAAAAAACGGGAATATGTGATTGATGATGATGCTCTAAGTCATGCTTCCGAGCTTTCAGTGGAAGGAAGAGATGATATCACTAATCTTGATGAGTTGGTCAAGGATTACAAAAGAAACAGAAGACGTGGAATGCTCGGATGGTTTAAACTGAAAGGTCTGAGTTACTCTCCAGAGATGCAGCAAAAAGTAACTAAAACATTTTCTGGAGCATGGAGAATGAGAGTAGCTCTTGCCTGTGCCCTTTTCATTTCACAATATAATGGACTGGCATTCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005338 GO:0005342 GO:0005463 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009555 GO:0009653 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010208 GO:0010584 GO:0010605 GO:0010927 GO:0012505 GO:0015075 GO:0015136 GO:0015165 GO:0015318 GO:0015711 GO:0015739 GO:0015780 GO:0015789 GO:0015849 GO:0015931 GO:0015932 GO:0016043 GO:0019222 GO:0022607 GO:0022857 GO:0030162 GO:0030198 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032434 GO:0032435 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0042176 GO:0042177 GO:0043062 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045861 GO:0046942 GO:0046943 GO:0048229 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051341 GO:0051354 GO:0055085 GO:0060255 GO:0061136 GO:0065007 GO:0065009 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0085029 GO:0090481 GO:0098656 GO:1901264 GO:1901505 GO:1901799 GO:1902183 GO:1903050 GO:1903051 GO:1903069 GO:1903070 GO:1903362 GO:1903363 GO:1903573 GO:1903825 GO:1903856 GO:1903857 GO:1904292 GO:1904293 GO:1905039 GO:1905897 GO:1990569 GO:2000058 GO:2000059
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nuc_sug_transp

Protein Analysis

239

Amino Acids

27.38

Weight (kDa)

9.48

Isoelectric Point (pI)

40.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 61
AccII CGCG 1 cut(s) 102
AciI CCGC 1 cut(s) 61
AcsI RAATTY 1 cut(s) 49
AcuI CTGAAG 1 cut(s) 116
AfaI GTAC 2 cut(s) 36, 211
AgsI TTSAA 1 cut(s) 157
AjiI CACGTC 1 cut(s) 566
AluBI AGCT 5 cut(s) 153, 228, 377, 493, 668
AluI AGCT 5 cut(s) 153, 228, 377, 493, 668
Alw26I GTCTC 1 cut(s) 366
Ama87I CYCGRG 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 619
ApoI RAATTY 1 cut(s) 49
AspLEI GCGC 2 cut(s) 102, 104
AspS9I GGNCC 1 cut(s) 252
AsuC2I CCSGG 2 cut(s) 27, 28
AsuHPI GGTGA 1 cut(s) 73
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 1 cut(s) 252
BaeGI GKGCMC 1 cut(s) 682
BarI GAAGNNNNNNTAC 2 cut(s) 149, 181
BbsI GAAGAC 1 cut(s) 568
BbvI GCAGC 1 cut(s) 631
BccI CCATC 2 cut(s) 399, 573
BcnI CCSGG 2 cut(s) 27, 28
BcoDI GTCTC 1 cut(s) 366
BfmI CTRYAG 1 cut(s) 309
BisI GCNGC 1 cut(s) 620
BlsI GCNGC 1 cut(s) 621
Bme1390I CCNGG 2 cut(s) 27, 28
Bme18I GGWCC 1 cut(s) 252
BmeT110I CYCGRG 1 cut(s) 26
BmgBI CACGTC 1 cut(s) 566
BmgT120I GGNCC 1 cut(s) 252
BmrFI CCNGG 2 cut(s) 27, 28
BmsI GCATC 2 cut(s) 460, 606
BpiI GAAGAC 1 cut(s) 568
BplI GAGNNNNNCTC 4 cut(s) 592, 624, 652, 684
BpmI CTGGAG 2 cut(s) 594, 666
BpuMI CCSGG 2 cut(s) 27, 28
BsaJI CCNNGG 1 cut(s) 26
Bse118I RCCGGY 2 cut(s) 73, 92
Bse1I ACTGG 1 cut(s) 711
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 2 cut(s) 410, 584
BseMII CTCAG 2 cut(s) 228, 590
BseNI ACTGG 1 cut(s) 711
BsePI GCGCGC 1 cut(s) 100
BseSI GKGCMC 1 cut(s) 682
BseXI GCAGC 1 cut(s) 631
Bsh1236I CGCG 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 3 cut(s) 27, 74, 93
BslFI GGGAC 1 cut(s) 43
BsmAI GTCTC 1 cut(s) 366
BsmFI GGGAC 1 cut(s) 43
BsmI GAATGC 2 cut(s) 576, 710
BsoBI CYCGRG 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 682
Bsp143I GATC 1 cut(s) 189
BspACI CCGC 1 cut(s) 61
BspCNI CTCAG 2 cut(s) 229, 591
BspFNI CGCG 1 cut(s) 102
BsrBI CCGCTC 1 cut(s) 61
BsrFI RCCGGY 2 cut(s) 73, 92
BsrI ACTGG 1 cut(s) 711
BssAI RCCGGY 2 cut(s) 73, 92
BssECI CCNNGG 1 cut(s) 26
BssHII GCGCGC 1 cut(s) 100
BssMI GATC 1 cut(s) 189
Bst4CI ACNGT 2 cut(s) 34, 310
Bst6I CTCTTC 1 cut(s) 502
BstC8I GCNNGC 2 cut(s) 98, 102
BstDEI CTNAG 5 cut(s) 186, 237, 357, 476, 599
BstF5I GGATG 2 cut(s) 410, 584
BstFNI CGCG 1 cut(s) 102
BstHHI GCGC 2 cut(s) 102, 104
BstKTI GATC 1 cut(s) 192
BstMAI GTCTC 1 cut(s) 366
BstMBI GATC 1 cut(s) 189
BstSCI CCNGG 2 cut(s) 25, 26
BstSFI CTRYAG 1 cut(s) 309
BstSLI GKGCMC 1 cut(s) 682
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 631
BstV2I GAAGAC 1 cut(s) 568
BtrI CACGTC 1 cut(s) 566
BtsCI GGATG 2 cut(s) 410, 584
BtsIMutI CAGTG 1 cut(s) 504
Cac8I GCNNGC 2 cut(s) 98, 102
CfoI GCGC 2 cut(s) 102, 104
Cfr10I RCCGGY 2 cut(s) 73, 92
Cfr13I GGNCC 1 cut(s) 252
Cfr9I CCCGGG 1 cut(s) 26
Csp6I GTAC 2 cut(s) 35, 210
CviAII CATG 3 cut(s) 389, 482, 651
CviJI RGCY 9 cut(s) 6, 153, 164, 228, 272, 377, 394, 493, 668
CviKI_1 RGCY 9 cut(s) 6, 153, 164, 228, 272, 377, 394, 493, 668
CviQI GTAC 2 cut(s) 35, 210
DdeI CTNAG 5 cut(s) 186, 237, 357, 476, 599
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
DraI TTTAAA 1 cut(s) 586
Eam1104I CTCTTC 1 cut(s) 502
EarI CTCTTC 1 cut(s) 502
Eco32I GATATC 1 cut(s) 517
Eco47I GGWCC 1 cut(s) 252
Eco57I CTGAAG 1 cut(s) 116
Eco88I CYCGRG 1 cut(s) 26
EcoO109I RGGNCCY 1 cut(s) 252
EcoRV GATATC 1 cut(s) 517
FaeI CATG 3 cut(s) 392, 485, 654
FaiI YATR 8 cut(s) 298, 390, 402, 430, 456, 483, 652, 699
FalI AAGNNNNNCTT 2 cut(s) 469, 501
FaqI GGGAC 1 cut(s) 43
FatI CATG 3 cut(s) 388, 481, 650
Fnu4HI GCNGC 1 cut(s) 620
FokI GGATG 2 cut(s) 417, 591
Fsp4HI GCNGC 1 cut(s) 620
GlaI GCGC 2 cut(s) 101, 103
GluI GCNGC 1 cut(s) 620
GsuI CTGGAG 2 cut(s) 594, 666
HapII CCGG 3 cut(s) 27, 74, 93
HhaI GCGC 2 cut(s) 102, 104
Hin1II CATG 3 cut(s) 392, 485, 654
Hin6I GCGC 2 cut(s) 100, 102
HinP1I GCGC 2 cut(s) 100, 102
HinfI GANTC 1 cut(s) 409
HpaII CCGG 3 cut(s) 27, 74, 93
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 6 cut(s) 135, 238, 383, 490, 578, 600
Hpy188III TCNNGA 4 cut(s) 365, 527, 611, 645
Hpy8I GTNNAC 1 cut(s) 177
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 5 cut(s) 140, 154, 243, 362, 497
HpyCH4III ACNGT 2 cut(s) 34, 310
HpyCH4IV ACGT 1 cut(s) 565
HpyCH4V TGCA 1 cut(s) 619
HpyF3I CTNAG 5 cut(s) 186, 237, 357, 476, 599
HpySE526I ACGT 1 cut(s) 565
Hsp92II CATG 3 cut(s) 392, 485, 654
HspAI GCGC 2 cut(s) 100, 102
Kzo9I GATC 1 cut(s) 189
LmnI GCTCC 1 cut(s) 647
Lsp1109I GCAGC 1 cut(s) 631
LweI GCATC 2 cut(s) 460, 606
MaeII ACGT 1 cut(s) 565
MaeIII GTNAC 4 cut(s) 79, 125, 602, 628
MalI GATC 1 cut(s) 191
MbiI CCGCTC 1 cut(s) 61
MboI GATC 1 cut(s) 189
MboII GAAGA 4 cut(s) 169, 225, 519, 573
MhlI GDGCHC 1 cut(s) 682
MluCI AATT 2 cut(s) 49, 109
MmeI TCCRAC 1 cut(s) 307
MnlI CCTC 4 cut(s) 79, 97, 239, 265
MseI TTAA 3 cut(s) 108, 282, 585
MspI CCGG 3 cut(s) 27, 74, 93
MspR9I CCNGG 2 cut(s) 27, 28
MssI GTTTAAAC 1 cut(s) 586
Mva1269I GAATGC 2 cut(s) 576, 710
MvnI CGCG 1 cut(s) 102
NciI CCSGG 2 cut(s) 27, 28
NdeII GATC 1 cut(s) 189
NlaIII CATG 3 cut(s) 392, 485, 654
NmuCI GTSAC 1 cut(s) 79
PauI GCGCGC 1 cut(s) 100
PctI GAATGC 2 cut(s) 576, 710
PfeI GAWTC 1 cut(s) 409
PkrI GCNGC 1 cut(s) 621
PmeI GTTTAAAC 1 cut(s) 586
PpuMI RGGWCCY 1 cut(s) 252
Psp5II RGGWCCY 1 cut(s) 252
PspPI GGNCC 1 cut(s) 252
PspPPI RGGWCCY 1 cut(s) 252
PteI GCGCGC 1 cut(s) 100
RsaI GTAC 2 cut(s) 36, 211
RsaNI GTAC 2 cut(s) 35, 210
SaqAI TTAA 3 cut(s) 108, 282, 585
SatI GCNGC 1 cut(s) 620
Sau3AI GATC 1 cut(s) 189
Sau96I GGNCC 1 cut(s) 252
ScrFI CCNGG 2 cut(s) 27, 28
SduI GDGCHC 1 cut(s) 682
SfaNI GCATC 2 cut(s) 460, 606
SfcI CTRYAG 1 cut(s) 309
SinI GGWCC 1 cut(s) 252
SmaI CCCGGG 1 cut(s) 28
Sse9I AATT 2 cut(s) 49, 109
SsiI CCGC 1 cut(s) 61
StyD4I CCNGG 2 cut(s) 25, 26
TaaI ACNGT 2 cut(s) 34, 310
TaiI ACGT 1 cut(s) 568
TaqI TCGA 3 cut(s) 54, 244, 366
TasI AATT 2 cut(s) 49, 109
TatI WGTACW 1 cut(s) 209
TfiI GAWTC 1 cut(s) 409
Tru1I TTAA 3 cut(s) 108, 282, 585
Tru9I TTAA 3 cut(s) 108, 282, 585
TscAI CASTG 1 cut(s) 504
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 1 cut(s) 619
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 56, 676
TspMI CCCGGG 1 cut(s) 26
TspRI CASTG 1 cut(s) 504
VpaK11BI GGWCC 1 cut(s) 252
XapI RAATTY 1 cut(s) 49
XmaI CCCGGG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.