RLG00000033239

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000372
Physical Location & Seq
Reverse (-)
24746588 .. 24747064
477 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033239

Sequence Viewer

Length: 336 bp
ATGAAGACTACCTTAACACTTGTGGTGTTCGTTGCCTTTGTCTTGTTCAAATTTTACTTCAACAATAAAACCTGGGCTTACCTTGATGGTAAGGTCGAGAGGGAGAGCCCAGGAGATGGAGTTGTGCTTGGAGGCTCGTCGTCTCGCCCAGATCTTACCGACCTCGAGGAGCACCGATCTCAACTGCAGGGCGCGATCAATGAGCTTGATCTGATTGGTGTCGGAGTCACGGGAGTCGAGGATCCACTCGAAGGAGAGATCGATGGTGAAGGGCAGGGAGTCGGAGAAGTCGAGGAAGGTCTCAAGGAGTCACCGTCAAGGAGGTTGGGATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.08

Weight (kDa)

4.41

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 164
AccB7I CCANNNNNTGG 1 cut(s) 116
AccII CGCG 1 cut(s) 194
AclWI GGATC 2 cut(s) 236, 249
AcsI RAATTY 1 cut(s) 50
AfiI CCNNNNNNNGG 2 cut(s) 116, 251
AgsI TTSAA 2 cut(s) 49, 61
AjnI CCWGG 2 cut(s) 71, 109
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 2 cut(s) 147, 305
AlwI GGATC 2 cut(s) 236, 249
Ama87I CYCGRG 1 cut(s) 164
ApoI RAATTY 1 cut(s) 50
AspLEI GCGC 1 cut(s) 194
AsuHPI GGTGA 2 cut(s) 278, 303
AvaI CYCGRG 1 cut(s) 164
BamHI GGATCC 1 cut(s) 241
BanII GRGCYC 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 174
BccI CCATC 4 cut(s) 80, 110, 257, 324
BciT130I CCWGG 2 cut(s) 73, 111
BcoDI GTCTC 2 cut(s) 147, 305
BfmI CTRYAG 1 cut(s) 185
BglII AGATCT 1 cut(s) 151
Bme1390I CCNGG 2 cut(s) 73, 111
BmeT110I CYCGRG 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 2 cut(s) 73, 111
BpiI GAAGAC 1 cut(s) 11
BpuEI CTTGAG 1 cut(s) 287
Bsa29I ATCGAT 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 305
BsaJI CCNNGG 2 cut(s) 72, 109
BsaXI ACNNNNNCTCC 4 cut(s) 105, 135, 299, 329
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 251
BseBI CCWGG 2 cut(s) 73, 111
BseCI ATCGAT 1 cut(s) 261
BseDI CCNNGG 2 cut(s) 72, 109
BseGI GGATG 1 cut(s) 335
BseLI CCNNNNNNNGG 2 cut(s) 116, 251
BseRI GAGGAG 1 cut(s) 182
Bsh1236I CGCG 1 cut(s) 194
BshVI ATCGAT 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 164
BslI CCNNNNNNNGG 2 cut(s) 116, 251
BsmAI GTCTC 2 cut(s) 147, 305
BsmBI CGTCTC 1 cut(s) 147
Bso31I GGTCTC 1 cut(s) 305
BsoBI CYCGRG 1 cut(s) 164
Bsp1286I GDGCHC 2 cut(s) 110, 174
Bsp143I GATC 6 cut(s) 151, 176, 195, 208, 241, 258
BspDI ATCGAT 1 cut(s) 261
BspFNI CGCG 1 cut(s) 194
BspLI GGNNCC 1 cut(s) 243
BspMAI CTGCAG 1 cut(s) 189
BspPI GGATC 2 cut(s) 236, 249
BspTNI GGTCTC 1 cut(s) 305
BssECI CCNNGG 2 cut(s) 72, 109
BssMI GATC 6 cut(s) 151, 176, 195, 208, 241, 258
Bst2UI CCWGG 2 cut(s) 73, 111
Bst4CI ACNGT 1 cut(s) 315
BstF5I GGATG 1 cut(s) 335
BstFNI CGCG 1 cut(s) 194
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 6 cut(s) 154, 179, 198, 211, 244, 261
BstMAI GTCTC 2 cut(s) 147, 305
BstMBI GATC 6 cut(s) 151, 176, 195, 208, 241, 258
BstNI CCWGG 2 cut(s) 73, 111
BstSCI CCNGG 2 cut(s) 71, 109
BstSFI CTRYAG 1 cut(s) 185
BstUI CGCG 1 cut(s) 194
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 2 cut(s) 151, 241
BstYI RGATCY 2 cut(s) 151, 241
Bsu15I ATCGAT 1 cut(s) 261
BsuTUI ATCGAT 1 cut(s) 261
BtsCI GGATG 1 cut(s) 335
CfoI GCGC 1 cut(s) 194
ClaI ATCGAT 1 cut(s) 261
CviJI RGCY 4 cut(s) 77, 108, 135, 205
CviKI_1 RGCY 4 cut(s) 77, 108, 135, 205
DpnI GATC 6 cut(s) 153, 178, 197, 210, 243, 260
DpnII GATC 6 cut(s) 151, 176, 195, 208, 241, 258
Eco24I GRGCYC 1 cut(s) 110
Eco31I GGTCTC 1 cut(s) 305
Eco88I CYCGRG 1 cut(s) 164
EcoRII CCWGG 2 cut(s) 71, 109
EcoT38I GRGCYC 1 cut(s) 110
Esp3I CGTCTC 1 cut(s) 147
FalI AAGNNNNNCTT 1 cut(s) 28
FriOI GRGCYC 1 cut(s) 110
GlaI GCGC 1 cut(s) 193
HhaI GCGC 1 cut(s) 194
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HinfI GANTC 4 cut(s) 225, 234, 279, 308
HphI GGTGA 2 cut(s) 278, 303
Hpy188I TCNGA 3 cut(s) 213, 224, 284
Hpy188III TCNNGA 1 cut(s) 97
Hpy99I CGWCG 1 cut(s) 142
HpyAV CCTTC 3 cut(s) 245, 263, 290
HpyCH4III ACNGT 1 cut(s) 315
HpyCH4V TGCA 1 cut(s) 187
HspAI GCGC 1 cut(s) 192
Kzo9I GATC 6 cut(s) 151, 176, 195, 208, 241, 258
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 7 cut(s) 58, 85, 96, 123, 162, 173, 260
MaeIII GTNAC 2 cut(s) 226, 309
MalI GATC 6 cut(s) 153, 178, 197, 210, 243, 260
MboI GATC 6 cut(s) 151, 176, 195, 208, 241, 258
MboII GAAGA 1 cut(s) 16
MflI RGATCY 2 cut(s) 151, 241
MhlI GDGCHC 2 cut(s) 110, 174
MluCI AATT 1 cut(s) 50
MlyI GAGTC 4 cut(s) 234, 243, 288, 317
MmeI TCCRAC 2 cut(s) 202, 262
MnlI CCTC 7 cut(s) 93, 125, 160, 173, 232, 286, 315
MseI TTAA 1 cut(s) 14
MspR9I CCNGG 2 cut(s) 73, 111
MvaI CCWGG 2 cut(s) 73, 111
MvnI CGCG 1 cut(s) 194
NdeII GATC 6 cut(s) 151, 176, 195, 208, 241, 258
NlaIV GGNNCC 1 cut(s) 243
NmuCI GTSAC 2 cut(s) 226, 309
PaeR7I CTCGAG 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PflMI CCANNNNNTGG 1 cut(s) 116
PleI GAGTC 4 cut(s) 233, 242, 287, 316
PpsI GAGTC 4 cut(s) 233, 242, 287, 316
Psp6I CCWGG 2 cut(s) 71, 109
PspGI CCWGG 2 cut(s) 71, 109
PspN4I GGNNCC 1 cut(s) 243
PspXI VCTCGAGB 1 cut(s) 164
PstI CTGCAG 1 cut(s) 189
PsuI RGATCY 2 cut(s) 151, 241
SaqAI TTAA 1 cut(s) 14
Sau3AI GATC 6 cut(s) 151, 176, 195, 208, 241, 258
SchI GAGTC 4 cut(s) 234, 243, 288, 317
ScrFI CCNGG 2 cut(s) 73, 111
SduI GDGCHC 2 cut(s) 110, 174
SetI ASST 8 cut(s) 14, 74, 84, 96, 165, 207, 301, 326
SfcI CTRYAG 1 cut(s) 185
Sfr274I CTCGAG 1 cut(s) 164
SlaI CTCGAG 1 cut(s) 164
SmlI CTYRAG 2 cut(s) 164, 302
SmoI CTYRAG 2 cut(s) 164, 302
Sse9I AATT 1 cut(s) 50
StyD4I CCNGG 2 cut(s) 71, 109
TaaI ACNGT 1 cut(s) 315
TaqI TCGA 6 cut(s) 96, 165, 237, 249, 261, 291
TasI AATT 1 cut(s) 50
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TseFI GTSAC 2 cut(s) 226, 309
Tsp45I GTSAC 2 cut(s) 226, 309
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 116
XapI RAATTY 1 cut(s) 50
XhoI CTCGAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.