Rroxscaffold_7G00180190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000372
Physical Location & Seq
Forward (+)
19700730 .. 19705032
4303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00180190.1

Sequence Viewer

Length: 150 bp
ATGGACTCGGGGTTTGGGTCCGCTTCACCGGGTGATCTGCTAGTGCTTAGTGAAAGGAATAGTGCTAAATGGAAGGAATCTAACGTCTCCGGCGACAATGCCTTCGCCGTGATCTGCAACAAGTACGACCGATACGGCATCGACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

49

Amino Acids

5.31

Weight (kDa)

4.98

Isoelectric Point (pI)

34.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 21
AdeI CACNNNGTG 1 cut(s) 32
AfaI GTAC 1 cut(s) 125
Alw26I GTCTC 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 7
ArsI GACNNNNNNTTYG 3 cut(s) 28, 86, 118
AspS9I GGNCC 1 cut(s) 18
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 2 cut(s) 18, 44
AvaI CYCGRG 1 cut(s) 7
AvaII GGWCC 1 cut(s) 18
BceAI ACGGC 1 cut(s) 92
BcnI CCSGG 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 30
Bme18I GGWCC 1 cut(s) 18
BmeT110I CYCGRG 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 30
BpuMI CCSGG 1 cut(s) 30
Bsh1285I CGRYCG 1 cut(s) 130
BsiEI CGRYCG 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 7
BsiSI CCGG 2 cut(s) 29, 90
BsmAI GTCTC 1 cut(s) 91
BsmBI CGTCTC 1 cut(s) 91
BsoBI CYCGRG 1 cut(s) 7
Bsp143I GATC 2 cut(s) 34, 111
BspACI CCGC 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 19
BssMI GATC 2 cut(s) 34, 111
BstDEI CTNAG 1 cut(s) 47
BstKTI GATC 2 cut(s) 37, 114
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 2 cut(s) 34, 111
BstMCI CGRYCG 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 124
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 1 cut(s) 47
DpnI GATC 2 cut(s) 36, 113
DpnII GATC 2 cut(s) 34, 111
DraIII CACNNNGTG 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 18
Eco88I CYCGRG 1 cut(s) 7
Esp3I CGTCTC 1 cut(s) 91
FspBI CTAG 1 cut(s) 41
HapII CCGG 2 cut(s) 29, 90
HinfI GANTC 2 cut(s) 5, 77
HpaII CCGG 2 cut(s) 29, 90
HphI GGTGA 2 cut(s) 18, 44
HpyAV CCTTC 2 cut(s) 67, 112
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 117
HpyF3I CTNAG 1 cut(s) 47
HpySE526I ACGT 1 cut(s) 84
Kzo9I GATC 2 cut(s) 34, 111
LpnPI CCDG 2 cut(s) 42, 103
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 84
MalI GATC 2 cut(s) 36, 113
MboI GATC 2 cut(s) 34, 111
MspI CCGG 2 cut(s) 29, 90
MspR9I CCNGG 1 cut(s) 30
NciI CCSGG 1 cut(s) 30
NdeII GATC 2 cut(s) 34, 111
NlaIV GGNNCC 1 cut(s) 19
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PfeI GAWTC 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 1 cut(s) 18
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
Sau3AI GATC 2 cut(s) 34, 111
Sau96I GGNCC 1 cut(s) 18
ScrFI CCNGG 1 cut(s) 30
SetI ASST 1 cut(s) 87
SgeI CNNG 8 cut(s) 19, 21, 41, 42, 53, 102, 121, 133
SinI GGWCC 1 cut(s) 18
SsiI CCGC 1 cut(s) 21
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 28
TaiI ACGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 141
TaqII GACCGA 1 cut(s) 144
TfiI GAWTC 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 18
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.