Rw0G014360

CMP-sialic acid transporter

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00646
Physical Location & Seq
Forward (+)
7023 .. 9308
2286 bp
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UTR
Exon/CDS
Intron
Rw0G014360.1

Sequence Viewer

Length: 525 bp
ATATTGTTTAATGGGATTATTCCTGTGTTGGTTGCGTCTGTGCTTTCGGGTTTACAGTCCTCTCTGTGTCAATGGGCTTCCCAGATTAAGAAGCACTCGTCATACTTGATGACTGTAGAGATGTCTATTGTTGGAAGTTTTTGCTTGTTGGTTAGCACCACTAAGTCTCTCGAAGGAGAAGCTATCAGAAAACATGGGCTTTTCTATGGATGGATTCTACTGACTTGGCTAGCATATCTGCCTGATAAAAAACGGGAATATGTGATTGATGATGATGCTCTAAGTCATGCTTCCGAGCTTTCAGTGGAAGGAAGAGATGATATCACTAATCTTGATGAGTTGGTCAAGGATTACAAAAGAAACAGAAGACGTGGAATGCTCGGATGGTTTAAACTGAAAGGTCTGAGTTACTCTCCAGAGATGCAGCAAAAAGTAACTAAAACATTTTCTGGAGCATGGAGAATGAGAGTAGCTCTTGCCTGTGCCCTTTTCATTTCACAATATAATGGACTGGCATTCCTTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

174

Amino Acids

19.7

Weight (kDa)

9.13

Isoelectric Point (pI)

35.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AjiI CACGTC 1 cut(s) 371
AluBI AGCT 3 cut(s) 182, 298, 473
AluI AGCT 3 cut(s) 182, 298, 473
Alw26I GTCTC 1 cut(s) 171
ApeKI GCWGC 1 cut(s) 424
AsuNHI GCTAGC 1 cut(s) 229
BaeGI GKGCMC 1 cut(s) 487
BbsI GAAGAC 1 cut(s) 373
BbvI GCAGC 1 cut(s) 436
BccI CCATC 2 cut(s) 204, 378
BcoDI GTCTC 1 cut(s) 171
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 114
BisI GCNGC 1 cut(s) 425
BlsI GCNGC 1 cut(s) 426
BmgBI CACGTC 1 cut(s) 371
BmsI GCATC 2 cut(s) 265, 411
BmtI GCTAGC 1 cut(s) 233
BpiI GAAGAC 1 cut(s) 373
BplI GAGNNNNNCTC 4 cut(s) 397, 429, 457, 489
BpmI CTGGAG 2 cut(s) 399, 471
Bse1I ACTGG 1 cut(s) 516
BseGI GGATG 2 cut(s) 215, 389
BseMII CTCAG 1 cut(s) 395
BseNI ACTGG 1 cut(s) 516
BseSI GKGCMC 1 cut(s) 487
BseXI GCAGC 1 cut(s) 436
BsmAI GTCTC 1 cut(s) 171
BsmI GAATGC 2 cut(s) 381, 515
Bsp1286I GDGCHC 1 cut(s) 487
BspCNI CTCAG 1 cut(s) 396
BspOI GCTAGC 1 cut(s) 233
BsrI ACTGG 1 cut(s) 516
Bst4CI ACNGT 2 cut(s) 57, 115
Bst6I CTCTTC 1 cut(s) 307
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 3 cut(s) 162, 281, 404
BstF5I GGATG 2 cut(s) 215, 389
BstMAI GTCTC 1 cut(s) 171
BstSFI CTRYAG 1 cut(s) 114
BstSLI GKGCMC 1 cut(s) 487
BstV1I GCAGC 1 cut(s) 436
BstV2I GAAGAC 1 cut(s) 373
BtrI CACGTC 1 cut(s) 371
BtsCI GGATG 2 cut(s) 215, 389
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 231
CseI GACGC 1 cut(s) 24
CviAII CATG 3 cut(s) 194, 287, 456
CviJI RGCY 6 cut(s) 77, 182, 199, 229, 298, 473
CviKI_1 RGCY 6 cut(s) 77, 182, 199, 229, 298, 473
DdeI CTNAG 3 cut(s) 162, 281, 404
DraI TTTAAA 1 cut(s) 391
Eam1104I CTCTTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 307
Eco32I GATATC 1 cut(s) 322
EcoRV GATATC 1 cut(s) 322
FaeI CATG 3 cut(s) 197, 290, 459
FaiI YATR 8 cut(s) 103, 195, 207, 235, 261, 288, 457, 504
FalI AAGNNNNNCTT 2 cut(s) 274, 306
FatI CATG 3 cut(s) 193, 286, 455
Fnu4HI GCNGC 1 cut(s) 425
FokI GGATG 2 cut(s) 222, 396
Fsp4HI GCNGC 1 cut(s) 425
FspBI CTAG 1 cut(s) 230
GluI GCNGC 1 cut(s) 425
GsuI CTGGAG 2 cut(s) 399, 471
HgaI GACGC 1 cut(s) 24
Hin1II CATG 3 cut(s) 197, 290, 459
HinfI GANTC 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 53
Hpy188I TCNGA 4 cut(s) 188, 295, 383, 405
Hpy188III TCNNGA 4 cut(s) 170, 332, 416, 450
Hpy8I GTNNAC 1 cut(s) 53
HpyAV CCTTC 2 cut(s) 167, 302
HpyCH4III ACNGT 2 cut(s) 57, 115
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 1 cut(s) 424
HpyF3I CTNAG 3 cut(s) 162, 281, 404
HpySE526I ACGT 1 cut(s) 370
Hsp92II CATG 3 cut(s) 197, 290, 459
LmnI GCTCC 1 cut(s) 452
LpnPI CCDG 7 cut(s) 36, 95, 255, 429, 435, 493, 497
Lsp1109I GCAGC 1 cut(s) 436
LweI GCATC 2 cut(s) 265, 411
MaeI CTAG 1 cut(s) 230
MaeII ACGT 1 cut(s) 370
MaeIII GTNAC 2 cut(s) 407, 433
MboII GAAGA 2 cut(s) 324, 378
MhlI GDGCHC 1 cut(s) 487
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 1 cut(s) 70
MseI TTAA 3 cut(s) 9, 87, 390
MssI GTTTAAAC 1 cut(s) 391
Mva1269I GAATGC 2 cut(s) 381, 515
NheI GCTAGC 1 cut(s) 229
NlaIII CATG 3 cut(s) 197, 290, 459
PctI GAATGC 2 cut(s) 381, 515
PfeI GAWTC 1 cut(s) 214
PkrI GCNGC 1 cut(s) 426
PmeI GTTTAAAC 1 cut(s) 391
SaqAI TTAA 3 cut(s) 9, 87, 390
SatI GCNGC 1 cut(s) 425
SduI GDGCHC 1 cut(s) 487
SetI ASST 5 cut(s) 184, 300, 373, 403, 475
SfaNI GCATC 2 cut(s) 265, 411
SfcI CTRYAG 1 cut(s) 114
SspMI CTAG 1 cut(s) 230
TaaI ACNGT 2 cut(s) 57, 115
TaiI ACGT 1 cut(s) 373
TaqI TCGA 1 cut(s) 171
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 3 cut(s) 9, 87, 390
Tru9I TTAA 3 cut(s) 9, 87, 390
TscAI CASTG 1 cut(s) 309
TseI GCWGC 1 cut(s) 424
TspDTI ATGAA 1 cut(s) 481
TspRI CASTG 1 cut(s) 309
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.