Rh1DG031600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000372
Physical Location & Seq
Forward (+)
4624230 .. 4631464
7235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG031600.1

Sequence Viewer

Length: 393 bp
ATGGTTATTGAAATGGGTTGTAGTTCAAGTGGGGTAGTTGGGAGTGGTGTAGGCACTAGTGGTTCAAGGCTTAGCAGTGGTGTGCTAGATGAAGACTATGAGAAACATGAGGAGGGTGTGCAGGCTAGTGGTGTGCAAGGATTAGACTATGAGAAAGAGATAGACTTGATGGACTTTCTTCAAACATTCGGGGTTCACGGATTTGAGTTGAGTGAGGATGGGGAGACAAGTGATGATGATTTTTTGGTATGGCAGAGAAGGAGATCGATGGAGTACTGGGTTGAGTTGTTTAAAAAAGAGAAAACCCCTCATGATTTTTATAATTTGGATAATCATATGCATCGGTTTAAGCCTTTAAGGGAAGCAGTGCGAGCATCGGAGCCAAAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.84

Weight (kDa)

4.8

Isoelectric Point (pI)

46.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 321
AfaI GTAC 1 cut(s) 275
AgsI TTSAA 4 cut(s) 11, 27, 66, 182
AhlI ACTAGT 1 cut(s) 56
Alw26I GTCTC 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 99
BccI CCATC 3 cut(s) 163, 212, 262
BcoDI GTCTC 1 cut(s) 218
BcuI ACTAGT 1 cut(s) 56
BfaI CTAG 3 cut(s) 57, 86, 126
BlpI GCTNAGC 1 cut(s) 71
BmcAI AGTACT 1 cut(s) 275
BmiI GGNNCC 1 cut(s) 381
BmrI ACTGGG 1 cut(s) 286
BmsI GCATC 2 cut(s) 349, 383
BmuI ACTGGG 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 99
Bpu1102I GCTNAGC 1 cut(s) 71
Bsa29I ATCGAT 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 281
BseCI ATCGAT 1 cut(s) 266
BseGI GGATG 1 cut(s) 223
BseNI ACTGG 1 cut(s) 281
BseRI GAGGAG 1 cut(s) 125
BsgI GTGCAG 1 cut(s) 140
BshVI ATCGAT 1 cut(s) 266
BsmAI GTCTC 1 cut(s) 218
Bsp143I GATC 1 cut(s) 263
Bsp1720I GCTNAGC 1 cut(s) 71
BspDI ATCGAT 1 cut(s) 266
BspHI TCATGA 1 cut(s) 310
BspLI GGNNCC 1 cut(s) 381
BsrI ACTGG 1 cut(s) 281
BssMI GATC 1 cut(s) 263
BstC8I GCNNGC 2 cut(s) 123, 372
BstDEI CTNAG 1 cut(s) 71
BstF5I GGATG 1 cut(s) 223
BstKTI GATC 1 cut(s) 266
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 1 cut(s) 263
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstV2I GAAGAC 1 cut(s) 99
Bsu15I ATCGAT 1 cut(s) 266
BsuTUI ATCGAT 1 cut(s) 266
BtsCI GGATG 1 cut(s) 223
BtsI GCAGTG 2 cut(s) 82, 372
BtsIMutI CAGTG 2 cut(s) 82, 372
Cac8I GCNNGC 2 cut(s) 123, 372
CciI TCATGA 1 cut(s) 310
ClaI ATCGAT 1 cut(s) 266
Csp6I GTAC 1 cut(s) 274
CviAII CATG 2 cut(s) 107, 311
CviJI RGCY 4 cut(s) 70, 125, 352, 382
CviKI_1 RGCY 4 cut(s) 70, 125, 352, 382
CviQI GTAC 1 cut(s) 274
DdeI CTNAG 1 cut(s) 71
DpnI GATC 1 cut(s) 265
DpnII GATC 1 cut(s) 263
DraI TTTAAA 1 cut(s) 292
EcoT22I ATGCAT 1 cut(s) 342
FaeI CATG 2 cut(s) 110, 314
FaiI YATR 8 cut(s) 99, 108, 150, 250, 312, 321, 336, 338
FatI CATG 2 cut(s) 106, 310
FauNDI CATATG 1 cut(s) 336
FokI GGATG 1 cut(s) 230
FspBI CTAG 3 cut(s) 57, 86, 126
Hin1II CATG 2 cut(s) 110, 314
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 1 cut(s) 379
Hpy188III TCNNGA 1 cut(s) 311
Hpy8I GTNNAC 1 cut(s) 196
HpyAV CCTTC 1 cut(s) 252
HpyCH4V TGCA 3 cut(s) 121, 136, 340
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 1 cut(s) 71
Hsp92II CATG 2 cut(s) 110, 314
Kzo9I GATC 1 cut(s) 263
LmnI GCTCC 1 cut(s) 379
LpnPI CCDG 2 cut(s) 107, 262
LweI GCATC 2 cut(s) 349, 383
MaeI CTAG 3 cut(s) 57, 86, 126
MalI GATC 1 cut(s) 265
MboI GATC 1 cut(s) 263
MboII GAAGA 2 cut(s) 104, 170
MluCI AATT 1 cut(s) 322
MnlI CCTC 4 cut(s) 103, 106, 208, 318
Mph1103I ATGCAT 1 cut(s) 342
MseI TTAA 3 cut(s) 291, 348, 356
MwoI GCNNNNNNNGC 1 cut(s) 371
NdeI CATATG 1 cut(s) 336
NdeII GATC 1 cut(s) 263
NlaIII CATG 2 cut(s) 110, 314
NlaIV GGNNCC 1 cut(s) 381
NsiI ATGCAT 1 cut(s) 342
PagI TCATGA 1 cut(s) 310
PsiI TTATAA 1 cut(s) 321
PspN4I GGNNCC 1 cut(s) 381
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
SaqAI TTAA 3 cut(s) 291, 348, 356
Sau3AI GATC 1 cut(s) 263
ScaI AGTACT 1 cut(s) 275
SetI ASST 1 cut(s) 392
SfaNI GCATC 2 cut(s) 349, 383
SpeI ACTAGT 1 cut(s) 56
Sse9I AATT 1 cut(s) 322
SspMI CTAG 3 cut(s) 57, 86, 126
TaqI TCGA 1 cut(s) 266
TasI AATT 1 cut(s) 322
TatI WGTACW 1 cut(s) 273
Tru1I TTAA 3 cut(s) 291, 348, 356
Tru9I TTAA 3 cut(s) 291, 348, 356
TscAI CASTG 2 cut(s) 82, 372
TspDTI ATGAA 1 cut(s) 105
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 2 cut(s) 82, 372
XspI CTAG 3 cut(s) 57, 86, 126
ZrmI AGTACT 1 cut(s) 275
Zsp2I ATGCAT 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.