Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000372

Physical Location & Seq

Genomic Coordinates Forward (+)

13154179 .. 13168659

Gene Structure 14481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG071300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAGGGAGGGGTCGCGGTTGATGAAGGCGGTTGGCTCGATGAAAGATCTTGCATCACCAATCCCAGTGAAAAGAGATCGATGCTCAGTAGGGTGCCTCCCCAGTAATTTCGCCGGCGTTTACTGCAATTCCGACAAGCCGGGTGGTATTGGTAGCGCGGATGCCGCCGACTTTAGCGGCGGCAAGGATTATGAATTGGGGCTTTTGGGCGGTGAAGAAGGACTCGACGTCGTTTTAGCGTGTGTGGTTGAGGTCGGTGTGGGTGCGGAGGACGAGAAGGACTCTAACGTCTCTGGCGACAATGCCTTCACTCGCCTCTACTCTGCCGTCGAGTTCGACATTGAAGCTGCTCTTCAGAAAGCGGAGCTTGCTTCAAAAGAGAAAAGTAGGGCATTTGCAGTTGCTCTGAATGCCATGATTCGCCGGACCAAGGCTCGATTGCTTAAAGAGGTTCCCAAGTTGCAGAGATTGGCTGTAAAGAAGGTTAAAGGGCTTTCATCTGAAGAGTTTGCTGCTCCACCGATAAGAGTTTCATATTTTGGAGTGGGAAATAGTGCTAGGGCATCCAAGTTGAATGATGCCGTTGAAATATGTGGGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005215 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0008565 GO:0009506 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0090150 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

200

Amino Acids

21.11

Weight (kDa)

7.54

Isoelectric Point (pI)

31.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000372)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g09000
rosa_chinensis	RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata	RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora	Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa	Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha	Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana	Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	287
AatII	GACGTC	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	93
AccII	CGCG	2 cut(s)	16, 158
AciI	CCGC	9 cut(s)	16, 29, 158, 165, 177, 180, 210, 266, 362
AcuI	CTGAAG	2 cut(s)	338, 522
AcyI	GRCGYC	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	430
AgsI	TTSAA	4 cut(s)	344, 375, 574, 587
AhdI	GACNNNNNGTC	1 cut(s)	227
AluBI	AGCT	2 cut(s)	347, 367
AluI	AGCT	2 cut(s)	347, 367
Alw26I	GTCTC	1 cut(s)	295
ApeKI	GCWGC	2 cut(s)	347, 512
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	426
AsuC2I	CCSGG	1 cut(s)	141
AsuHPI	GGTGA	2 cut(s)	48, 224
AvaII	GGWCC	1 cut(s)	426
BanI	GGYRCC	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	334, 499
BceAI	ACGGC	2 cut(s)	311, 566
BcnI	CCSGG	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	1 cut(s)	558
BglII	AGATCT	1 cut(s)	46
BisI	GCNGC	5 cut(s)	165, 178, 181, 348, 513
BlsI	GCNGC	5 cut(s)	166, 179, 182, 349, 514
Bme1390I	CCNGG	1 cut(s)	141
Bme18I	GGWCC	1 cut(s)	426
BmeRI	GACNNNNNGTC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	426
BmiI	GGNNCC	2 cut(s)	95, 453
BmrFI	CCNGG	1 cut(s)	141
BmrI	ACTGGG	2 cut(s)	59, 96
BmsI	GCATC	5 cut(s)	62, 71, 151, 568, 572
BmuI	ACTGGG	2 cut(s)	59, 96
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
BpuMI	CCSGG	1 cut(s)	141
Bsa29I	ATCGAT	1 cut(s)	79
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	429
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	2 cut(s)	65, 102
BseCI	ATCGAT	1 cut(s)	79
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	2 cut(s)	166, 563
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	2 cut(s)	65, 102
BseXI	GCAGC	2 cut(s)	334, 499
Bsh1236I	CGCG	2 cut(s)	16, 158
BshNI	GGYRCC	1 cut(s)	93
BshVI	ATCGAT	1 cut(s)	79
BsiSI	CCGG	3 cut(s)	114, 140, 424
BslI	CCNNNNNNNGG	1 cut(s)	430
BsmAI	GTCTC	1 cut(s)	295
BsmBI	CGTCTC	1 cut(s)	295
BsmI	GAATGC	1 cut(s)	415
Bsp143I	GATC	2 cut(s)	46, 76
BspACI	CCGC	9 cut(s)	16, 29, 158, 165, 177, 180, 210, 266, 362
BspCNI	CTCAG	1 cut(s)	98
BspDI	ATCGAT	1 cut(s)	79
BspFNI	CGCG	2 cut(s)	16, 158
BspLI	GGNNCC	2 cut(s)	95, 453
BspQI	GCTCTTC	1 cut(s)	357
BspT107I	GGYRCC	1 cut(s)	93
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	65, 102
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	2 cut(s)	46, 76
BssNI	GRCGYC	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	429
Bst6I	CTCTTC	2 cut(s)	357, 498
BstACI	GRCGYC	1 cut(s)	228
BstC8I	GCNNGC	2 cut(s)	115, 369
BstDEI	CTNAG	1 cut(s)	85
BstF5I	GGATG	2 cut(s)	166, 563
BstFNI	CGCG	2 cut(s)	16, 158
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	2 cut(s)	49, 79
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	2 cut(s)	46, 76
BstMWI	GCNNNNNNNGC	4 cut(s)	123, 164, 368, 410
BstSCI	CCNGG	1 cut(s)	139
BstUI	CGCG	2 cut(s)	16, 158
BstV1I	GCAGC	2 cut(s)	334, 499
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
Bsu15I	ATCGAT	1 cut(s)	79
BsuTUI	ATCGAT	1 cut(s)	79
BtsCI	GGATG	2 cut(s)	166, 563
BtsIMutI	CAGTG	1 cut(s)	72
Cac8I	GCNNGC	2 cut(s)	115, 369
CfoI	GCGC	1 cut(s)	158
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	426
ClaI	ATCGAT	1 cut(s)	79
CspCI	CAANNNNNGTGG	2 cut(s)	124, 159
CviAII	CATG	1 cut(s)	415
CviJI	RGCY	8 cut(s)	36, 139, 202, 347, 367, 434, 473, 493
CviKI_1	RGCY	8 cut(s)	36, 139, 202, 347, 367, 434, 473, 493
DdeI	CTNAG	1 cut(s)	85
DpnI	GATC	2 cut(s)	48, 78
DpnII	GATC	2 cut(s)	46, 76
DrdI	GACNNNNNNGTC	1 cut(s)	287
DriI	GACNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	287
Eam1104I	CTCTTC	2 cut(s)	357, 498
Eam1105I	GACNNNNNGTC	1 cut(s)	227
EarI	CTCTTC	2 cut(s)	357, 498
Eco130I	CCWWGG	1 cut(s)	429
Eco47I	GGWCC	1 cut(s)	426
Eco57I	CTGAAG	2 cut(s)	338, 522
EcoT14I	CCWWGG	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	429
Esp3I	CGTCTC	1 cut(s)	295
FaeI	CATG	1 cut(s)	418
FaiI	YATR	4 cut(s)	192, 416, 535, 592
FalI	AAGNNNNNCTT	4 cut(s)	336, 368, 351, 383
FatI	CATG	1 cut(s)	414
Fnu4HI	GCNGC	5 cut(s)	165, 178, 181, 348, 513
FokI	GGATG	2 cut(s)	173, 550
Fsp4HI	GCNGC	5 cut(s)	165, 178, 181, 348, 513
FspBI	CTAG	1 cut(s)	558
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	5 cut(s)	165, 178, 181, 348, 513
HapII	CCGG	3 cut(s)	114, 140, 424
HhaI	GCGC	1 cut(s)	158
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	1 cut(s)	418
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HinfI	GANTC	3 cut(s)	222, 281, 418
HpaII	CCGG	3 cut(s)	114, 140, 424
HphI	GGTGA	2 cut(s)	48, 224
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	4 cut(s)	133, 357, 408, 502
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	3 cut(s)	230, 233, 332
HpyAV	CCTTC	5 cut(s)	19, 212, 271, 316, 475
HpyCH4IV	ACGT	2 cut(s)	228, 288
HpyCH4V	TGCA	4 cut(s)	53, 126, 398, 463
HpyF10VI	GCNNNNNNNGC	4 cut(s)	123, 164, 368, 410
HpyF3I	CTNAG	1 cut(s)	85
HpySE526I	ACGT	2 cut(s)	228, 288
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	418
HspAI	GCGC	1 cut(s)	156
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	46, 76
LguI	GCTCTTC	1 cut(s)	357
LmnI	GCTCC	2 cut(s)	364, 520
LpnPI	CCDG	6 cut(s)	78, 115, 127, 153, 279, 437
Lsp1109I	GCAGC	2 cut(s)	334, 499
LweI	GCATC	5 cut(s)	62, 71, 151, 568, 572
MaeI	CTAG	1 cut(s)	558
MaeII	ACGT	2 cut(s)	228, 288
MalI	GATC	2 cut(s)	48, 78
MboI	GATC	2 cut(s)	46, 76
MboII	GAAGA	3 cut(s)	227, 344, 515
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	3 cut(s)	106, 127, 194
MlyI	GAGTC	2 cut(s)	216, 275
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	5 cut(s)	107, 244, 262, 326, 442
MreI	CGCCGGCG	1 cut(s)	113
MroNI	GCCGGC	1 cut(s)	113
MseI	TTAA	3 cut(s)	444, 486, 601
MspI	CCGG	3 cut(s)	114, 140, 424
MspR9I	CCNGG	1 cut(s)	141
Mva1269I	GAATGC	1 cut(s)	415
MvnI	CGCG	2 cut(s)	16, 158
MwoI	GCNNNNNNNGC	4 cut(s)	123, 164, 368, 410
NaeI	GCCGGC	1 cut(s)	115
NciI	CCSGG	1 cut(s)	141
NdeII	GATC	2 cut(s)	46, 76
NgoMIV	GCCGGC	1 cut(s)	113
NlaIII	CATG	1 cut(s)	418
NlaIV	GGNNCC	2 cut(s)	95, 453
PciSI	GCTCTTC	1 cut(s)	357
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PctI	GAATGC	1 cut(s)	415
PdiI	GCCGGC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	418
PkrI	GCNGC	5 cut(s)	166, 179, 182, 349, 514
PleI	GAGTC	2 cut(s)	216, 275
PpsI	GAGTC	2 cut(s)	216, 275
PspN4I	GGNNCC	2 cut(s)	95, 453
PspPI	GGNCC	1 cut(s)	426
PsuI	RGATCY	1 cut(s)	46
SapI	GCTCTTC	1 cut(s)	357
SaqAI	TTAA	3 cut(s)	444, 486, 601
SatI	GCNGC	5 cut(s)	165, 178, 181, 348, 513
Sau3AI	GATC	2 cut(s)	46, 76
Sau96I	GGNCC	1 cut(s)	426
SchI	GAGTC	2 cut(s)	216, 275
ScrFI	CCNGG	1 cut(s)	141
SetI	ASST	7 cut(s)	231, 255, 291, 349, 369, 453, 486
SfaNI	GCATC	5 cut(s)	62, 71, 151, 568, 572
SgrAI	CRCCGGYG	1 cut(s)	113
SinI	GGWCC	1 cut(s)	426
Sse9I	AATT	3 cut(s)	106, 127, 194
SsiI	CCGC	9 cut(s)	16, 29, 158, 165, 177, 180, 210, 266, 362
SspMI	CTAG	1 cut(s)	558
StyD4I	CCNGG	1 cut(s)	139
StyI	CCWWGG	1 cut(s)	429
TaiI	ACGT	2 cut(s)	231, 291
TaqI	TCGA	6 cut(s)	38, 79, 225, 330, 336, 436
TasI	AATT	3 cut(s)	106, 127, 194
TauI	GCSGC	3 cut(s)	167, 180, 183
TfiI	GAWTC	1 cut(s)	418
Tru1I	TTAA	3 cut(s)	444, 486, 601
Tru9I	TTAA	3 cut(s)	444, 486, 601
TscAI	CASTG	1 cut(s)	72
TseI	GCWGC	2 cut(s)	347, 512
TspDTI	ATGAA	5 cut(s)	38, 56, 207, 486, 522
TspRI	CASTG	1 cut(s)	72
VpaK11BI	GGWCC	1 cut(s)	426
XspI	CTAG	1 cut(s)	558
ZraI	GACGTC	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.