Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000372

Physical Location & Seq

Genomic Coordinates Reverse (-)

13826288 .. 13828326

Gene Structure 2039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG093000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGCGATCAACAAAGGAATCCCTATGACCAGAATTGCTATGAGTGTCGATAATATTGTCACTTCTGGAGCCAAGCCATTATTTTTCCTTGATTACTTTGCTACAAGCAGCCTTGATGTTGATCTTGCTGAAAATGAGTTCTGTAGATTCATGAAAGAACATGGATGGTTGGATGGAAAGGTTGACGCTTTGAAGTATCTTGTTTCACACTTCCAACTTTACTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

75

Amino Acids

8.61

Weight (kDa)

5.47

Isoelectric Point (pI)

9.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000372)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g09000
rosa_chinensis	RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata	RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora	Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa	Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha	Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana	Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	120
BccI	CCATC	2 cut(s)	159, 167
BfmI	CTRYAG	1 cut(s)	142
BisI	GCNGC	1 cut(s)	109
BlsI	GCNGC	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	70
BpmI	CTGGAG	1 cut(s)	87
BsaBI	GATNNNNATC	1 cut(s)	120
Bse1I	ACTGG	1 cut(s)	227
Bse8I	GATNNNNATC	1 cut(s)	120
BseGI	GGATG	2 cut(s)	170, 178
BseJI	GATNNNNATC	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	120
Bsp143I	GATC	2 cut(s)	6, 121
BspHI	TCATGA	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	227
BssMI	GATC	2 cut(s)	6, 121
BstF5I	GGATG	2 cut(s)	170, 178
BstKTI	GATC	2 cut(s)	9, 124
BstMBI	GATC	2 cut(s)	6, 121
BstSFI	CTRYAG	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	120
BtsCI	GGATG	2 cut(s)	170, 178
CciI	TCATGA	1 cut(s)	150
CseI	GACGC	1 cut(s)	194
CviAII	CATG	2 cut(s)	151, 161
CviJI	RGCY	3 cut(s)	71, 76, 111
CviKI_1	RGCY	3 cut(s)	71, 76, 111
DpnI	GATC	2 cut(s)	8, 123
DpnII	GATC	2 cut(s)	6, 121
FaeI	CATG	2 cut(s)	154, 164
FaiI	YATR	4 cut(s)	26, 41, 152, 162
FatI	CATG	2 cut(s)	150, 160
Fnu4HI	GCNGC	1 cut(s)	109
FokI	GGATG	2 cut(s)	177, 185
Fsp4HI	GCNGC	1 cut(s)	109
GluI	GCNGC	1 cut(s)	109
GsuI	CTGGAG	1 cut(s)	87
HgaI	GACGC	1 cut(s)	194
Hin1II	CATG	2 cut(s)	154, 164
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	2 cut(s)	18, 147
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188III	TCNNGA	2 cut(s)	66, 151
Hpy8I	GTNNAC	1 cut(s)	184
Hsp92II	CATG	2 cut(s)	154, 164
Kzo9I	GATC	2 cut(s)	6, 121
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	3 cut(s)	43, 51, 208
Lsp1109I	GCAGC	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	2 cut(s)	8, 123
MboI	GATC	2 cut(s)	6, 121
MluCI	AATT	1 cut(s)	33
MmeI	TCCRAC	1 cut(s)	150
NdeII	GATC	2 cut(s)	6, 121
NlaIII	CATG	2 cut(s)	154, 164
NlaIV	GGNNCC	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	58
PagI	TCATGA	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	18, 147
PkrI	GCNGC	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	70
SatI	GCNGC	1 cut(s)	109
Sau3AI	GATC	2 cut(s)	6, 121
SetI	ASST	1 cut(s)	183
SfcI	CTRYAG	1 cut(s)	142
Sse9I	AATT	1 cut(s)	33
SspI	AATATT	1 cut(s)	55
TaqI	TCGA	1 cut(s)	48
TasI	AATT	1 cut(s)	33
TfiI	GAWTC	2 cut(s)	18, 147
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	108
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	2 cut(s)	139, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.