Rh7CG408700

helicase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000372
Physical Location & Seq
Reverse (-)
52427270 .. 52427696
427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG408700.1

Sequence Viewer

Length: 294 bp
ATGCCTTCGCCGATATCTGCAACAAGTACGACTGATACGACGTCGACAAGTAGAAGGACTCTAACATTTCCGGCGACGATGCCTTCACTCGTCTCTAATCTGCCGTCGAGTCCGACATTGAAGCTGTTCTTTAAGTTCAGTCTCTTTCTCAGTTTCTTTCAGATTCAAACTAAAGTAGGGCTTGCTTCAAAAGAGAAAAGTACGGCATCTGCAGTTACTTTGAATGCCAAGATTCGCCGGACCAAGGCTCGATTGCTTAAAGAGGTTCCCAAGTTGAAGAGATTGGGTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000775 GO:0000785 GO:0000792 GO:0001655 GO:0001775 GO:0002376 GO:0002520 GO:0002521 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005721 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006346 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010216 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0010941 GO:0016043 GO:0016458 GO:0016569 GO:0019219 GO:0019222 GO:0022607 GO:0023051 GO:0023057 GO:0030097 GO:0030098 GO:0030154 GO:0031055 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031497 GO:0031507 GO:0031508 GO:0032259 GO:0032501 GO:0032502 GO:0032943 GO:0034097 GO:0034508 GO:0034622 GO:0034641 GO:0040029 GO:0042221 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044728 GO:0045321 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0046649 GO:0046651 GO:0048513 GO:0048519 GO:0048523 GO:0048534 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0060548 GO:0065003 GO:0065004 GO:0065007 GO:0070661 GO:0070828 GO:0070887 GO:0071103 GO:0071310 GO:0071345 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0098687 GO:1901360 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:1990823 GO:1990830 GO:2000112 GO:2000113 GO:2001141 GO:2001233 GO:2001234 GO:2001242 GO:2001243
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

97

Amino Acids

10.62

Weight (kDa)

11.75

Isoelectric Point (pI)

51.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 44
AccI GTMKAC 1 cut(s) 44
AcyI GRCGYC 1 cut(s) 41
AfaI GTAC 2 cut(s) 28, 202
AfiI CCNNNNNNNGG 1 cut(s) 244
AgsI TTSAA 5 cut(s) 121, 167, 189, 223, 277
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
Alw26I GTCTC 2 cut(s) 97, 146
Asp700I GAANNNNTTC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 240
AvaII GGWCC 1 cut(s) 240
BceAI ACGGC 2 cut(s) 88, 219
BcoDI GTCTC 2 cut(s) 97, 146
BfmI CTRYAG 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 240
BmiI GGNNCC 1 cut(s) 267
BmsI GCATC 2 cut(s) 69, 215
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 243
Bsc4I CCNNNNNNNGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 243
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMII CTCAG 1 cut(s) 163
BsiSI CCGG 2 cut(s) 71, 238
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 2 cut(s) 97, 146
BsmBI CGTCTC 1 cut(s) 97
BsmI GAATGC 1 cut(s) 229
BspCNI CTCAG 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 267
BspMAI CTGCAG 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 243
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 243
Bst6I CTCTTC 1 cut(s) 272
BstACI GRCGYC 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 149
BstMAI GTCTC 2 cut(s) 97, 146
BstSFI CTRYAG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 240
Csp6I GTAC 2 cut(s) 27, 201
CviJI RGCY 3 cut(s) 124, 181, 248
CviKI_1 RGCY 3 cut(s) 124, 181, 248
CviQI GTAC 2 cut(s) 27, 201
DdeI CTNAG 1 cut(s) 149
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 243
Eco32I GATATC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 240
EcoRV GATATC 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
Esp3I CGTCTC 1 cut(s) 97
FalI AAGNNNNNCTT 4 cut(s) 113, 145, 165, 197
FblI GTMKAC 1 cut(s) 44
HapII CCGG 2 cut(s) 71, 238
Hin1I GRCGYC 1 cut(s) 41
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HinfI GANTC 4 cut(s) 58, 109, 163, 232
HpaII CCGG 2 cut(s) 71, 238
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 2 cut(s) 114, 162
Hpy8I GTNNAC 1 cut(s) 45
Hpy99I CGWCG 4 cut(s) 43, 46, 79, 109
HpyAV CCTTC 3 cut(s) 15, 48, 93
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 2 cut(s) 20, 212
HpyF3I CTNAG 1 cut(s) 149
HpySE526I ACGT 1 cut(s) 41
Hsp92I GRCGYC 1 cut(s) 41
LpnPI CCDG 2 cut(s) 84, 251
LweI GCATC 2 cut(s) 69, 215
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 1 cut(s) 214
MboII GAAGA 1 cut(s) 289
MlyI GAGTC 2 cut(s) 52, 118
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 1 cut(s) 256
MroXI GAANNNNTTC 1 cut(s) 125
MseI TTAA 2 cut(s) 132, 258
MspI CCGG 2 cut(s) 71, 238
Mva1269I GAATGC 1 cut(s) 229
NlaIV GGNNCC 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PctI GAATGC 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 125
PfeI GAWTC 2 cut(s) 163, 232
PleI GAGTC 2 cut(s) 52, 117
PpsI GAGTC 2 cut(s) 52, 117
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 240
PstI CTGCAG 1 cut(s) 214
RsaI GTAC 2 cut(s) 28, 202
RsaNI GTAC 2 cut(s) 27, 201
SalI GTCGAC 1 cut(s) 43
SaqAI TTAA 2 cut(s) 132, 258
Sau96I GGNCC 1 cut(s) 240
SchI GAGTC 2 cut(s) 52, 118
SetI ASST 3 cut(s) 44, 126, 267
SfaNI GCATC 2 cut(s) 69, 215
SfcI CTRYAG 1 cut(s) 210
SinI GGWCC 1 cut(s) 240
StyI CCWWGG 1 cut(s) 243
TaiI ACGT 1 cut(s) 44
TaqI TCGA 3 cut(s) 44, 107, 250
TfiI GAWTC 2 cut(s) 163, 232
Tru1I TTAA 2 cut(s) 132, 258
Tru9I TTAA 2 cut(s) 132, 258
VpaK11BI GGWCC 1 cut(s) 240
XmiI GTMKAC 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 125
ZraI GACGTC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.