Rh4AG260400

CMP-sialic acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000372
Physical Location & Seq
Reverse (-)
57665602 .. 57667700
2099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG260400.1

Sequence Viewer

Length: 615 bp
ATGAGCCACGCCAAGAGAAGCGTTCCCGGGACTGTGCCGATGAAGCCGAATTTCGACGAGCGGAAACCCTCGCCGGTTGTCACCACCTCCACCGGCAAGCGCGCTCTTAATTACAATCAGGTTAGTTACCTTCAGAATGACAGAGACGGTAGCTTGAAGAAGGCCTACAAAGAGTGGACTTTGGTTGGTGCATTGACCGCTTCTGGGCTTCCCACTGCCATTTATGCACTCCAGAATAGTTTGCTTCAGATTTCGTACAAGAATCTCGATTCTTTAACCTTCTCAATGCTCAACCAAACTAAGATCATTTTTATTGCTATCTGTACTTATTTGATATTGAGCTGTTCTTCTAAGTTTCGAGGAAGGGTTGAGCAAAAGTCCTCTCTGTGTCAATGGGCTTCCCAGGTTAAGAAGCACTGGTCATACTTGATGACTGTAGAGATGTCTATTGTTGGAAGTTTTTGCTTGTTGGTTAGCACCACTAAGTCTCTCGAAGGAGAAGCTATCAGAAAACATGGGCTTTTCTATGGATGGATTCTACTGACTTGGATCCCAGTCAAGTCCAATGCCTTTGGTGGAATTCTTGTTGGCCTAGTTACTGTATTCTTGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005338 GO:0005342 GO:0005463 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009555 GO:0009653 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010208 GO:0010584 GO:0010605 GO:0010927 GO:0012505 GO:0015075 GO:0015136 GO:0015165 GO:0015318 GO:0015711 GO:0015739 GO:0015780 GO:0015789 GO:0015849 GO:0015931 GO:0015932 GO:0016043 GO:0019222 GO:0022607 GO:0022857 GO:0030162 GO:0030198 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032434 GO:0032435 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0042176 GO:0042177 GO:0043062 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045861 GO:0046942 GO:0046943 GO:0048229 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051341 GO:0051354 GO:0055085 GO:0060255 GO:0061136 GO:0065007 GO:0065009 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0085029 GO:0090481 GO:0098656 GO:1901264 GO:1901505 GO:1901799 GO:1902183 GO:1903050 GO:1903051 GO:1903069 GO:1903070 GO:1903362 GO:1903363 GO:1903573 GO:1903825 GO:1903856 GO:1903857 GO:1904292 GO:1904293 GO:1905039 GO:1905897 GO:1990569 GO:2000058 GO:2000059
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nuc_sug_transp

Protein Analysis

204

Amino Acids

22.7

Weight (kDa)

9.74

Isoelectric Point (pI)

34.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nuc_sug_transp PF04142 70 - 114 9.5e-07 Nucleotide-sugar transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 61
AccII CGCG 1 cut(s) 102
AciI CCGC 2 cut(s) 61, 198
AclWI GGATC 2 cut(s) 544, 557
AcsI RAATTY 2 cut(s) 49, 579
AcuI CTGAAG 2 cut(s) 116, 230
AfaI GTAC 2 cut(s) 257, 325
AfiI CCNNNNNNNGG 1 cut(s) 204
AgsI TTSAA 1 cut(s) 157
AjnI CCWGG 1 cut(s) 402
AluBI AGCT 3 cut(s) 153, 342, 503
AluI AGCT 3 cut(s) 153, 342, 503
Alw26I GTCTC 2 cut(s) 138, 492
AlwI GGATC 2 cut(s) 544, 557
Ama87I CYCGRG 1 cut(s) 26
AoxI GGCC 3 cut(s) 162, 589, 609
ApoI RAATTY 2 cut(s) 49, 579
AspLEI GCGC 2 cut(s) 102, 104
AsuC2I CCSGG 2 cut(s) 27, 28
AsuHPI GGTGA 1 cut(s) 73
AvaI CYCGRG 1 cut(s) 26
BamHI GGATCC 1 cut(s) 549
BarI GAAGNNNNNNTAC 2 cut(s) 149, 181
BccI CCATC 1 cut(s) 525
BciT130I CCWGG 1 cut(s) 404
BcnI CCSGG 2 cut(s) 27, 28
BcoDI GTCTC 2 cut(s) 138, 492
BfaI CTAG 2 cut(s) 593, 613
BfmI CTRYAG 1 cut(s) 435
Bme1390I CCNGG 3 cut(s) 27, 28, 404
BmeT110I CYCGRG 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 551
BmrFI CCNGG 3 cut(s) 27, 28, 404
BmrI ACTGGG 1 cut(s) 548
BmuI ACTGGG 1 cut(s) 548
BpmI CTGGAG 1 cut(s) 215
BpuMI CCSGG 2 cut(s) 27, 28
BsaJI CCNNGG 2 cut(s) 26, 402
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse118I RCCGGY 2 cut(s) 73, 92
Bse1I ACTGG 2 cut(s) 422, 554
BseBI CCWGG 1 cut(s) 404
BseDI CCNNGG 2 cut(s) 26, 402
BseGI GGATG 1 cut(s) 536
BseLI CCNNNNNNNGG 1 cut(s) 204
BseNI ACTGG 2 cut(s) 422, 554
BsePI GCGCGC 1 cut(s) 100
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 3 cut(s) 164, 591, 611
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 3 cut(s) 27, 74, 93
BslFI GGGAC 1 cut(s) 43
BslI CCNNNNNNNGG 1 cut(s) 204
BsmAI GTCTC 2 cut(s) 138, 492
BsmBI CGTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 43
BsnI GGCC 3 cut(s) 164, 591, 611
BsoBI CYCGRG 1 cut(s) 26
Bsp143I GATC 2 cut(s) 303, 549
BspACI CCGC 2 cut(s) 61, 198
BspANI GGCC 3 cut(s) 164, 591, 611
BspFNI CGCG 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 551
BspPI GGATC 2 cut(s) 544, 557
BsrBI CCGCTC 1 cut(s) 61
BsrFI RCCGGY 2 cut(s) 73, 92
BsrI ACTGG 2 cut(s) 422, 554
BssAI RCCGGY 2 cut(s) 73, 92
BssECI CCNNGG 2 cut(s) 26, 402
BssHII GCGCGC 1 cut(s) 100
BssMI GATC 2 cut(s) 303, 549
Bst2UI CCWGG 1 cut(s) 404
Bst4CI ACNGT 4 cut(s) 34, 149, 436, 601
BstC8I GCNNGC 2 cut(s) 98, 102
BstDEI CTNAG 3 cut(s) 300, 351, 483
BstF5I GGATG 1 cut(s) 536
BstFNI CGCG 1 cut(s) 102
BstHHI GCGC 2 cut(s) 102, 104
BstKTI GATC 2 cut(s) 306, 552
BstMAI GTCTC 2 cut(s) 138, 492
BstMBI GATC 2 cut(s) 303, 549
BstMWI GCNNNNNNNGC 3 cut(s) 43, 197, 224
BstNI CCWGG 1 cut(s) 404
BstSCI CCNGG 3 cut(s) 25, 26, 402
BstSFI CTRYAG 1 cut(s) 435
BstUI CGCG 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 549
BstYI RGATCY 1 cut(s) 549
BsuRI GGCC 3 cut(s) 164, 591, 611
BtsCI GGATG 1 cut(s) 536
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 2 cut(s) 213, 415
Cac8I GCNNGC 2 cut(s) 98, 102
CfoI GCGC 2 cut(s) 102, 104
Cfr10I RCCGGY 2 cut(s) 73, 92
Cfr9I CCCGGG 1 cut(s) 26
Csp6I GTAC 2 cut(s) 256, 324
CviAII CATG 1 cut(s) 515
CviQI GTAC 2 cut(s) 256, 324
DdeI CTNAG 3 cut(s) 300, 351, 483
DpnI GATC 2 cut(s) 305, 551
DpnII GATC 2 cut(s) 303, 549
Eco147I AGGCCT 1 cut(s) 164
Eco57I CTGAAG 2 cut(s) 116, 230
Eco88I CYCGRG 1 cut(s) 26
EcoRI GAATTC 1 cut(s) 579
EcoRII CCWGG 1 cut(s) 402
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 1 cut(s) 518
FaiI YATR 4 cut(s) 225, 424, 516, 528
FaqI GGGAC 1 cut(s) 43
FatI CATG 1 cut(s) 514
FokI GGATG 1 cut(s) 543
FspBI CTAG 2 cut(s) 593, 613
GlaI GCGC 2 cut(s) 101, 103
GsuI CTGGAG 1 cut(s) 215
HaeIII GGCC 3 cut(s) 164, 591, 611
HapII CCGG 3 cut(s) 27, 74, 93
HhaI GCGC 2 cut(s) 102, 104
Hin1II CATG 1 cut(s) 518
Hin6I GCGC 2 cut(s) 100, 102
HinP1I GCGC 2 cut(s) 100, 102
HinfI GANTC 3 cut(s) 262, 269, 535
HpaII CCGG 3 cut(s) 27, 74, 93
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 3 cut(s) 135, 249, 509
Hpy188III TCNNGA 3 cut(s) 232, 266, 491
Hpy8I GTNNAC 1 cut(s) 177
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 5 cut(s) 140, 154, 289, 357, 488
HpyCH4III ACNGT 4 cut(s) 34, 149, 436, 601
HpyCH4V TGCA 2 cut(s) 191, 227
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 197, 224
HpyF3I CTNAG 3 cut(s) 300, 351, 483
Hsp92II CATG 1 cut(s) 518
HspAI GCGC 2 cut(s) 100, 102
Kzo9I GATC 2 cut(s) 303, 549
MaeI CTAG 2 cut(s) 593, 613
MaeIII GTNAC 3 cut(s) 79, 125, 595
MalI GATC 2 cut(s) 305, 551
MbiI CCGCTC 1 cut(s) 61
MboI GATC 2 cut(s) 303, 549
MboII GAAGA 2 cut(s) 169, 339
MflI RGATCY 1 cut(s) 549
MluCI AATT 3 cut(s) 49, 109, 579
MmeI TCCRAC 1 cut(s) 433
MnlI CCTC 4 cut(s) 79, 97, 353, 391
MseI TTAA 3 cut(s) 108, 275, 408
MspI CCGG 3 cut(s) 27, 74, 93
MspR9I CCNGG 3 cut(s) 27, 28, 404
MvaI CCWGG 1 cut(s) 404
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 3 cut(s) 43, 197, 224
NciI CCSGG 2 cut(s) 27, 28
NdeII GATC 2 cut(s) 303, 549
NlaIII CATG 1 cut(s) 518
NlaIV GGNNCC 1 cut(s) 551
NmuCI GTSAC 1 cut(s) 79
PauI GCGCGC 1 cut(s) 100
PceI AGGCCT 1 cut(s) 164
PfeI GAWTC 3 cut(s) 262, 269, 535
Psp6I CCWGG 1 cut(s) 402
PspGI CCWGG 1 cut(s) 402
PspN4I GGNNCC 1 cut(s) 551
PsuI RGATCY 1 cut(s) 549
PteI GCGCGC 1 cut(s) 100
RsaI GTAC 2 cut(s) 257, 325
RsaNI GTAC 2 cut(s) 256, 324
SaqAI TTAA 3 cut(s) 108, 275, 408
Sau3AI GATC 2 cut(s) 303, 549
ScrFI CCNGG 3 cut(s) 27, 28, 404
SetI ASST 8 cut(s) 89, 123, 132, 155, 281, 344, 408, 505
SfcI CTRYAG 1 cut(s) 435
SmaI CCCGGG 1 cut(s) 28
Sse9I AATT 3 cut(s) 49, 109, 579
SseBI AGGCCT 1 cut(s) 164
SsiI CCGC 2 cut(s) 61, 198
SspMI CTAG 2 cut(s) 593, 613
StuI AGGCCT 1 cut(s) 164
StyD4I CCNGG 3 cut(s) 25, 26, 402
TaaI ACNGT 4 cut(s) 34, 149, 436, 601
TaqI TCGA 4 cut(s) 54, 267, 358, 492
TasI AATT 3 cut(s) 49, 109, 579
TatI WGTACW 1 cut(s) 323
TfiI GAWTC 3 cut(s) 262, 269, 535
Tru1I TTAA 3 cut(s) 108, 275, 408
Tru9I TTAA 3 cut(s) 108, 275, 408
TscAI CASTG 2 cut(s) 220, 422
TseFI GTSAC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 56
TspMI CCCGGG 1 cut(s) 26
TspRI CASTG 2 cut(s) 220, 422
XapI RAATTY 2 cut(s) 49, 579
XmaI CCCGGG 1 cut(s) 26
XspI CTAG 2 cut(s) 593, 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.