Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000372

Physical Location & Seq

Genomic Coordinates Forward (+)

53889072 .. 53891145

Gene Structure 2074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003882

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGAATGCTGCGGTCTCCGGGAACTGCTCCATTATTAGTAGCTTAGCGTCCCGGTACTCGAAGAGGAAGAGCAATAGTGTACCAAATGATGCACTGGAGCATGATGACCTGGACCATAAGGCTGCCGAACTCTGGGATTTGGTTGCTATTAGTGTCGATGATATTGTCACTTTTAGAGCCAAGCCATTATTTTTCCTTGATTACTTTGCTACAAGCCGCCTTGATGTTGATCTTGCTGAAAAGGTTATTAGGGGAATTGTCGATGGTTGCCAACAATCTGACCATACTCTTTTAGTGAATTGCATATATTTTCAGACTGCCAAGATGCCGGGTTTCTATGCAGAGGGTGAGTATGACCTCACTAGTTTTGCAGTTGTAATTGTGAACAAGGAATCAGTGATTGATGATAAGAATATTGTGGCTGGAGATGTCCTCATCAACCTACCATCCAGTGGAGTTCATTCCAATGGTTTTTCTCTTGTAAGAACGTCGGTGCTTGACATAATTAGCAAGGGAGGTGTGAAGGGGGTAGCCCACATCACAGGAGGTGATTTCACTGACAATATACCTAGAGTATTTCCAAAAGGCCTAGGAGCTGTCATCTATAATCATTCATGGGAAGTCCAAGCTGTTTTCAAATGGATCCAAGAGGCTAGAAGAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

222

Amino Acids

24.22

Weight (kDa)

5.46

Isoelectric Point (pI)

30.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS	PF00586	45 - 96	3.3e-07	AIR synthase related protein, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000372)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g09000
rosa_chinensis	RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata	RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora	Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa	Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha	Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana	Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	452
AciI	CCGC	2 cut(s)	11, 217
AclWI	GGATC	2 cut(s)	637, 650
AfaI	GTAC	2 cut(s)	56, 81
AfiI	CCNNNNNNNGG	2 cut(s)	132, 452
AgsI	TTSAA	1 cut(s)	637
AhlI	ACTAGT	1 cut(s)	362
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	3 cut(s)	42, 596, 629
AluI	AGCT	3 cut(s)	42, 596, 629
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	2 cut(s)	637, 650
AoxI	GGCC	1 cut(s)	586
ApeKI	GCWGC	2 cut(s)	8, 122
AspA2I	CCTAGG	1 cut(s)	589
AspS9I	GGNCC	1 cut(s)	112
AsuC2I	CCSGG	3 cut(s)	19, 52, 330
AsuHPI	GGTGA	2 cut(s)	359, 560
AvaII	GGWCC	1 cut(s)	112
AvrII	CCTAGG	1 cut(s)	589
BamHI	GGATCC	1 cut(s)	642
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	2 cut(s)	257, 454
BciT130I	CCWGG	1 cut(s)	110
BcnI	CCSGG	3 cut(s)	19, 52, 330
BcoDI	GTCTC	1 cut(s)	19
BcuI	ACTAGT	1 cut(s)	362
BfaI	CTAG	4 cut(s)	363, 570, 590, 654
BisI	GCNGC	3 cut(s)	9, 123, 217
BlnI	CCTAGG	1 cut(s)	589
BlpI	GCTNAGC	1 cut(s)	43
BlsI	GCNGC	3 cut(s)	10, 124, 218
Bme1390I	CCNGG	4 cut(s)	19, 52, 110, 330
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	644
BmrFI	CCNGG	4 cut(s)	19, 52, 110, 330
BmsI	GCATC	2 cut(s)	79, 315
BplI	GAGNNNNNCTC	2 cut(s)	417, 449
BpmI	CTGGAG	2 cut(s)	116, 444
Bpu1102I	GCTNAGC	1 cut(s)	43
BpuMI	CCSGG	3 cut(s)	19, 52, 330
BsaBI	GATNNNNATC	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	589
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 452
Bse1I	ACTGG	2 cut(s)	99, 450
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	589
BseGI	GGATG	1 cut(s)	446
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	2 cut(s)	132, 452
BseNI	ACTGG	2 cut(s)	99, 450
BseXI	GCAGC	1 cut(s)	109
BshFI	GGCC	1 cut(s)	588
BsiSI	CCGG	3 cut(s)	18, 52, 329
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	2 cut(s)	132, 452
BsmAI	GTCTC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	588
Bso31I	GGTCTC	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	229, 642
Bsp1720I	GCTNAGC	1 cut(s)	43
BspACI	CCGC	2 cut(s)	11, 217
BspANI	GGCC	1 cut(s)	588
BspLI	GGNNCC	1 cut(s)	644
BspPI	GGATC	2 cut(s)	637, 650
BspQI	GCTCTTC	1 cut(s)	62
BspTNI	GGTCTC	1 cut(s)	19
BsrI	ACTGG	2 cut(s)	99, 450
BssECI	CCNNGG	1 cut(s)	589
BssMI	GATC	2 cut(s)	229, 642
BssT1I	CCWWGG	1 cut(s)	589
Bst2UI	CCWGG	1 cut(s)	110
Bst6I	CTCTTC	3 cut(s)	56, 62, 652
BstDEI	CTNAG	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	446
BstKTI	GATC	2 cut(s)	232, 645
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	2 cut(s)	229, 642
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	4 cut(s)	17, 50, 108, 328
BstV1I	GCAGC	1 cut(s)	109
BstX2I	RGATCY	1 cut(s)	642
BstYI	RGATCY	1 cut(s)	642
BsuRI	GGCC	1 cut(s)	588
BtsCI	GGATG	1 cut(s)	446
BtsIMutI	CAGTG	4 cut(s)	92, 402, 457, 555
Cfr13I	GGNCC	1 cut(s)	112
CseI	GACGC	1 cut(s)	36
Csp6I	GTAC	2 cut(s)	55, 80
CviAII	CATG	2 cut(s)	101, 615
CviQI	GTAC	2 cut(s)	55, 80
DdeI	CTNAG	1 cut(s)	43
DpnI	GATC	2 cut(s)	231, 644
DpnII	GATC	2 cut(s)	229, 642
Eam1104I	CTCTTC	3 cut(s)	56, 62, 652
EarI	CTCTTC	3 cut(s)	56, 62, 652
Eco130I	CCWWGG	1 cut(s)	589
Eco147I	AGGCCT	1 cut(s)	588
Eco31I	GGTCTC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	589
FaeI	CATG	2 cut(s)	104, 618
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	2 cut(s)	100, 614
Fnu4HI	GCNGC	3 cut(s)	9, 123, 217
FokI	GGATG	1 cut(s)	433
Fsp4HI	GCNGC	3 cut(s)	9, 123, 217
FspBI	CTAG	4 cut(s)	363, 570, 590, 654
GluI	GCNGC	3 cut(s)	9, 123, 217
GsuI	CTGGAG	2 cut(s)	116, 444
HaeIII	GGCC	1 cut(s)	588
HapII	CCGG	3 cut(s)	18, 52, 329
HgaI	GACGC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	104, 618
HinfI	GANTC	1 cut(s)	392
HpaII	CCGG	3 cut(s)	18, 52, 329
HphI	GGTGA	2 cut(s)	359, 560
Hpy166II	GTNNAC	2 cut(s)	80, 385
Hpy188I	TCNGA	2 cut(s)	280, 315
Hpy8I	GTNNAC	2 cut(s)	80, 385
Hpy99I	CGWCG	1 cut(s)	493
HpyAV	CCTTC	1 cut(s)	517
HpyCH4IV	ACGT	1 cut(s)	488
HpyCH4V	TGCA	4 cut(s)	92, 303, 341, 371
HpyF3I	CTNAG	1 cut(s)	43
HpySE526I	ACGT	1 cut(s)	488
Hsp92II	CATG	2 cut(s)	104, 618
Kzo9I	GATC	2 cut(s)	229, 642
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	3 cut(s)	32, 97, 593
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	2 cut(s)	79, 315
MaeI	CTAG	4 cut(s)	363, 570, 590, 654
MaeII	ACGT	1 cut(s)	488
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	2 cut(s)	231, 644
MboI	GATC	2 cut(s)	229, 642
MboII	GAAGA	2 cut(s)	73, 79
MflI	RGATCY	1 cut(s)	642
MluCI	AATT	4 cut(s)	255, 298, 378, 504
MnlI	CCTC	7 cut(s)	57, 337, 368, 443, 509, 539, 643
MslI	CAYNNNNRTG	1 cut(s)	465
MspI	CCGG	3 cut(s)	18, 52, 329
MspR9I	CCNGG	4 cut(s)	19, 52, 110, 330
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	110
NciI	CCSGG	3 cut(s)	19, 52, 330
NdeII	GATC	2 cut(s)	229, 642
NlaIII	CATG	2 cut(s)	104, 618
NlaIV	GGNNCC	1 cut(s)	644
NmuCI	GTSAC	1 cut(s)	166
PceI	AGGCCT	1 cut(s)	588
PciSI	GCTCTTC	1 cut(s)	62
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	392
PflMI	CCANNNNNTGG	1 cut(s)	452
PfoI	TCCNGGA	1 cut(s)	17
PkrI	GCNGC	3 cut(s)	10, 124, 218
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	644
PspPI	GGNCC	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	642
RsaI	GTAC	2 cut(s)	56, 81
RsaNI	GTAC	2 cut(s)	55, 80
RseI	CAYNNNNRTG	1 cut(s)	465
SapI	GCTCTTC	1 cut(s)	62
SatI	GCNGC	3 cut(s)	9, 123, 217
Sau3AI	GATC	2 cut(s)	229, 642
Sau96I	GGNCC	1 cut(s)	112
ScrFI	CCNGG	4 cut(s)	19, 52, 110, 330
SfaNI	GCATC	2 cut(s)	79, 315
SinI	GGWCC	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	465
SpeI	ACTAGT	1 cut(s)	362
Sse9I	AATT	4 cut(s)	255, 298, 378, 504
SseBI	AGGCCT	1 cut(s)	588
SsiI	CCGC	2 cut(s)	11, 217
SspI	AATATT	1 cut(s)	415
SspMI	CTAG	4 cut(s)	363, 570, 590, 654
StuI	AGGCCT	1 cut(s)	588
StyD4I	CCNGG	4 cut(s)	17, 50, 108, 328
StyI	CCWWGG	1 cut(s)	589
TaiI	ACGT	1 cut(s)	491
TaqI	TCGA	3 cut(s)	59, 156, 261
TasI	AATT	4 cut(s)	255, 298, 378, 504
TauI	GCSGC	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	392
TscAI	CASTG	4 cut(s)	99, 402, 457, 562
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	2 cut(s)	8, 122
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	3 cut(s)	17, 449, 603
TspRI	CASTG	4 cut(s)	99, 402, 457, 562
Van91I	CCANNNNNTGG	1 cut(s)	452
VpaK11BI	GGWCC	1 cut(s)	112
XmaJI	CCTAGG	1 cut(s)	589
XspI	CTAG	4 cut(s)	363, 570, 590, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.