Rorug03G0350400

CMP-sialic acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000372
Physical Location & Seq
Forward (+)
42792480 .. 42793544
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0350400.1

Sequence Viewer

Length: 984 bp
ATGGCGTTCTCACCCTTTATCGTACCCGATTCGCCAGACCAAGTCAAAGATGCTTGTGACGAGAACGAAGCTAATTCCAAGGACGTTATCATGTCCAACAAGACCACCGAGCAGACAAAAAAGAAGAGGAAGAAGAAGAAGAAGAAGACAAGGCTTGCAGAGGAGACGAAGCAAGTCGACATCAACGGACCTGAAAAAGAAAATCAGTCTGTTGATGAGGAACAAGACCCGAAAAACAAGAGGGTGAAAGTAGCAGCTTCACCGGCTCCAGAAGAGAACAAGTCCAACACCAAATCGTCTTGTGCTGGAATAACATGGAGCAAAGACGATGAGATTGTTATTTTGGGCGGCCTGATCTCGTTTCAGGGAGACGAGAGAGAGTATAAAAGCAAGGAATTTTATGAATACATAAAGAGTCGCCTCAGCCAGGGAGATTTGAACCAAGTAAGGGACAAAGTAAAATCCCTTAAGAGAAAATATATGGGGATGCAGAATCAGACGTTCATAGAAACTTTCCAGAAGGGGCGTTACCAAGAGATGAAGGTGTTCAACTTGTCCAAAATTTATTGGGGTAAGTTTGATGCTGCTGATGATGACAAATTAAACAAGGAGAAGGAGGAAACAATACTAGTGCAGGTGGCTGACGATGAGGAGGAGGAGGAGAATGAGGAGGAGGAGGAGGAAAAGGAGGAGGAAACAATACAAGTGAAGGTGGCGGACGATGAGAAGATGATTGATGATGATGATCAGAGCATGCCAAAGATTAGTGGAGTTCTTCGTCGTGGTTTGAGAGACCATTTTCGGAGAGAGCACTTTGATCACAGGTGGGCTGAGGAGCAGGATCTCGAGGACTTGGAGAACAAGTGGAAGGCATACAAAATTGCTGAGGCCAAATCGAATTTGGCGGAAGCCCATTTTCGTAAAGCGCTCAATTGCTGCACACTCAAGGCCTACCGGATCTTTGGTTATCAAAATAATTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005338 GO:0005342 GO:0005463 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009555 GO:0009653 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010208 GO:0010584 GO:0010605 GO:0010927 GO:0012505 GO:0015075 GO:0015136 GO:0015165 GO:0015318 GO:0015711 GO:0015739 GO:0015780 GO:0015789 GO:0015849 GO:0015931 GO:0015932 GO:0016043 GO:0019222 GO:0022607 GO:0022857 GO:0030162 GO:0030198 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032434 GO:0032435 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0042176 GO:0042177 GO:0043062 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045861 GO:0046942 GO:0046943 GO:0048229 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051341 GO:0051354 GO:0055085 GO:0060255 GO:0061136 GO:0065007 GO:0065009 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0085029 GO:0090481 GO:0098656 GO:1901264 GO:1901505 GO:1901799 GO:1902183 GO:1903050 GO:1903051 GO:1903069 GO:1903070 GO:1903362 GO:1903363 GO:1903573 GO:1903825 GO:1903856 GO:1903857 GO:1904292 GO:1904293 GO:1905039 GO:1905897 GO:1990569 GO:2000058 GO:2000059
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nuc_sug_transp

Protein Analysis

327

Amino Acids

38.18

Weight (kDa)

5.19

Isoelectric Point (pI)

57.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GeBP-like_DBD PF04504 105 - 191 1.7e-14 Glabrous-enhancer-binding protein-like family, DBD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 625
Acc36I ACCTGC 1 cut(s) 625
AccI GTMKAC 1 cut(s) 177
AciI CCGC 3 cut(s) 348, 716, 905
AclWI GGATC 2 cut(s) 849, 965
AcsI RAATTY 3 cut(s) 395, 561, 898
AfaI GTAC 1 cut(s) 24
AfeI AGCGCT 1 cut(s) 927
AfiI CCNNNNNNNGG 2 cut(s) 427, 448
AflII CTTAAG 1 cut(s) 467
AgsI TTSAA 2 cut(s) 439, 550
AhlI ACTAGT 1 cut(s) 628
AjnI CCWGG 1 cut(s) 426
AluBI AGCT 2 cut(s) 71, 257
AluI AGCT 2 cut(s) 71, 257
Alw21I GWGCWC 1 cut(s) 813
Alw26I GTCTC 3 cut(s) 158, 363, 786
AlwI GGATC 2 cut(s) 849, 965
Ama87I CYCGRG 1 cut(s) 845
Aor51HI AGCGCT 1 cut(s) 927
AoxI GGCC 3 cut(s) 349, 888, 948
ApeKI GCWGC 3 cut(s) 254, 584, 936
ApoI RAATTY 3 cut(s) 395, 561, 898
Asp700I GAANNNNTTC 1 cut(s) 545
AspLEI GCGC 1 cut(s) 928
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 3 cut(s) 3, 252, 256
AvaI CYCGRG 1 cut(s) 845
AvaII GGWCC 1 cut(s) 188
BarI GAAGNNNNNNTAC 2 cut(s) 512, 544
BbsI GAAGAC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 813
BbvCI CCTCAGC 3 cut(s) 422, 831, 885
BbvI GCAGC 3 cut(s) 266, 571, 923
BciT130I CCWGG 1 cut(s) 428
BclI TGATCA 2 cut(s) 745, 817
BcoDI GTCTC 3 cut(s) 158, 363, 786
BcuI ACTAGT 1 cut(s) 628
BfaI CTAG 2 cut(s) 629, 982
BfoI RGCGCY 1 cut(s) 929
BfrI CTTAAG 1 cut(s) 467
BfuAI ACCTGC 1 cut(s) 625
BisI GCNGC 4 cut(s) 255, 349, 585, 937
BlsI GCNGC 4 cut(s) 256, 350, 586, 938
Bme1390I CCNGG 1 cut(s) 428
Bme18I GGWCC 1 cut(s) 188
BmeT110I CYCGRG 1 cut(s) 845
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 428
BmsI GCATC 3 cut(s) 40, 477, 571
BpiI GAAGAC 1 cut(s) 152
BpmI CTGGAG 1 cut(s) 252
Bpu10I CCTNAGC 3 cut(s) 422, 831, 885
BpuEI CTTGAG 1 cut(s) 929
BsaBI GATNNNNATC 1 cut(s) 744
BsaI GGTCTC 1 cut(s) 786
BsaJI CCNNGG 2 cut(s) 78, 427
BsaWI WCCGGW 1 cut(s) 954
BsaXI ACNNNNNCTCC 2 cut(s) 848, 878
Bsc4I CCNNNNNNNGG 2 cut(s) 427, 448
Bse118I RCCGGY 1 cut(s) 262
Bse8I GATNNNNATC 1 cut(s) 744
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 2 cut(s) 78, 427
BseGI GGATG 1 cut(s) 492
BseJI GATNNNNATC 1 cut(s) 744
BseLI CCNNNNNNNGG 2 cut(s) 427, 448
BseMII CTCAG 3 cut(s) 436, 822, 876
BseXI GCAGC 3 cut(s) 266, 571, 923
BsgI GTGCAG 2 cut(s) 653, 922
BshFI GGCC 3 cut(s) 351, 890, 950
BsiHKAI GWGCWC 1 cut(s) 813
BsiHKCI CYCGRG 1 cut(s) 845
BsiSI CCGG 2 cut(s) 263, 955
BslFI GGGAC 1 cut(s) 464
BslI CCNNNNNNNGG 2 cut(s) 427, 448
BsmAI GTCTC 3 cut(s) 158, 363, 786
BsmBI CGTCTC 2 cut(s) 158, 363
BsmFI GGGAC 1 cut(s) 464
BsnI GGCC 3 cut(s) 351, 890, 950
Bso31I GGTCTC 1 cut(s) 786
BsoBI CYCGRG 1 cut(s) 845
Bsp1286I GDGCHC 1 cut(s) 813
Bsp143I GATC 5 cut(s) 354, 745, 817, 841, 957
BspACI CCGC 3 cut(s) 348, 716, 905
BspANI GGCC 3 cut(s) 351, 890, 950
BspCNI CTCAG 3 cut(s) 435, 823, 877
BspLI GGNNCC 1 cut(s) 267
BspMI ACCTGC 1 cut(s) 625
BspPI GGATC 2 cut(s) 849, 965
BspTI CTTAAG 1 cut(s) 467
BspTNI GGTCTC 1 cut(s) 786
BsrFI RCCGGY 1 cut(s) 262
BssAI RCCGGY 1 cut(s) 262
BssECI CCNNGG 2 cut(s) 78, 427
BssMI GATC 5 cut(s) 354, 745, 817, 841, 957
BssT1I CCWWGG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 428
Bst6I CTCTTC 2 cut(s) 119, 267
BstAFI CTTAAG 1 cut(s) 467
BstC8I GCNNGC 2 cut(s) 156, 755
BstDEI CTNAG 3 cut(s) 422, 831, 885
BstENI CCTNNNNNAGG 1 cut(s) 425
BstF5I GGATG 1 cut(s) 492
BstH2I RGCGCY 1 cut(s) 929
BstHHI GCGC 1 cut(s) 928
BstKTI GATC 5 cut(s) 357, 748, 820, 844, 960
BstMAI GTCTC 3 cut(s) 158, 363, 786
BstMBI GATC 5 cut(s) 354, 745, 817, 841, 957
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNI CCWGG 1 cut(s) 428
BstNSI RCATGY 1 cut(s) 757
BstSCI CCNGG 1 cut(s) 426
BstV1I GCAGC 3 cut(s) 266, 571, 923
BstV2I GAAGAC 1 cut(s) 152
BstX2I RGATCY 2 cut(s) 841, 957
BstYI RGATCY 2 cut(s) 841, 957
BsuRI GGCC 3 cut(s) 351, 890, 950
BtsCI GGATG 1 cut(s) 492
BveI ACCTGC 1 cut(s) 625
Cac8I GCNNGC 2 cut(s) 156, 755
CfoI GCGC 1 cut(s) 928
Cfr10I RCCGGY 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 23
CviAII CATG 3 cut(s) 91, 315, 754
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 3 cut(s) 422, 831, 885
DpnI GATC 5 cut(s) 356, 747, 819, 843, 959
DpnII GATC 5 cut(s) 354, 745, 817, 841, 957
Eam1104I CTCTTC 2 cut(s) 119, 267
EarI CTCTTC 2 cut(s) 119, 267
EciI GGCGGA 2 cut(s) 731, 920
Eco130I CCWWGG 1 cut(s) 78
Eco147I AGGCCT 1 cut(s) 950
Eco31I GGTCTC 1 cut(s) 786
Eco47I GGWCC 1 cut(s) 188
Eco47III AGCGCT 1 cut(s) 927
Eco88I CYCGRG 1 cut(s) 845
EcoNI CCTNNNNNAGG 1 cut(s) 425
EcoRII CCWGG 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
Esp3I CGTCTC 2 cut(s) 158, 363
FaeI CATG 3 cut(s) 94, 318, 757
FaqI GGGAC 1 cut(s) 464
FatI CATG 3 cut(s) 90, 314, 753
FbaI TGATCA 2 cut(s) 745, 817
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 4 cut(s) 255, 349, 585, 937
FokI GGATG 1 cut(s) 499
Fsp4HI GCNGC 4 cut(s) 255, 349, 585, 937
FspBI CTAG 2 cut(s) 629, 982
GlaI GCGC 1 cut(s) 927
GluI GCNGC 4 cut(s) 255, 349, 585, 937
GsuI CTGGAG 1 cut(s) 252
HaeII RGCGCY 1 cut(s) 929
HaeIII GGCC 3 cut(s) 351, 890, 950
HapII CCGG 2 cut(s) 263, 955
HhaI GCGC 1 cut(s) 928
Hin1II CATG 3 cut(s) 94, 318, 757
Hin6I GCGC 1 cut(s) 926
HinP1I GCGC 1 cut(s) 926
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 3 cut(s) 29, 415, 493
HpaII CCGG 2 cut(s) 263, 955
HphI GGTGA 3 cut(s) 3, 252, 256
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 3 cut(s) 498, 750, 804
Hpy188III TCNNGA 3 cut(s) 269, 517, 845
Hpy8I GTNNAC 1 cut(s) 178
Hpy99I CGWCG 1 cut(s) 783
HpyAV CCTTC 5 cut(s) 514, 535, 607, 703, 862
HpyCH4IV ACGT 2 cut(s) 84, 500
HpyCH4V TGCA 4 cut(s) 158, 490, 634, 939
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 3 cut(s) 422, 831, 885
HpySE526I ACGT 2 cut(s) 84, 500
Hsp92II CATG 3 cut(s) 94, 318, 757
HspAI GCGC 1 cut(s) 926
Ksp22I TGATCA 2 cut(s) 745, 817
Kzo9I GATC 5 cut(s) 354, 745, 817, 841, 957
LmnI GCTCC 3 cut(s) 271, 318, 835
Lsp1109I GCAGC 3 cut(s) 266, 571, 923
LweI GCATC 3 cut(s) 40, 477, 571
MaeI CTAG 2 cut(s) 629, 982
MaeII ACGT 2 cut(s) 84, 500
MaeIII GTNAC 2 cut(s) 56, 527
MalI GATC 5 cut(s) 356, 747, 819, 843, 959
MboI GATC 5 cut(s) 354, 745, 817, 841, 957
MfeI CAATTG 1 cut(s) 931
MflI RGATCY 2 cut(s) 841, 957
MhlI GDGCHC 1 cut(s) 813
MluCI AATT 8 cut(s) 73, 395, 561, 599, 879, 898, 931, 976
MlyI GAGTC 1 cut(s) 424
MmeI TCCRAC 2 cut(s) 120, 309
MroXI GAANNNNTTC 1 cut(s) 545
MseI TTAA 2 cut(s) 468, 602
MspCI CTTAAG 1 cut(s) 467
MspI CCGG 2 cut(s) 263, 955
MspR9I CCNGG 1 cut(s) 428
MunI CAATTG 1 cut(s) 931
MvaI CCWGG 1 cut(s) 428
MwoI GCNNNNNNNGC 1 cut(s) 263
NdeII GATC 5 cut(s) 354, 745, 817, 841, 957
NlaIII CATG 3 cut(s) 94, 318, 757
NlaIV GGNNCC 1 cut(s) 267
NmuCI GTSAC 1 cut(s) 56
NspI RCATGY 1 cut(s) 757
PaeI GCATGC 1 cut(s) 757
PaeR7I CTCGAG 1 cut(s) 845
PaqCI CACCTGC 1 cut(s) 625
PceI AGGCCT 1 cut(s) 950
PdmI GAANNNNTTC 1 cut(s) 545
PfeI GAWTC 2 cut(s) 29, 493
PflFI GACNNNGTC 1 cut(s) 41
PkrI GCNGC 4 cut(s) 256, 350, 586, 938
PleI GAGTC 1 cut(s) 423
PpsI GAGTC 1 cut(s) 423
Psp6I CCWGG 1 cut(s) 426
PspGI CCWGG 1 cut(s) 426
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 188
PsuI RGATCY 2 cut(s) 841, 957
PsyI GACNNNGTC 1 cut(s) 41
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
SalI GTCGAC 1 cut(s) 176
SaqAI TTAA 2 cut(s) 468, 602
SatI GCNGC 4 cut(s) 255, 349, 585, 937
Sau3AI GATC 5 cut(s) 354, 745, 817, 841, 957
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 1 cut(s) 424
ScrFI CCNGG 1 cut(s) 428
SduI GDGCHC 1 cut(s) 813
SetI ASST 9 cut(s) 73, 87, 193, 259, 503, 546, 639, 714, 827
SfaNI GCATC 3 cut(s) 40, 477, 571
Sfr274I CTCGAG 1 cut(s) 845
SinI GGWCC 1 cut(s) 188
SlaI CTCGAG 1 cut(s) 845
SmlI CTYRAG 3 cut(s) 467, 845, 944
SmoI CTYRAG 3 cut(s) 467, 845, 944
SpeI ACTAGT 1 cut(s) 628
SphI GCATGC 1 cut(s) 757
Sse9I AATT 8 cut(s) 73, 395, 561, 599, 879, 898, 931, 976
SseBI AGGCCT 1 cut(s) 950
SsiI CCGC 3 cut(s) 348, 716, 905
SspMI CTAG 2 cut(s) 629, 982
StuI AGGCCT 1 cut(s) 950
StyD4I CCNGG 1 cut(s) 426
StyI CCWWGG 1 cut(s) 78
TaiI ACGT 2 cut(s) 87, 503
TaqI TCGA 3 cut(s) 177, 846, 896
TasI AATT 8 cut(s) 73, 395, 561, 599, 879, 898, 931, 976
TauI GCSGC 1 cut(s) 351
TfiI GAWTC 2 cut(s) 29, 493
Tru1I TTAA 2 cut(s) 468, 602
Tru9I TTAA 2 cut(s) 468, 602
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 3 cut(s) 254, 584, 936
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 3 cut(s) 417, 493, 554
TspGWI ACGGA 1 cut(s) 201
Tth111I GACNNNGTC 1 cut(s) 41
Vha464I CTTAAG 1 cut(s) 467
VpaK11BI GGWCC 1 cut(s) 188
XagI CCTNNNNNAGG 1 cut(s) 425
XapI RAATTY 3 cut(s) 395, 561, 898
XceI RCATGY 1 cut(s) 757
XcmI CCANNNNNNNNNTGG 1 cut(s) 898
XhoI CTCGAG 1 cut(s) 845
XmiI GTMKAC 1 cut(s) 177
XmnI GAANNNNTTC 1 cut(s) 545
XspI CTAG 2 cut(s) 629, 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.