RchiOBHm_Chr3g0495191

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000372
Physical Location & Seq
Reverse (-)
44583190 .. 44585567
2378 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45765

Sequence Viewer

Length: 213 bp
ATGGAAAGACTAACGTCTCTGGGAACGATGCCTTCGCCGCAATCTGCAACAAGTATGACCGATACGACATCTACAAGTAGAAAGACTCTAACGTTTCCGGTGCCGATGCCTTCGCTCGCCTCTACTCCGCCATTGAGTCCGACATTGAAGCTGCTCTTCAGAAAGTGGAGCTTGCTTCAAAAGAAAAAAGTATGGCATTTGCAGGTGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.83

Weight (kDa)

11.17

Isoelectric Point (pI)

68.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 193
Acc36I ACCTGC 1 cut(s) 193
AccB1I GGYRCC 1 cut(s) 100
AciI CCGC 2 cut(s) 38, 128
AclI AACGTT 1 cut(s) 92
AcuI CTGAAG 1 cut(s) 142
AgsI TTSAA 2 cut(s) 148, 179
AluBI AGCT 2 cut(s) 151, 171
AluI AGCT 2 cut(s) 151, 171
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 21
ApeKI GCWGC 1 cut(s) 151
BanI GGYRCC 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 21
BfuAI ACCTGC 1 cut(s) 193
BisI GCNGC 2 cut(s) 38, 152
BlsI GCNGC 2 cut(s) 39, 153
BmiI GGNNCC 1 cut(s) 102
BmsI GCATC 2 cut(s) 18, 96
BoxI GACNNNNGTC 1 cut(s) 13
BsaWI WCCGGW 1 cut(s) 97
BseXI GCAGC 1 cut(s) 138
BshNI GGYRCC 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 210
BsiSI CCGG 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 21
BsmBI CGTCTC 1 cut(s) 21
Bsp1286I GDGCHC 1 cut(s) 210
BspACI CCGC 2 cut(s) 38, 128
BspLI GGNNCC 1 cut(s) 102
BspMI ACCTGC 1 cut(s) 193
BspQI GCTCTTC 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 161
BstC8I GCNNGC 2 cut(s) 117, 173
BstMAI GTCTC 1 cut(s) 21
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstPAI GACNNNNGTC 1 cut(s) 13
BstV1I GCAGC 1 cut(s) 138
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 2 cut(s) 117, 173
CviJI RGCY 2 cut(s) 151, 171
CviKI_1 RGCY 2 cut(s) 151, 171
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
EciI GGCGGA 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 142
Esp3I CGTCTC 1 cut(s) 21
FaiI YATR 2 cut(s) 56, 193
FalI AAGNNNNNCTT 4 cut(s) 140, 172, 155, 187
Fnu4HI GCNGC 2 cut(s) 38, 152
Fsp4HI GCNGC 2 cut(s) 38, 152
GluI GCNGC 2 cut(s) 38, 152
HapII CCGG 1 cut(s) 98
HinfI GANTC 2 cut(s) 85, 136
HpaII CCGG 1 cut(s) 98
Hpy188I TCNGA 3 cut(s) 141, 161, 212
HpyAV CCTTC 2 cut(s) 42, 120
HpyCH4IV ACGT 2 cut(s) 14, 92
HpyCH4V TGCA 2 cut(s) 47, 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpySE526I ACGT 2 cut(s) 14, 92
LguI GCTCTTC 1 cut(s) 161
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 3 cut(s) 5, 111, 188
Lsp1109I GCAGC 1 cut(s) 138
LweI GCATC 2 cut(s) 18, 96
MaeII ACGT 2 cut(s) 14, 92
MboII GAAGA 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 210
MlyI GAGTC 2 cut(s) 79, 145
MmeI TCCRAC 1 cut(s) 164
MnlI CCTC 1 cut(s) 130
MspI CCGG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 37
NlaIV GGNNCC 1 cut(s) 102
PaqCI CACCTGC 1 cut(s) 193
PciSI GCTCTTC 1 cut(s) 161
PkrI GCNGC 2 cut(s) 39, 153
PleI GAGTC 2 cut(s) 79, 144
PpsI GAGTC 2 cut(s) 79, 144
PshAI GACNNNNGTC 1 cut(s) 13
Psp1406I AACGTT 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 102
SapI GCTCTTC 1 cut(s) 161
SatI GCNGC 2 cut(s) 38, 152
SchI GAGTC 2 cut(s) 79, 145
SduI GDGCHC 1 cut(s) 210
SetI ASST 5 cut(s) 17, 95, 153, 173, 207
SfaNI GCATC 2 cut(s) 18, 96
SgeI CNNG 6 cut(s) 32, 63, 87, 110, 128, 184
SsiI CCGC 2 cut(s) 38, 128
TaiI ACGT 2 cut(s) 17, 95
TaqII GACCGA 1 cut(s) 74
TauI GCSGC 1 cut(s) 40
TseI GCWGC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.