RLG00000016235

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000372
Physical Location & Seq
Forward (+)
4938784 .. 4940238
1455 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016235

Sequence Viewer

Length: 342 bp
ATGGCGGTTGAACCAGAGATTGGAGATAAAATTACTCAGAGAAAAAAGTCACGGTTCTTTTCTCTTTCGCTCTCTCGAGATCTCAAACAATTTTTATCGGTTTCTTCTGCCGTCTTCTGCCGAAACACGTCGTCGTCGGCGAGAATGGAAGGACTAACGTCTCCGGGAACGATGCCTTCGCCGCGATCTGCAACAAGTATGACCGATACGACATCTACAAGTAGAAAGACTCTAACGTCTCCGGTGCCGATGCCTTCGCTCGCCTCTACTACGCCATCGAGTCCGACATTGAAGCTGCTCTTCAGGCTCGGTCTCTTTCTCAGTCTCTCTGGATTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.16

Weight (kDa)

10.94

Isoelectric Point (pI)

57.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 235
AccB1I GGYRCC 1 cut(s) 244
AccB7I CCANNNNNTGG 1 cut(s) 20
AccII CGCG 1 cut(s) 184
AciI CCGC 2 cut(s) 5, 182
AcuI CTGAAG 1 cut(s) 286
AfiI CCNNNNNNNGG 1 cut(s) 20
AflIII ACRYGT 1 cut(s) 126
AgsI TTSAA 2 cut(s) 11, 292
AjiI CACGTC 1 cut(s) 129
AjuI GAANNNNNNNTTGG 1 cut(s) 35
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
Alw26I GTCTC 4 cut(s) 165, 243, 317, 329
Ama87I CYCGRG 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 295
AsuC2I CCSGG 1 cut(s) 165
AvaI CYCGRG 1 cut(s) 75
BanI GGYRCC 1 cut(s) 244
BbsI GAAGAC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 282
BccI CCATC 1 cut(s) 283
BceAI ACGGC 1 cut(s) 95
BcnI CCSGG 1 cut(s) 165
BcoDI GTCTC 4 cut(s) 165, 243, 317, 329
BglII AGATCT 1 cut(s) 79
BisI GCNGC 2 cut(s) 182, 296
BlsI GCNGC 2 cut(s) 183, 297
Bme1390I CCNGG 1 cut(s) 165
BmeT110I CYCGRG 1 cut(s) 75
BmgBI CACGTC 1 cut(s) 129
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 2 cut(s) 162, 240
BoxI GACNNNNGTC 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 165
BsaI GGTCTC 1 cut(s) 317
BsaWI WCCGGW 1 cut(s) 241
Bsc4I CCNNNNNNNGG 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMII CTCAG 2 cut(s) 50, 334
BseXI GCAGC 1 cut(s) 282
Bsh1236I CGCG 1 cut(s) 184
BshNI GGYRCC 1 cut(s) 244
BsiHKCI CYCGRG 1 cut(s) 75
BsiSI CCGG 2 cut(s) 164, 242
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 4 cut(s) 165, 243, 317, 329
BsmBI CGTCTC 2 cut(s) 165, 243
Bso31I GGTCTC 1 cut(s) 317
BsoBI CYCGRG 1 cut(s) 75
Bsp143I GATC 2 cut(s) 79, 185
BspACI CCGC 2 cut(s) 5, 182
BspCNI CTCAG 2 cut(s) 49, 333
BspFNI CGCG 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 246
BspQI GCTCTTC 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 244
BspTNI GGTCTC 1 cut(s) 317
BssMI GATC 2 cut(s) 79, 185
Bst4CI ACNGT 1 cut(s) 54
Bst6I CTCTTC 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 2 cut(s) 36, 320
BstFNI CGCG 1 cut(s) 184
BstKTI GATC 2 cut(s) 82, 188
BstMAI GTCTC 4 cut(s) 165, 243, 317, 329
BstMBI GATC 2 cut(s) 79, 185
BstMWI GCNNNNNNNGC 2 cut(s) 181, 304
BstPAI GACNNNNGTC 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 163
BstUI CGCG 1 cut(s) 184
BstV1I GCAGC 1 cut(s) 282
BstV2I GAAGAC 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BtrI CACGTC 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 261
CviJI RGCY 2 cut(s) 295, 307
CviKI_1 RGCY 2 cut(s) 295, 307
DdeI CTNAG 2 cut(s) 36, 320
DpnI GATC 2 cut(s) 81, 187
DpnII GATC 2 cut(s) 79, 185
DrdI GACNNNNNNGTC 1 cut(s) 235
DseDI GACNNNNNNGTC 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 305
EarI CTCTTC 1 cut(s) 305
Eco31I GGTCTC 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 286
Eco88I CYCGRG 1 cut(s) 75
Esp3I CGTCTC 2 cut(s) 165, 243
FaiI YATR 1 cut(s) 200
FalI AAGNNNNNCTT 2 cut(s) 284, 316
Fnu4HI GCNGC 2 cut(s) 182, 296
Fsp4HI GCNGC 2 cut(s) 182, 296
GluI GCNGC 2 cut(s) 182, 296
HapII CCGG 2 cut(s) 164, 242
HinfI GANTC 3 cut(s) 229, 280, 333
HpaII CCGG 2 cut(s) 164, 242
Hpy188I TCNGA 2 cut(s) 39, 285
Hpy188III TCNNGA 3 cut(s) 75, 77, 330
Hpy99I CGWCG 3 cut(s) 133, 136, 139
HpyAV CCTTC 3 cut(s) 143, 186, 264
HpyCH4III ACNGT 1 cut(s) 54
HpyCH4IV ACGT 3 cut(s) 128, 158, 236
HpyCH4V TGCA 1 cut(s) 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 181, 304
HpyF3I CTNAG 2 cut(s) 36, 320
HpySE526I ACGT 3 cut(s) 128, 158, 236
Kzo9I GATC 2 cut(s) 79, 185
LguI GCTCTTC 1 cut(s) 305
LpnPI CCDG 5 cut(s) 27, 177, 255, 289, 315
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 2 cut(s) 162, 240
MaeII ACGT 3 cut(s) 128, 158, 236
MaeIII GTNAC 1 cut(s) 48
MalI GATC 2 cut(s) 81, 187
MboI GATC 2 cut(s) 79, 185
MboII GAAGA 3 cut(s) 96, 106, 292
MflI RGATCY 1 cut(s) 79
MluCI AATT 2 cut(s) 30, 89
MlyI GAGTC 2 cut(s) 223, 289
MmeI TCCRAC 1 cut(s) 308
MnlI CCTC 1 cut(s) 274
MseI TTAA 1 cut(s) 340
MspI CCGG 2 cut(s) 164, 242
MspR9I CCNGG 1 cut(s) 165
MvnI CGCG 1 cut(s) 184
MwoI GCNNNNNNNGC 2 cut(s) 181, 304
NciI CCSGG 1 cut(s) 165
NdeII GATC 2 cut(s) 79, 185
NlaIV GGNNCC 1 cut(s) 246
NmuCI GTSAC 1 cut(s) 48
PaeR7I CTCGAG 1 cut(s) 75
PciSI GCTCTTC 1 cut(s) 305
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PfeI GAWTC 1 cut(s) 333
PflMI CCANNNNNTGG 1 cut(s) 20
PfoI TCCNGGA 1 cut(s) 163
PkrI GCNGC 2 cut(s) 183, 297
PleI GAGTC 2 cut(s) 223, 288
PpsI GAGTC 2 cut(s) 223, 288
PshAI GACNNNNGTC 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 246
PsuI RGATCY 1 cut(s) 79
SapI GCTCTTC 1 cut(s) 305
SaqAI TTAA 1 cut(s) 340
SatI GCNGC 2 cut(s) 182, 296
Sau3AI GATC 2 cut(s) 79, 185
SchI GAGTC 2 cut(s) 223, 289
ScrFI CCNGG 1 cut(s) 165
SetI ASST 4 cut(s) 131, 161, 239, 297
SfaNI GCATC 2 cut(s) 162, 240
Sfr274I CTCGAG 1 cut(s) 75
SlaI CTCGAG 1 cut(s) 75
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
Sse9I AATT 2 cut(s) 30, 89
SsiI CCGC 2 cut(s) 5, 182
StyD4I CCNGG 1 cut(s) 163
TaaI ACNGT 1 cut(s) 54
TaiI ACGT 3 cut(s) 131, 161, 239
TaqI TCGA 2 cut(s) 76, 278
TaqII GACCGA 2 cut(s) 218, 299
TasI AATT 2 cut(s) 30, 89
TauI GCSGC 1 cut(s) 184
TfiI GAWTC 1 cut(s) 333
Tru1I TTAA 1 cut(s) 340
Tru9I TTAA 1 cut(s) 340
TseFI GTSAC 1 cut(s) 48
TseI GCWGC 1 cut(s) 295
Tsp45I GTSAC 1 cut(s) 48
Van91I CCANNNNNTGG 1 cut(s) 20
XhoI CTCGAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.