Rorug01G0357800

Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic mitochondrial-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
47405547 .. 47407336
1790 bp
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UTR
Exon/CDS
Intron
Rorug01G0357800.1

Sequence Viewer

Length: 459 bp
ATGGCCCCTAAAGTTGACGGTAAGAAGGCTGATCCCAAGGCTCAGGCCTTGAAGACTGCCAAGGCTGTGAAGTCAGGGCCAACCTTCAAGAAGAAGGCTAAGAAGATCAGGACATCAGTCACATTCCACAGGCCAAGGACATTGAAGAAGGAAAGGAACCCCAAGTACCCCCGCATTAGCGCACCACCAAGAAACAAGTTGGACCATTACCAGATCCTCAAGTATCCATTGACCACTGAGTCTGCAATGAAGAAGATTGAGGACAACAATACCCTTGTTTTCATTGTTGACATCCGTGCTGATAAGAAGAAAATTAAGGATGCAGTGAAGAAGATGTACGACATTCAGACCAAGAAAGTGAATACTCTGATCAGGCCTGATGGAACGAAGAAGGCATATGTTAGGTTGACACCTGATTACGATGCATTGGATGTGGCTAACAAGATCGGCATCATATAA

Protein Analysis

152

Amino Acids

17.32

Weight (kDa)

10.24

Isoelectric Point (pI)

24.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L23eN PF03939 12 - 62 3.3e-19 Ribosomal protein L23, N-terminal domain
Ribosomal_L23 PF00276 71 - 132 7.2e-14 Ribosomal protein L23
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 238
AciI CCGC 1 cut(s) 172
AclWI GGATC 2 cut(s) 26, 208
AfaI GTAC 2 cut(s) 167, 338
AgsI TTSAA 3 cut(s) 52, 88, 145
AlwI GGATC 2 cut(s) 26, 208
AoxI GGCC 5 cut(s) 3, 45, 77, 131, 374
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 3 cut(s) 4, 77, 202
AvaII GGWCC 1 cut(s) 202
BarI GAAGNNNNNNTAC 2 cut(s) 320, 352
BbsI GAAGAC 1 cut(s) 59
BccI CCATC 1 cut(s) 374
BciVI GTATCC 1 cut(s) 234
BclI TGATCA 1 cut(s) 369
BfuI GTATCC 1 cut(s) 234
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 3 cut(s) 4, 77, 202
BmiI GGNNCC 2 cut(s) 6, 158
BmsI GCATC 2 cut(s) 310, 412
BoxI GACNNNNGTC 1 cut(s) 116
BpiI GAAGAC 1 cut(s) 59
Bpu10I CCTNAGC 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 203
BsaBI GATNNNNATC 1 cut(s) 449
BsaJI CCNNGG 3 cut(s) 36, 60, 134
Bse3DI GCAATG 1 cut(s) 252
Bse8I GATNNNNATC 1 cut(s) 449
BseDI CCNNGG 3 cut(s) 36, 60, 134
BseGI GGATG 3 cut(s) 291, 325, 436
BseJI GATNNNNATC 1 cut(s) 449
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 2 cut(s) 56, 228
BshFI GGCC 5 cut(s) 5, 47, 79, 133, 376
BsnI GGCC 5 cut(s) 5, 47, 79, 133, 376
Bsp143I GATC 5 cut(s) 31, 105, 213, 369, 444
BspACI CCGC 1 cut(s) 172
BspANI GGCC 5 cut(s) 5, 47, 79, 133, 376
BspCNI CTCAG 2 cut(s) 55, 229
BspLI GGNNCC 2 cut(s) 6, 158
BspPI GGATC 2 cut(s) 26, 208
BsrDI GCAATG 1 cut(s) 252
BssECI CCNNGG 3 cut(s) 36, 60, 134
BssMI GATC 5 cut(s) 31, 105, 213, 369, 444
BssT1I CCWWGG 3 cut(s) 36, 60, 134
Bst4CI ACNGT 1 cut(s) 20
BstDEI CTNAG 3 cut(s) 42, 99, 237
BstF5I GGATG 3 cut(s) 291, 325, 436
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 5 cut(s) 34, 108, 216, 372, 447
BstMBI GATC 5 cut(s) 31, 105, 213, 369, 444
BstPAI GACNNNNGTC 1 cut(s) 116
BstV2I GAAGAC 1 cut(s) 59
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BsuI GTATCC 1 cut(s) 234
BsuRI GGCC 5 cut(s) 5, 47, 79, 133, 376
BtsCI GGATG 3 cut(s) 291, 325, 436
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 2 cut(s) 234, 330
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 3 cut(s) 4, 77, 202
Csp6I GTAC 2 cut(s) 166, 337
CviQI GTAC 2 cut(s) 166, 337
DdeI CTNAG 3 cut(s) 42, 99, 237
DpnI GATC 5 cut(s) 33, 107, 215, 371, 446
DpnII GATC 5 cut(s) 31, 105, 213, 369, 444
DrdI GACNNNNNNGTC 1 cut(s) 238
DseDI GACNNNNNNGTC 1 cut(s) 238
Eco130I CCWWGG 3 cut(s) 36, 60, 134
Eco147I AGGCCT 2 cut(s) 47, 376
Eco47I GGWCC 1 cut(s) 202
EcoT14I CCWWGG 3 cut(s) 36, 60, 134
EcoT22I ATGCAT 1 cut(s) 427
ErhI CCWWGG 3 cut(s) 36, 60, 134
FaiI YATR 4 cut(s) 397, 399, 455, 457
FauI CCCGC 1 cut(s) 179
FauNDI CATATG 1 cut(s) 397
FbaI TGATCA 1 cut(s) 369
FokI GGATG 3 cut(s) 278, 332, 443
GlaI GCGC 1 cut(s) 181
HaeIII GGCC 5 cut(s) 5, 47, 79, 133, 376
HhaI GCGC 1 cut(s) 182
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HincII GTYRAC 3 cut(s) 16, 289, 408
HindII GTYRAC 3 cut(s) 16, 289, 408
HinfI GANTC 1 cut(s) 239
Hpy166II GTNNAC 3 cut(s) 16, 289, 408
Hpy188I TCNGA 2 cut(s) 348, 369
Hpy188III TCNNGA 2 cut(s) 88, 109
Hpy8I GTNNAC 3 cut(s) 16, 289, 408
HpyAV CCTTC 5 cut(s) 19, 88, 94, 142, 385
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4V TGCA 3 cut(s) 245, 323, 425
HpyF3I CTNAG 3 cut(s) 42, 99, 237
HspAI GCGC 1 cut(s) 180
Ksp22I TGATCA 1 cut(s) 369
Kzo9I GATC 5 cut(s) 31, 105, 213, 369, 444
LpnPI CCDG 8 cut(s) 29, 60, 94, 115, 224, 358, 390, 426
LweI GCATC 2 cut(s) 310, 412
MaeIII GTNAC 1 cut(s) 118
MalI GATC 5 cut(s) 33, 107, 215, 371, 446
MboI GATC 5 cut(s) 31, 105, 213, 369, 444
MflI RGATCY 1 cut(s) 213
MluCI AATT 1 cut(s) 312
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 2 cut(s) 227, 253
Mph1103I ATGCAT 1 cut(s) 427
MseI TTAA 1 cut(s) 315
NdeI CATATG 1 cut(s) 397
NdeII GATC 5 cut(s) 31, 105, 213, 369, 444
NlaIV GGNNCC 2 cut(s) 6, 158
NmuCI GTSAC 1 cut(s) 118
NsiI ATGCAT 1 cut(s) 427
PceI AGGCCT 2 cut(s) 47, 376
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PshAI GACNNNNGTC 1 cut(s) 116
PspN4I GGNNCC 2 cut(s) 6, 158
PspPI GGNCC 3 cut(s) 4, 77, 202
PsrI GAACNNNNNNTAC 2 cut(s) 149, 181
PsuI RGATCY 1 cut(s) 213
RsaI GTAC 2 cut(s) 167, 338
RsaNI GTAC 2 cut(s) 166, 337
SaqAI TTAA 1 cut(s) 315
Sau3AI GATC 5 cut(s) 31, 105, 213, 369, 444
Sau96I GGNCC 3 cut(s) 4, 77, 202
SchI GAGTC 1 cut(s) 248
SetI ASST 3 cut(s) 86, 407, 415
SfaNI GCATC 2 cut(s) 310, 412
SinI GGWCC 1 cut(s) 202
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 1 cut(s) 312
SseBI AGGCCT 2 cut(s) 47, 376
SsiI CCGC 1 cut(s) 172
StuI AGGCCT 2 cut(s) 47, 376
StyI CCWWGG 3 cut(s) 36, 60, 134
TaaI ACNGT 1 cut(s) 20
TasI AATT 1 cut(s) 312
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 2 cut(s) 241, 330
TseFI GTSAC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 2 cut(s) 263, 271
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 2 cut(s) 241, 330
VpaK11BI GGWCC 1 cut(s) 202
Zsp2I ATGCAT 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.