Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000372

Physical Location & Seq

Genomic Coordinates Reverse (-)

16315299 .. 16316349

Gene Structure 1051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032548

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAATGCTACGGTCTCTGGGAACTGCTCCATTATTTGCAGCTTGGCGTCTCGGTACTCGAAGAGGAAGAGCAATAGTGTACCAAATGATGCACTAGAGCATGATGACCTGGACCATAAGGCTGCCGAACTCGGGGATTTGGTTGCTATTAGTGTCGATGATATTGTCACTTTTGGAGCCAAGCCATTATTTTTCCTTGATTACTTTGCTACAAGCCGCCTGGATGTTGATCTTGCTGAAAACGTAGAGGTTATCAGGGGAATTGTCGATGGTTGCCAACAATCTGACCATACTCTTTTAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

102

Amino Acids

10.91

Weight (kDa)

4.5

Isoelectric Point (pI)

14.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS	PF00586	46 - 101	5.7e-08	AIR synthase related protein, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000372)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g09000
rosa_chinensis	RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata	RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora	Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa	Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha	Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana	Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	217
AcyI	GRCGYC	1 cut(s)	47
AfaI	GTAC	2 cut(s)	56, 81
AfiI	CCNNNNNNNGG	1 cut(s)	132
AjnI	CCWGG	2 cut(s)	108, 219
AluBI	AGCT	1 cut(s)	42
AluI	AGCT	1 cut(s)	42
Alw26I	GTCTC	2 cut(s)	19, 54
Ama87I	CYCGRG	1 cut(s)	131
ApeKI	GCWGC	2 cut(s)	39, 122
AspS9I	GGNCC	1 cut(s)	112
AvaI	CYCGRG	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	112
BbvI	GCAGC	2 cut(s)	51, 109
BccI	CCATC	1 cut(s)	263
BciT130I	CCWGG	2 cut(s)	110, 221
BcoDI	GTCTC	2 cut(s)	19, 54
BfaI	CTAG	1 cut(s)	95
BisI	GCNGC	3 cut(s)	40, 123, 217
BlsI	GCNGC	3 cut(s)	41, 124, 218
Bme1390I	CCNGG	2 cut(s)	110, 221
Bme18I	GGWCC	1 cut(s)	112
BmeT110I	CYCGRG	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	2 cut(s)	110, 221
BmsI	GCATC	1 cut(s)	79
BsaBI	GATNNNNATC	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	2 cut(s)	110, 221
BseGI	GGATG	1 cut(s)	229
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseXI	GCAGC	2 cut(s)	51, 109
BsiHKCI	CYCGRG	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmAI	GTCTC	2 cut(s)	19, 54
BsmBI	CGTCTC	1 cut(s)	54
BsmI	GAATGC	1 cut(s)	10
Bso31I	GGTCTC	1 cut(s)	19
BsoBI	CYCGRG	1 cut(s)	131
Bsp143I	GATC	1 cut(s)	229
BspACI	CCGC	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	178
BspQI	GCTCTTC	1 cut(s)	62
BspTNI	GGTCTC	1 cut(s)	19
BssMI	GATC	1 cut(s)	229
BssNI	GRCGYC	1 cut(s)	47
Bst2UI	CCWGG	2 cut(s)	110, 221
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	2 cut(s)	56, 62
BstACI	GRCGYC	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	1 cut(s)	232
BstMAI	GTCTC	2 cut(s)	19, 54
BstMBI	GATC	1 cut(s)	229
BstNI	CCWGG	2 cut(s)	110, 221
BstSCI	CCNGG	2 cut(s)	108, 219
BstV1I	GCAGC	2 cut(s)	51, 109
BtsCI	GGATG	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	112
CseI	GACGC	1 cut(s)	36
Csp6I	GTAC	2 cut(s)	55, 80
CviAII	CATG	1 cut(s)	101
CviJI	RGCY	5 cut(s)	42, 122, 179, 184, 216
CviKI_1	RGCY	5 cut(s)	42, 122, 179, 184, 216
CviQI	GTAC	2 cut(s)	55, 80
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
Eam1104I	CTCTTC	2 cut(s)	56, 62
EarI	CTCTTC	2 cut(s)	56, 62
Eco31I	GGTCTC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	112
Eco88I	CYCGRG	1 cut(s)	131
EcoRII	CCWGG	2 cut(s)	108, 219
Esp3I	CGTCTC	1 cut(s)	54
FaeI	CATG	1 cut(s)	104
FaiI	YATR	3 cut(s)	102, 117, 291
FatI	CATG	1 cut(s)	100
Fnu4HI	GCNGC	3 cut(s)	40, 123, 217
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	3 cut(s)	40, 123, 217
FspBI	CTAG	1 cut(s)	95
GluI	GCNGC	3 cut(s)	40, 123, 217
HgaI	GACGC	1 cut(s)	36
Hin1I	GRCGYC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	104
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188I	TCNGA	1 cut(s)	286
Hpy8I	GTNNAC	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	2 cut(s)	39, 92
HpySE526I	ACGT	1 cut(s)	243
Hsp92I	GRCGYC	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	104
Kzo9I	GATC	1 cut(s)	229
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	2 cut(s)	32, 176
LpnPI	CCDG	6 cut(s)	3, 95, 122, 206, 233, 241
Lsp1109I	GCAGC	2 cut(s)	51, 109
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	2 cut(s)	73, 79
MluCI	AATT	1 cut(s)	261
MnlI	CCTC	2 cut(s)	57, 241
MspR9I	CCNGG	2 cut(s)	110, 221
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	2 cut(s)	110, 221
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	166
PciSI	GCTCTTC	1 cut(s)	62
PctI	GAATGC	1 cut(s)	10
PkrI	GCNGC	3 cut(s)	41, 124, 218
Psp6I	CCWGG	2 cut(s)	108, 219
PspGI	CCWGG	2 cut(s)	108, 219
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	112
RsaI	GTAC	2 cut(s)	56, 81
RsaNI	GTAC	2 cut(s)	55, 80
SapI	GCTCTTC	1 cut(s)	62
SatI	GCNGC	3 cut(s)	40, 123, 217
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	1 cut(s)	112
ScrFI	CCNGG	2 cut(s)	110, 221
SetI	ASST	5 cut(s)	44, 111, 246, 252, 304
SfaNI	GCATC	1 cut(s)	79
SinI	GGWCC	1 cut(s)	112
Sse9I	AATT	1 cut(s)	261
SsiI	CCGC	1 cut(s)	217
SspMI	CTAG	1 cut(s)	95
StyD4I	CCNGG	2 cut(s)	108, 219
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	3 cut(s)	59, 156, 267
TasI	AATT	1 cut(s)	261
TauI	GCSGC	1 cut(s)	219
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	2 cut(s)	39, 122
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	112
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.