Rh7CG251500

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000372
Physical Location & Seq
Reverse (-)
24115765 .. 24147893
32129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG251500.1

Sequence Viewer

Length: 603 bp
ATGGAAAGAATGCGGCAGAGTGCTCTGGTTAATGATGGGGTTGAAGATCTTGCTGACTTTTCCTTCCAGACAACGCCTATGTATATAGATGTGGATGATGGGAGAACTAAGGTGTATGATATGCAATTTGAGCTCAATGAAATAGAAGCAAGGAGAGAGCAATATCCTTCAACAATATCCTTCCTTAACCTGTTAAATGTTCTTATATCTGAAGAAAGAGACTTAAGTGATAGAGGGCGCAGGATGTTGAGTCTGTATGACATCAGTGAAGAGGATATTGATGGTGTCATTGATCAATCTCAGCTTTCAACAGTAACACACTCTTCACTCCAGATGCAGCTACCAATTCTAGAATTGCTAAAACTGTTTTACTGGTTTGGCTTGCAGCTAGCATATCTGCCTGATAAAAAACGGGAATATGTGATTGATGATGATGCTCTAAGTCATGCTTCCGAGCTTTCAGTGGAAGGAAGAGATGATATCACTAATCTTGATGAGTTGGTCAAGGATTACAAAAGAAACAGAAGACGTGGAATGCTCGTATGGCTTAAACTGAAATCCAAAGTTGGAGATAGGCTACACACATCAATGGATGTCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Nup192

Protein Analysis

200

Amino Acids

23.35

Weight (kDa)

4.67

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 13
AcuI CTGAAG 1 cut(s) 231
AflII CTTAAG 1 cut(s) 223
AgsI TTSAA 3 cut(s) 44, 171, 309
AjiI CACGTC 1 cut(s) 530
AluBI AGCT 5 cut(s) 133, 304, 340, 388, 457
AluI AGCT 5 cut(s) 133, 304, 340, 388, 457
Alw21I GWGCWC 2 cut(s) 25, 135
Alw26I GTCTC 1 cut(s) 213
ApeKI GCWGC 2 cut(s) 337, 385
AspLEI GCGC 1 cut(s) 240
AsuNHI GCTAGC 1 cut(s) 388
BanII GRGCYC 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 532
Bbv12I GWGCWC 2 cut(s) 25, 135
BbvI GCAGC 2 cut(s) 349, 397
BccI CCATC 3 cut(s) 29, 92, 275
BclI TGATCA 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 213
BfaI CTAG 2 cut(s) 350, 389
BfrI CTTAAG 1 cut(s) 223
BglII AGATCT 1 cut(s) 46
BisI GCNGC 3 cut(s) 14, 338, 386
BlsI GCNGC 3 cut(s) 15, 339, 387
BmgBI CACGTC 1 cut(s) 530
BmsI GCATC 2 cut(s) 324, 424
BmtI GCTAGC 1 cut(s) 392
BpiI GAAGAC 1 cut(s) 532
BpmI CTGGAG 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 377
BseGI GGATG 3 cut(s) 100, 249, 598
BseMII CTCAG 1 cut(s) 314
BseNI ACTGG 1 cut(s) 377
BseXI GCAGC 2 cut(s) 349, 397
BsiHKAI GWGCWC 2 cut(s) 25, 135
BsmAI GTCTC 1 cut(s) 213
BsmI GAATGC 2 cut(s) 15, 540
Bsp1286I GDGCHC 2 cut(s) 25, 135
Bsp143I GATC 2 cut(s) 46, 292
BspACI CCGC 1 cut(s) 13
BspCNI CTCAG 1 cut(s) 313
BspOI GCTAGC 1 cut(s) 392
BspTI CTTAAG 1 cut(s) 223
BsrI ACTGG 1 cut(s) 377
BssMI GATC 2 cut(s) 46, 292
Bst4CI ACNGT 2 cut(s) 313, 366
Bst6I CTCTTC 3 cut(s) 264, 328, 466
BstAFI CTTAAG 1 cut(s) 223
BstC8I GCNNGC 2 cut(s) 383, 390
BstDEI CTNAG 3 cut(s) 108, 300, 440
BstF5I GGATG 3 cut(s) 100, 249, 598
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 2 cut(s) 49, 295
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 2 cut(s) 46, 292
BstMWI GCNNNNNNNGC 2 cut(s) 130, 544
BstV1I GCAGC 2 cut(s) 349, 397
BstV2I GAAGAC 1 cut(s) 532
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BtrI CACGTC 1 cut(s) 530
BtsCI GGATG 3 cut(s) 100, 249, 598
BtsIMutI CAGTG 2 cut(s) 271, 468
Cac8I GCNNGC 2 cut(s) 383, 390
CfoI GCGC 1 cut(s) 240
CviAII CATG 1 cut(s) 446
CviJI RGCY 8 cut(s) 133, 304, 340, 381, 388, 457, 547, 577
CviKI_1 RGCY 8 cut(s) 133, 304, 340, 381, 388, 457, 547, 577
DdeI CTNAG 3 cut(s) 108, 300, 440
DpnI GATC 2 cut(s) 48, 294
DpnII GATC 2 cut(s) 46, 292
Eam1104I CTCTTC 3 cut(s) 264, 328, 466
EarI CTCTTC 3 cut(s) 264, 328, 466
Ecl136II GAGCTC 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 135
Eco32I GATATC 1 cut(s) 481
Eco53kI GAGCTC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 231
EcoICRI GAGCTC 1 cut(s) 133
EcoRV GATATC 1 cut(s) 481
EcoT38I GRGCYC 1 cut(s) 135
FaeI CATG 1 cut(s) 449
FalI AAGNNNNNCTT 2 cut(s) 433, 465
FatI CATG 1 cut(s) 445
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 3 cut(s) 14, 338, 386
FokI GGATG 2 cut(s) 107, 256
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 3 cut(s) 14, 338, 386
FspBI CTAG 2 cut(s) 350, 389
GlaI GCGC 1 cut(s) 239
GluI GCNGC 3 cut(s) 14, 338, 386
GsuI CTGGAG 1 cut(s) 314
HhaI GCGC 1 cut(s) 240
Hin1II CATG 1 cut(s) 449
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HinfI GANTC 1 cut(s) 250
Hpy188I TCNGA 2 cut(s) 211, 454
Hpy188III TCNNGA 4 cut(s) 67, 331, 350, 491
HpyAV CCTTC 4 cut(s) 73, 177, 190, 461
HpyCH4III ACNGT 2 cut(s) 313, 366
HpyCH4IV ACGT 1 cut(s) 529
HpyCH4V TGCA 3 cut(s) 124, 337, 385
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 544
HpyF3I CTNAG 3 cut(s) 108, 300, 440
HpySE526I ACGT 1 cut(s) 529
Hsp92II CATG 1 cut(s) 449
HspAI GCGC 1 cut(s) 238
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 2 cut(s) 46, 292
LpnPI CCDG 7 cut(s) 11, 80, 203, 226, 344, 358, 414
Lsp1109I GCAGC 2 cut(s) 349, 397
LweI GCATC 2 cut(s) 324, 424
MaeI CTAG 2 cut(s) 350, 389
MaeII ACGT 1 cut(s) 529
MaeIII GTNAC 1 cut(s) 313
MalI GATC 2 cut(s) 48, 294
MboI GATC 2 cut(s) 46, 292
MboII GAAGA 6 cut(s) 56, 224, 281, 315, 483, 537
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 2 cut(s) 25, 135
MluCI AATT 3 cut(s) 125, 345, 353
MlyI GAGTC 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 547
MnlI CCTC 2 cut(s) 227, 265
MseI TTAA 5 cut(s) 30, 186, 194, 224, 549
MslI CAYNNNNRTG 1 cut(s) 587
MspCI CTTAAG 1 cut(s) 223
Mva1269I GAATGC 2 cut(s) 15, 540
MwoI GCNNNNNNNGC 2 cut(s) 130, 544
NdeII GATC 2 cut(s) 46, 292
NheI GCTAGC 1 cut(s) 388
NlaIII CATG 1 cut(s) 449
PctI GAATGC 2 cut(s) 15, 540
PkrI GCNGC 3 cut(s) 15, 339, 387
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 135
PsuI RGATCY 1 cut(s) 46
RseI CAYNNNNRTG 1 cut(s) 587
SacI GAGCTC 1 cut(s) 135
SaqAI TTAA 5 cut(s) 30, 186, 194, 224, 549
SatI GCNGC 3 cut(s) 14, 338, 386
Sau3AI GATC 2 cut(s) 46, 292
SchI GAGTC 1 cut(s) 259
SduI GDGCHC 2 cut(s) 25, 135
SetI ASST 8 cut(s) 114, 135, 192, 306, 342, 390, 459, 532
SfaNI GCATC 2 cut(s) 324, 424
SmiMI CAYNNNNRTG 1 cut(s) 587
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
Sse9I AATT 3 cut(s) 125, 345, 353
SsiI CCGC 1 cut(s) 13
SspMI CTAG 2 cut(s) 350, 389
SstI GAGCTC 1 cut(s) 135
TaaI ACNGT 2 cut(s) 313, 366
TaiI ACGT 1 cut(s) 532
TasI AATT 3 cut(s) 125, 345, 353
TauI GCSGC 1 cut(s) 16
Tru1I TTAA 5 cut(s) 30, 186, 194, 224, 549
Tru9I TTAA 5 cut(s) 30, 186, 194, 224, 549
TscAI CASTG 2 cut(s) 271, 468
TseI GCWGC 2 cut(s) 337, 385
TspDTI ATGAA 1 cut(s) 153
TspRI CASTG 2 cut(s) 271, 468
Vha464I CTTAAG 1 cut(s) 223
XbaI TCTAGA 1 cut(s) 349
XspI CTAG 2 cut(s) 350, 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.