Rroxscaffold_3G00218290

Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic mitochondrial-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
473047 .. 475277
2231 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00218290.1

Sequence Viewer

Length: 561 bp
ATGAAGGCTGCGGTCTCGGGAACTGCTCCATTATTAGCAGCTTGGCGTCCGGTTGCTATTAGTGTCGATGATATTGTCACTTTTAGAGCCAAGCCATTATTTTTCCTTGATTACTTTACTACAAGCCGCCTTGATGTTGATCTTGCTGAAAAGGTTATCAAGGGAATTGTCGATGAGGGTGAGTATGACCTCAATGGCTTTGCAGTTGTAATTGTGAACAAGGAATCGGTGATTGATGATAAGAATCTTGTGGCTGGAGATCTCTTCATCGACCTACCATCCACTGTTGAAAATGCTTTGTGCCTCTTTGTTTTGCTTTTGCTTGCACCGAAACAGGTGCTTGACATAATTAGCAAGGGAGGTGTGATGGGGGTAGCCCACATCACAGGAGGTGGAAGAGTAGAAGATGCTGAAATGAGACGAACTTTTAATATGGGTATTGGGATGGTTCTTGTTGTGAGTAAGGAGGCATCCCACCGAATCATTGAGGATGGAAATGGAGCTTACTGCATTGGTGAGGTTGTAACTGGTGAAGGAGTGAGTTATAAACGAAATATATAA

Protein Analysis

186

Amino Acids

20.02

Weight (kDa)

4.84

Isoelectric Point (pI)

26.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 546
AciI CCGC 2 cut(s) 11, 127
AcyI GRCGYC 1 cut(s) 46
AgsI TTSAA 1 cut(s) 290
AluBI AGCT 2 cut(s) 41, 503
AluI AGCT 2 cut(s) 41, 503
Alw26I GTCTC 2 cut(s) 19, 412
Ama87I CYCGRG 1 cut(s) 16
ApeKI GCWGC 2 cut(s) 8, 38
AsuHPI GGTGA 4 cut(s) 191, 241, 527, 542
AvaI CYCGRG 1 cut(s) 16
BbvI GCAGC 1 cut(s) 50
BccI CCATC 4 cut(s) 286, 361, 439, 485
BcgI CGANNNNNNTGC 2 cut(s) 319, 353
BcoDI GTCTC 2 cut(s) 19, 412
BglII AGATCT 1 cut(s) 259
BisI GCNGC 3 cut(s) 9, 39, 127
BlsI GCNGC 3 cut(s) 10, 40, 128
BmeT110I CYCGRG 1 cut(s) 16
BmsI GCATC 2 cut(s) 397, 479
BpmI CTGGAG 1 cut(s) 276
BsaBI GATNNNNATC 2 cut(s) 138, 243
BsaHI GRCGYC 1 cut(s) 46
BsaI GGTCTC 1 cut(s) 19
BsaWI WCCGGW 1 cut(s) 49
Bse1I ACTGG 1 cut(s) 532
Bse8I GATNNNNATC 2 cut(s) 138, 243
BseGI GGATG 4 cut(s) 278, 450, 470, 496
BseJI GATNNNNATC 2 cut(s) 138, 243
BseNI ACTGG 1 cut(s) 532
BseXI GCAGC 1 cut(s) 50
BsiHKCI CYCGRG 1 cut(s) 16
BsiSI CCGG 1 cut(s) 50
BsmAI GTCTC 2 cut(s) 19, 412
BsmBI CGTCTC 1 cut(s) 412
Bso31I GGTCTC 1 cut(s) 19
BsoBI CYCGRG 1 cut(s) 16
Bsp143I GATC 2 cut(s) 139, 259
BspACI CCGC 2 cut(s) 11, 127
BspTNI GGTCTC 1 cut(s) 19
BsrI ACTGG 1 cut(s) 532
BssMI GATC 2 cut(s) 139, 259
BssNI GRCGYC 1 cut(s) 46
Bst4CI ACNGT 1 cut(s) 286
Bst6I CTCTTC 2 cut(s) 269, 391
BstACI GRCGYC 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 324
BstF5I GGATG 4 cut(s) 278, 450, 470, 496
BstKTI GATC 2 cut(s) 142, 262
BstMAI GTCTC 2 cut(s) 19, 412
BstMBI GATC 2 cut(s) 139, 259
BstV1I GCAGC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BtsCI GGATG 4 cut(s) 278, 450, 470, 496
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 324
CseI GACGC 1 cut(s) 35
CviJI RGCY 9 cut(s) 8, 41, 89, 94, 126, 198, 254, 377, 503
CviKI_1 RGCY 9 cut(s) 8, 41, 89, 94, 126, 198, 254, 377, 503
DpnI GATC 2 cut(s) 141, 261
DpnII GATC 2 cut(s) 139, 259
Eam1104I CTCTTC 2 cut(s) 269, 391
EarI CTCTTC 2 cut(s) 269, 391
Eco31I GGTCTC 1 cut(s) 19
Eco88I CYCGRG 1 cut(s) 16
Esp3I CGTCTC 1 cut(s) 412
FaiI YATR 6 cut(s) 186, 347, 434, 546, 557, 559
Fnu4HI GCNGC 3 cut(s) 9, 39, 127
FokI GGATG 4 cut(s) 265, 457, 457, 503
Fsp4HI GCNGC 3 cut(s) 9, 39, 127
GluI GCNGC 3 cut(s) 9, 39, 127
GsuI CTGGAG 1 cut(s) 276
HapII CCGG 1 cut(s) 50
HgaI GACGC 1 cut(s) 35
Hin1I GRCGYC 1 cut(s) 46
HinfI GANTC 3 cut(s) 224, 244, 480
HpaII CCGG 1 cut(s) 50
HphI GGTGA 4 cut(s) 191, 241, 527, 542
Hpy166II GTNNAC 1 cut(s) 217
Hpy188III TCNNGA 1 cut(s) 18
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 527
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4V TGCA 3 cut(s) 203, 326, 510
Hsp92I GRCGYC 1 cut(s) 46
Kzo9I GATC 2 cut(s) 139, 259
LmnI GCTCC 2 cut(s) 31, 500
LpnPI CCDG 5 cut(s) 63, 240, 320, 372, 513
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 2 cut(s) 397, 479
MaeIII GTNAC 2 cut(s) 76, 523
MalI GATC 2 cut(s) 141, 261
MboI GATC 2 cut(s) 139, 259
MboII GAAGA 3 cut(s) 256, 408, 416
MflI RGATCY 1 cut(s) 259
MluCI AATT 3 cut(s) 165, 210, 348
MnlI CCTC 8 cut(s) 169, 200, 314, 353, 383, 460, 481, 511
MseI TTAA 1 cut(s) 429
MspI CCGG 1 cut(s) 50
NdeII GATC 2 cut(s) 139, 259
NmuCI GTSAC 1 cut(s) 76
PfeI GAWTC 3 cut(s) 224, 244, 480
PkrI GCNGC 3 cut(s) 10, 40, 128
PsiI TTATAA 1 cut(s) 546
PsuI RGATCY 1 cut(s) 259
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 3 cut(s) 9, 39, 127
Sau3AI GATC 2 cut(s) 139, 259
SetI ASST 9 cut(s) 43, 156, 192, 276, 339, 364, 394, 505, 522
SfaNI GCATC 2 cut(s) 397, 479
Sse9I AATT 3 cut(s) 165, 210, 348
SsiI CCGC 2 cut(s) 11, 127
TaaI ACNGT 1 cut(s) 286
TaqI TCGA 3 cut(s) 66, 171, 270
TasI AATT 3 cut(s) 165, 210, 348
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 3 cut(s) 224, 244, 480
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 2 cut(s) 8, 38
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 2 cut(s) 17, 256
TspRI CASTG 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.