Rh5AG463800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000372
Physical Location & Seq
Reverse (-)
79353232 .. 79361808
8577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG463800.1

Sequence Viewer

Length: 438 bp
ATGTCAGATTTCCTTTGTTTTTTTTACTTCAACAATAAAACCTGGGCTTACCTTGATGGTGAGGTCGAGAGGGAGAGCCCAGGAGATGGAGTTGTGCTTGGAGGCTCGTCGTCTCGCCGAGATCTTACCGGCCTCGAGAAGCACCGATCTCAACTGCAGGGCGCGATCAATGAGCTTGATCTGATCGGTGTCGGAGTCACGGGAGTCGAGGATCCACTCGAAGGAGAGATCGATGGTGAAGGGCGGCGAGTCAGAGAAGTCGAGGAAGGTCTCAAGGAGTCGCGGTCAAGGAGGTTGGGATGGGAAAGCGGTGAAGTAGTAATGGCTGAACGAGCTGATGAAGCCTCCTGTCCCAGGCATTATTCTTGTTCTCGTCCTGGATGTTTGGAAAATAAAAGTGATAAACAGGGGAACATTGCTGGACGGGCCGGAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

15.93

Weight (kDa)

4.87

Isoelectric Point (pI)

68.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 86
AccII CGCG 2 cut(s) 164, 283
AciI CCGC 3 cut(s) 244, 283, 309
AclWI GGATC 2 cut(s) 206, 219
AfiI CCNNNNNNNGG 3 cut(s) 86, 221, 354
AgsI TTSAA 1 cut(s) 31
AjnI CCWGG 4 cut(s) 41, 79, 353, 376
AluBI AGCT 2 cut(s) 175, 335
AluI AGCT 2 cut(s) 175, 335
Alw26I GTCTC 2 cut(s) 117, 275
AlwI GGATC 2 cut(s) 206, 219
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 2 cut(s) 130, 426
AspLEI GCGC 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 426
AsuHPI GGTGA 3 cut(s) 71, 248, 323
AvaI CYCGRG 1 cut(s) 134
BamHI GGATCC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 80
BccI CCATC 4 cut(s) 50, 80, 227, 294
BciT130I CCWGG 4 cut(s) 43, 81, 355, 378
BcoDI GTCTC 2 cut(s) 117, 275
BfaI CTAG 1 cut(s) 436
BfmI CTRYAG 1 cut(s) 155
BglII AGATCT 1 cut(s) 121
BisI GCNGC 1 cut(s) 245
BlsI GCNGC 1 cut(s) 246
Bme1390I CCNGG 4 cut(s) 43, 81, 355, 378
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 426
BmiI GGNNCC 2 cut(s) 213, 433
BmrFI CCNGG 4 cut(s) 43, 81, 355, 378
BpuEI CTTGAG 1 cut(s) 257
Bsa29I ATCGAT 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 3 cut(s) 42, 79, 353
BsaXI ACNNNNNCTCC 4 cut(s) 75, 105, 269, 299
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 221, 354
Bse118I RCCGGY 1 cut(s) 128
Bse3DI GCAATG 1 cut(s) 414
BseBI CCWGG 4 cut(s) 43, 81, 355, 378
BseCI ATCGAT 1 cut(s) 231
BseDI CCNNGG 3 cut(s) 42, 79, 353
BseGI GGATG 2 cut(s) 305, 386
BseLI CCNNNNNNNGG 3 cut(s) 86, 221, 354
BseMI GCAATG 1 cut(s) 414
Bsh1236I CGCG 2 cut(s) 164, 283
BshFI GGCC 2 cut(s) 132, 428
BshVI ATCGAT 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 2 cut(s) 129, 429
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 3 cut(s) 86, 221, 354
BsmAI GTCTC 2 cut(s) 117, 275
BsmBI CGTCTC 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 336
BsnI GGCC 2 cut(s) 132, 428
Bso31I GGTCTC 1 cut(s) 275
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 80
Bsp143I GATC 7 cut(s) 121, 146, 165, 178, 183, 211, 228
BspACI CCGC 3 cut(s) 244, 283, 309
BspANI GGCC 2 cut(s) 132, 428
BspDI ATCGAT 1 cut(s) 231
BspFNI CGCG 2 cut(s) 164, 283
BspLI GGNNCC 2 cut(s) 213, 433
BspMAI CTGCAG 1 cut(s) 159
BspPI GGATC 2 cut(s) 206, 219
BspTNI GGTCTC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 414
BsrFI RCCGGY 1 cut(s) 128
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 3 cut(s) 42, 79, 353
BssMI GATC 7 cut(s) 121, 146, 165, 178, 183, 211, 228
Bst2UI CCWGG 4 cut(s) 43, 81, 355, 378
BstENI CCTNNNNNAGG 1 cut(s) 352
BstF5I GGATG 2 cut(s) 305, 386
BstFNI CGCG 2 cut(s) 164, 283
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 7 cut(s) 124, 149, 168, 181, 186, 214, 231
BstMAI GTCTC 2 cut(s) 117, 275
BstMBI GATC 7 cut(s) 121, 146, 165, 178, 183, 211, 228
BstMWI GCNNNNNNNGC 3 cut(s) 332, 341, 425
BstNI CCWGG 4 cut(s) 43, 81, 355, 378
BstSCI CCNGG 4 cut(s) 41, 79, 353, 376
BstSFI CTRYAG 1 cut(s) 155
BstUI CGCG 2 cut(s) 164, 283
BstX2I RGATCY 2 cut(s) 121, 211
BstYI RGATCY 2 cut(s) 121, 211
Bsu15I ATCGAT 1 cut(s) 231
BsuRI GGCC 2 cut(s) 132, 428
BsuTUI ATCGAT 1 cut(s) 231
BtsCI GGATG 2 cut(s) 305, 386
CfoI GCGC 1 cut(s) 164
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 426
ClaI ATCGAT 1 cut(s) 231
CviJI RGCY 9 cut(s) 47, 78, 105, 132, 175, 326, 335, 344, 428
CviKI_1 RGCY 9 cut(s) 47, 78, 105, 132, 175, 326, 335, 344, 428
DpnI GATC 7 cut(s) 123, 148, 167, 180, 185, 213, 230
DpnII GATC 7 cut(s) 121, 146, 165, 178, 183, 211, 228
Eco24I GRGCYC 1 cut(s) 80
Eco31I GGTCTC 1 cut(s) 275
Eco88I CYCGRG 1 cut(s) 134
EcoNI CCTNNNNNAGG 1 cut(s) 352
EcoRII CCWGG 4 cut(s) 41, 79, 353, 376
EcoT38I GRGCYC 1 cut(s) 80
Esp3I CGTCTC 1 cut(s) 117
FaqI GGGAC 1 cut(s) 336
Fnu4HI GCNGC 1 cut(s) 245
FokI GGATG 2 cut(s) 312, 393
FriOI GRGCYC 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 245
FspBI CTAG 1 cut(s) 436
GlaI GCGC 1 cut(s) 163
GluI GCNGC 1 cut(s) 245
HaeIII GGCC 2 cut(s) 132, 428
HapII CCGG 2 cut(s) 129, 429
HhaI GCGC 1 cut(s) 164
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HinfI GANTC 4 cut(s) 195, 204, 249, 278
HpaII CCGG 2 cut(s) 129, 429
HphI GGTGA 3 cut(s) 71, 248, 323
Hpy188I TCNGA 4 cut(s) 7, 183, 194, 254
Hpy188III TCNNGA 2 cut(s) 67, 136
Hpy99I CGWCG 1 cut(s) 112
HpyAV CCTTC 3 cut(s) 215, 233, 260
HpyCH4V TGCA 1 cut(s) 157
HpyF10VI GCNNNNNNNGC 3 cut(s) 332, 341, 425
HspAI GCGC 1 cut(s) 162
Kzo9I GATC 7 cut(s) 121, 146, 165, 178, 183, 211, 228
MaeI CTAG 1 cut(s) 436
MaeIII GTNAC 1 cut(s) 196
MalI GATC 7 cut(s) 123, 148, 167, 180, 185, 213, 230
MboI GATC 7 cut(s) 121, 146, 165, 178, 183, 211, 228
MflI RGATCY 2 cut(s) 121, 211
MhlI GDGCHC 1 cut(s) 80
MlyI GAGTC 4 cut(s) 204, 213, 258, 287
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 8 cut(s) 55, 63, 95, 143, 202, 256, 285, 355
MspI CCGG 2 cut(s) 129, 429
MspR9I CCNGG 4 cut(s) 43, 81, 355, 378
MvaI CCWGG 4 cut(s) 43, 81, 355, 378
MvnI CGCG 2 cut(s) 164, 283
MwoI GCNNNNNNNGC 3 cut(s) 332, 341, 425
NdeII GATC 7 cut(s) 121, 146, 165, 178, 183, 211, 228
NlaIV GGNNCC 2 cut(s) 213, 433
NmeAIII GCCGAG 1 cut(s) 143
NmuCI GTSAC 1 cut(s) 196
PaeR7I CTCGAG 1 cut(s) 134
PflMI CCANNNNNTGG 1 cut(s) 86
PfoI TCCNGGA 1 cut(s) 376
PkrI GCNGC 1 cut(s) 246
PleI GAGTC 4 cut(s) 203, 212, 257, 286
PpsI GAGTC 4 cut(s) 203, 212, 257, 286
Psp6I CCWGG 4 cut(s) 41, 79, 353, 376
PspGI CCWGG 4 cut(s) 41, 79, 353, 376
PspN4I GGNNCC 2 cut(s) 213, 433
PspPI GGNCC 1 cut(s) 426
PstI CTGCAG 1 cut(s) 159
PsuI RGATCY 2 cut(s) 121, 211
SatI GCNGC 1 cut(s) 245
Sau3AI GATC 7 cut(s) 121, 146, 165, 178, 183, 211, 228
Sau96I GGNCC 1 cut(s) 426
SchI GAGTC 4 cut(s) 204, 213, 258, 287
ScrFI CCNGG 4 cut(s) 43, 81, 355, 378
SduI GDGCHC 1 cut(s) 80
SetI ASST 8 cut(s) 44, 54, 66, 177, 271, 296, 337, 437
SfcI CTRYAG 1 cut(s) 155
Sfr274I CTCGAG 1 cut(s) 134
SlaI CTCGAG 1 cut(s) 134
SmlI CTYRAG 2 cut(s) 134, 272
SmoI CTYRAG 2 cut(s) 134, 272
SsiI CCGC 3 cut(s) 244, 283, 309
SspMI CTAG 1 cut(s) 436
StyD4I CCNGG 4 cut(s) 41, 79, 353, 376
TaqI TCGA 6 cut(s) 66, 135, 207, 219, 231, 261
TauI GCSGC 1 cut(s) 247
TseFI GTSAC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 354
Van91I CCANNNNNTGG 1 cut(s) 86
XagI CCTNNNNNAGG 1 cut(s) 352
XhoI CTCGAG 1 cut(s) 134
XspI CTAG 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.