Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000372

Physical Location & Seq

Genomic Coordinates Reverse (-)

20783592 .. 20787071

Gene Structure 3480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00300430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCTGCCCAACATCGATTTAAGGCCCAGATTGCTCAACTCTGCTCTCCGTCTTGGTTTATCGACCCGAGAGGAGGCGGTGACGCCGGCGGACGTGATGCTAGCGGTGGTGTTGCCGGAGGCAGTGGTGGTGATGACGGAGGTCCTCCTAGTGCTGAAGTTAGTTTGTTCCATTGGTGGCTAGGGTTATGTTTGGGCCCTAAGTTACTCGTATCTTTTGTTGGTACCGATGGTGTGGGAACTAAACTTAAGCTTGCATTTGATACTGAATTCGTGAGACCATTGGTATTTATTTGTTATGATGATATTGTCACTTTTGGAGCCAAGCCATTATTTTTCCTTGATTACTTTGCTACAAGCCGCCTTGATGTTGATGTTGCTGAAAAGGGTGAGTATGACCTCGGTGGTTTTGCAGTTGTAATTATGAACAAGGAATCAGTGATTGATGATAAGAATATTGTGGCTGGAGATGTCCTCATTGGCCTATCATCCGGTGGAGTGCTTGACATAATTAGCAAGGGAGGTGTGAAGGGGGGTAGCCCACATCACAGGAGCTGTTTTCAAATGGATCCAAGAGGTGGAAGAGTAGAAGATGCTAAAATGAGACGAACTTTTAATATGGGTATTGGGATGGTTCTTGTTGTGATTAAGGAGGCATCCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

221

Amino Acids

23.4

Weight (kDa)

5.71

Isoelectric Point (pI)

33.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000372)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g09000
rosa_chinensis	RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata	RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora	Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa	Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha	Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana	Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	224
AccB7I	CCANNNNNTGG	1 cut(s)	578
AciI	CCGC	4 cut(s)	78, 90, 105, 361
AclWI	GGATC	2 cut(s)	563, 576
AcsI	RAATTY	1 cut(s)	269
AcuI	CTGAAG	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	1 cut(s)	226
AfiI	CCNNNNNNNGG	2 cut(s)	74, 578
AflII	CTTAAG	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	563
AjiI	CACGTC	1 cut(s)	95
AluBI	AGCT	2 cut(s)	253, 555
AluI	AGCT	2 cut(s)	253, 555
Alw26I	GTCTC	2 cut(s)	271, 598
AlwI	GGATC	2 cut(s)	563, 576
AlwNI	CAGNNNCTG	1 cut(s)	555
Ama87I	CYCGRG	1 cut(s)	67
AoxI	GGCC	3 cut(s)	24, 196, 481
ApaI	GGGCCC	1 cut(s)	200
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	269
Asp718I	GGTACC	1 cut(s)	224
AspS9I	GGNCC	4 cut(s)	25, 143, 196, 197
AsuHPI	GGTGA	3 cut(s)	92, 143, 401
AsuNHI	GCTAGC	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	200
BamHI	GGATCC	1 cut(s)	568
BanI	GGYRCC	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	200
BccI	CCATC	2 cut(s)	224, 625
BcoDI	GTCTC	2 cut(s)	271, 598
BfaI	CTAG	3 cut(s)	102, 150, 182
BfrI	CTTAAG	1 cut(s)	248
BisI	GCNGC	2 cut(s)	6, 361
BlsI	GCNGC	2 cut(s)	7, 362
Bme18I	GGWCC	1 cut(s)	143
BmeT110I	CYCGRG	1 cut(s)	67
BmgBI	CACGTC	1 cut(s)	95
BmgT120I	GGNCC	4 cut(s)	25, 143, 196, 197
BmiI	GGNNCC	4 cut(s)	198, 226, 322, 570
BmsI	GCATC	2 cut(s)	88, 583
BmtI	GCTAGC	1 cut(s)	105
BoxI	GACNNNNGTC	1 cut(s)	141
BplI	GAGNNNNNCTC	2 cut(s)	459, 491
BpmI	CTGGAG	1 cut(s)	486
Bsa29I	ATCGAT	1 cut(s)	16
BsaHI	GRCGYC	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	400
BsaWI	WCCGGW	1 cut(s)	491
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 578
Bse118I	RCCGGY	1 cut(s)	86
BseCI	ATCGAT	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	400
BseGI	GGATG	3 cut(s)	488, 636, 656
BseLI	CCNNNNNNNGG	2 cut(s)	74, 578
BseRI	GAGGAG	1 cut(s)	87
BseSI	GKGCMC	1 cut(s)	200
BshFI	GGCC	3 cut(s)	26, 198, 483
BshNI	GGYRCC	1 cut(s)	224
BshVI	ATCGAT	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	67
BsiSI	CCGG	3 cut(s)	87, 117, 492
BslI	CCNNNNNNNGG	2 cut(s)	74, 578
BsmAI	GTCTC	2 cut(s)	271, 598
BsmBI	CGTCTC	1 cut(s)	598
BsnI	GGCC	3 cut(s)	26, 198, 483
Bso31I	GGTCTC	1 cut(s)	271
BsoBI	CYCGRG	1 cut(s)	67
Bsp120I	GGGCCC	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp143I	GATC	1 cut(s)	568
BspACI	CCGC	4 cut(s)	78, 90, 105, 361
BspANI	GGCC	3 cut(s)	26, 198, 483
BspDI	ATCGAT	1 cut(s)	16
BspLI	GGNNCC	4 cut(s)	198, 226, 322, 570
BspOI	GCTAGC	1 cut(s)	105
BspPI	GGATC	2 cut(s)	563, 576
BspT107I	GGYRCC	1 cut(s)	224
BspTI	CTTAAG	1 cut(s)	248
BspTNI	GGTCTC	1 cut(s)	271
BsrFI	RCCGGY	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	400
BssMI	GATC	1 cut(s)	568
BssNI	GRCGYC	1 cut(s)	84
Bst6I	CTCTTC	1 cut(s)	577
BstACI	GRCGYC	1 cut(s)	84
BstAFI	CTTAAG	1 cut(s)	248
BstC8I	GCNNGC	3 cut(s)	88, 103, 255
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	3 cut(s)	488, 636, 656
BstKTI	GATC	1 cut(s)	571
BstMAI	GTCTC	2 cut(s)	271, 598
BstMBI	GATC	1 cut(s)	568
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstPAI	GACNNNNGTC	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
Bsu15I	ATCGAT	1 cut(s)	16
BsuRI	GGCC	3 cut(s)	26, 198, 483
BsuTUI	ATCGAT	1 cut(s)	16
BtrI	CACGTC	1 cut(s)	95
BtsCI	GGATG	3 cut(s)	488, 636, 656
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	3 cut(s)	130, 444, 661
Cac8I	GCNNGC	3 cut(s)	88, 103, 255
CaiI	CAGNNNCTG	1 cut(s)	555
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	4 cut(s)	25, 143, 196, 197
ClaI	ATCGAT	1 cut(s)	16
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	225
CviQI	GTAC	1 cut(s)	225
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	1 cut(s)	570
DpnII	GATC	1 cut(s)	568
Eam1104I	CTCTTC	1 cut(s)	577
EarI	CTCTTC	1 cut(s)	577
EciI	GGCGGA	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	200
Eco31I	GGTCTC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	67
EcoO109I	RGGNCCY	2 cut(s)	143, 197
EcoRI	GAATTC	1 cut(s)	269
EcoT38I	GRGCYC	1 cut(s)	200
Esp3I	CGTCTC	1 cut(s)	598
FaiI	YATR	6 cut(s)	190, 300, 396, 425, 509, 620
Fnu4HI	GCNGC	2 cut(s)	6, 361
FokI	GGATG	3 cut(s)	475, 643, 643
FriOI	GRGCYC	1 cut(s)	200
Fsp4HI	GCNGC	2 cut(s)	6, 361
FspBI	CTAG	3 cut(s)	102, 150, 182
GluI	GCNGC	2 cut(s)	6, 361
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	3 cut(s)	26, 198, 483
HapII	CCGG	3 cut(s)	87, 117, 492
HgaI	GACGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	1 cut(s)	434
HpaII	CCGG	3 cut(s)	87, 117, 492
HphI	GGTGA	3 cut(s)	92, 143, 401
Hpy188III	TCNNGA	1 cut(s)	274
HpyAV	CCTTC	1 cut(s)	523
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	2 cut(s)	257, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	94
Hsp92I	GRCGYC	1 cut(s)	84
KpnI	GGTACC	1 cut(s)	228
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	568
LmnI	GCTCC	2 cut(s)	320, 552
LpnPI	CCDG	6 cut(s)	41, 100, 130, 450, 505, 535
LweI	GCATC	2 cut(s)	88, 583
MaeI	CTAG	3 cut(s)	102, 150, 182
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	3 cut(s)	80, 204, 310
MalI	GATC	1 cut(s)	570
MboI	GATC	1 cut(s)	568
MboII	GAAGA	2 cut(s)	594, 602
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	1 cut(s)	200
MluCI	AATT	3 cut(s)	269, 420, 510
MreI	CGCCGGCG	1 cut(s)	86
MroNI	GCCGGC	1 cut(s)	86
MseI	TTAA	4 cut(s)	21, 249, 615, 648
MspCI	CTTAAG	1 cut(s)	248
MspI	CCGG	3 cut(s)	87, 117, 492
MwoI	GCNNNNNNNGC	1 cut(s)	32
NaeI	GCCGGC	1 cut(s)	88
NdeII	GATC	1 cut(s)	568
NgoMIV	GCCGGC	1 cut(s)	86
NheI	GCTAGC	1 cut(s)	101
NlaIV	GGNNCC	4 cut(s)	198, 226, 322, 570
NmuCI	GTSAC	2 cut(s)	80, 310
PdiI	GCCGGC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	434
PflMI	CCANNNNNTGG	1 cut(s)	578
PkrI	GCNGC	2 cut(s)	7, 362
PpuMI	RGGWCCY	1 cut(s)	143
PshAI	GACNNNNGTC	1 cut(s)	141
Psp5II	RGGWCCY	1 cut(s)	143
PspN4I	GGNNCC	4 cut(s)	198, 226, 322, 570
PspOMI	GGGCCC	1 cut(s)	196
PspPI	GGNCC	4 cut(s)	25, 143, 196, 197
PspPPI	RGGWCCY	1 cut(s)	143
PstNI	CAGNNNCTG	1 cut(s)	555
PsuI	RGATCY	1 cut(s)	568
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
SaqAI	TTAA	4 cut(s)	21, 249, 615, 648
SatI	GCNGC	2 cut(s)	6, 361
Sau3AI	GATC	1 cut(s)	568
Sau96I	GGNCC	4 cut(s)	25, 143, 196, 197
SduI	GDGCHC	1 cut(s)	200
SetI	ASST	7 cut(s)	97, 145, 255, 402, 526, 557, 580
SfaNI	GCATC	2 cut(s)	88, 583
SgrAI	CRCCGGYG	1 cut(s)	86
SinI	GGWCC	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	3 cut(s)	269, 420, 510
SsiI	CCGC	4 cut(s)	78, 90, 105, 361
SspI	AATATT	1 cut(s)	457
SspMI	CTAG	3 cut(s)	102, 150, 182
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	2 cut(s)	16, 63
TasI	AATT	3 cut(s)	269, 420, 510
TauI	GCSGC	1 cut(s)	363
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	4 cut(s)	21, 249, 615, 648
Tru9I	TTAA	4 cut(s)	21, 249, 615, 648
TscAI	CASTG	2 cut(s)	130, 444
TseFI	GTSAC	2 cut(s)	80, 310
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	80, 310
TspDTI	ATGAA	1 cut(s)	440
TspGWI	ACGGA	2 cut(s)	39, 153
TspRI	CASTG	2 cut(s)	130, 444
Van91I	CCANNNNNTGG	1 cut(s)	578
Vha464I	CTTAAG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	143
XapI	RAATTY	1 cut(s)	269
XspI	CTAG	3 cut(s)	102, 150, 182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.