Rh1AG039300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000372
Physical Location & Seq
Reverse (-)
6935034 .. 6948937
13904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG039300.1

Sequence Viewer

Length: 345 bp
ATGTCGACGCTGACGATGTTGTTTGAGATTGGACAAGTCTTAGACTTGAAGGAGAAGGGGAAGGTTGCAGAGGAGATGGAGGGAGAGGAAGAACGCAGTATTAAAACAAAACAATTGAGGTTGGAGGTACAGAGGGTCCAATGGCTATTAACAATGTTCCAGACTTCCAGTGGGTTTGGACAAGGAACCGATTTTTTGGTATGGCAGAGAAGGAGATCGATGGAGTACTGGGTTGAGTTGTTTAAAAAAGAGAAAACCCCTCATGATTTTTATAATTTGGATAATCATATGCATCAGTTTAAGCCTTTAAGGGAAGCAGCGCGAGCATCGGAGCCAAAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

13.67

Weight (kDa)

8.01

Isoelectric Point (pI)

51.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 273
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 322
AfaI GTAC 2 cut(s) 129, 227
AgsI TTSAA 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 317
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 136
AvaII GGWCC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 329
BccI CCATC 2 cut(s) 70, 214
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
BmcAI AGTACT 1 cut(s) 227
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 3 cut(s) 137, 187, 333
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 2 cut(s) 301, 335
BmuI ACTGGG 1 cut(s) 238
Bsa29I ATCGAT 1 cut(s) 218
Bse1I ACTGG 2 cut(s) 168, 233
BseCI ATCGAT 1 cut(s) 218
BseNI ACTGG 2 cut(s) 168, 233
BseRI GAGGAG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 329
Bsh1236I CGCG 1 cut(s) 322
BshVI ATCGAT 1 cut(s) 218
Bsp143I GATC 1 cut(s) 215
BspDI ATCGAT 1 cut(s) 218
BspFNI CGCG 1 cut(s) 322
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 3 cut(s) 137, 187, 333
BsrI ACTGG 2 cut(s) 168, 233
BssMI GATC 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 1 cut(s) 40
BstFNI CGCG 1 cut(s) 322
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 1 cut(s) 218
BstMBI GATC 1 cut(s) 215
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstUI CGCG 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 329
Bsu15I ATCGAT 1 cut(s) 218
BsuTUI ATCGAT 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 324
CciI TCATGA 1 cut(s) 262
CfoI GCGC 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 136
ClaI ATCGAT 1 cut(s) 218
CseI GACGC 1 cut(s) 16
Csp6I GTAC 2 cut(s) 128, 226
CviAII CATG 1 cut(s) 263
CviJI RGCY 3 cut(s) 145, 304, 334
CviKI_1 RGCY 3 cut(s) 145, 304, 334
CviQI GTAC 2 cut(s) 128, 226
DdeI CTNAG 1 cut(s) 40
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
DraI TTTAAA 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 136
EcoT22I ATGCAT 1 cut(s) 294
FaeI CATG 1 cut(s) 266
FaiI YATR 5 cut(s) 202, 264, 273, 288, 290
FatI CATG 1 cut(s) 262
FauNDI CATATG 1 cut(s) 288
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 318
Fsp4HI GCNGC 1 cut(s) 318
GlaI GCGC 1 cut(s) 321
GluI GCNGC 1 cut(s) 318
HgaI GACGC 1 cut(s) 16
HhaI GCGC 1 cut(s) 322
Hin1II CATG 1 cut(s) 266
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 331
Hpy188III TCNNGA 2 cut(s) 160, 263
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 4 cut(s) 43, 49, 55, 204
HpyCH4V TGCA 2 cut(s) 68, 292
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 1 cut(s) 40
Hsp92II CATG 1 cut(s) 266
HspAI GCGC 1 cut(s) 320
Kzo9I GATC 1 cut(s) 215
LmnI GCTCC 1 cut(s) 331
LpnPI CCDG 3 cut(s) 173, 181, 214
Lsp1109I GCAGC 1 cut(s) 329
LweI GCATC 2 cut(s) 301, 335
MalI GATC 1 cut(s) 217
MboI GATC 1 cut(s) 215
MboII GAAGA 1 cut(s) 101
MfeI CAATTG 1 cut(s) 113
MluCI AATT 2 cut(s) 113, 274
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 7 cut(s) 64, 73, 79, 111, 118, 126, 270
Mph1103I ATGCAT 1 cut(s) 294
MseI TTAA 5 cut(s) 102, 149, 243, 300, 308
MunI CAATTG 1 cut(s) 113
MvnI CGCG 1 cut(s) 322
MwoI GCNNNNNNNGC 1 cut(s) 323
NdeI CATATG 1 cut(s) 288
NdeII GATC 1 cut(s) 215
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 3 cut(s) 137, 187, 333
NsiI ATGCAT 1 cut(s) 294
PagI TCATGA 1 cut(s) 262
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PkrI GCNGC 1 cut(s) 319
PsiI TTATAA 1 cut(s) 273
PspN4I GGNNCC 3 cut(s) 137, 187, 333
PspPI GGNCC 1 cut(s) 136
RsaI GTAC 2 cut(s) 129, 227
RsaNI GTAC 2 cut(s) 128, 226
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 5 cut(s) 102, 149, 243, 300, 308
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 1 cut(s) 215
Sau96I GGNCC 1 cut(s) 136
ScaI AGTACT 1 cut(s) 227
SetI ASST 4 cut(s) 66, 122, 129, 344
SfaNI GCATC 2 cut(s) 301, 335
SgeI CNNG 9 cut(s) 47, 58, 172, 180, 194, 241, 275, 333, 335
SinI GGWCC 1 cut(s) 136
Sse9I AATT 2 cut(s) 113, 274
TaqI TCGA 2 cut(s) 5, 218
TasI AATT 2 cut(s) 113, 274
TatI WGTACW 1 cut(s) 225
Tru1I TTAA 5 cut(s) 102, 149, 243, 300, 308
Tru9I TTAA 5 cut(s) 102, 149, 243, 300, 308
TscAI CASTG 1 cut(s) 175
TseI GCWGC 1 cut(s) 317
TspRI CASTG 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 136
XcmI CCANNNNNNNNNTGG 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 5
ZrmI AGTACT 1 cut(s) 227
Zsp2I ATGCAT 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.