Rh3CG224100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000372
Physical Location & Seq
Forward (+)
20947939 .. 20948322
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG224100.1

Sequence Viewer

Length: 174 bp
ATGGTTCTTTTCTCTTTCGCTCTCTCGAGATCTCAAACAATTTTGATCGGTTTCTTCTGCCGTGATCCGCCAAAACACGTCGTTGTCGGCGAGGTTGGAAGGACTAACGTCTCCGGGAACGATGCCTTCGCCGCGATCTGCAACAAGTACGACCGATACGACATCTACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.43

Weight (kDa)

8.74

Isoelectric Point (pI)

32.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 134
AciI CCGC 2 cut(s) 68, 132
AclWI GGATC 1 cut(s) 59
AfaI GTAC 1 cut(s) 149
AflIII ACRYGT 1 cut(s) 76
AjiI CACGTC 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 1 cut(s) 59
Ama87I CYCGRG 1 cut(s) 25
AsuC2I CCSGG 1 cut(s) 115
AvaI CYCGRG 1 cut(s) 25
BceAI ACGGC 1 cut(s) 45
BcnI CCSGG 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 115
BglII AGATCT 1 cut(s) 29
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 115
BmeT110I CYCGRG 1 cut(s) 25
BmgBI CACGTC 1 cut(s) 79
BmrFI CCNGG 1 cut(s) 115
BmsI GCATC 1 cut(s) 112
BoxI GACNNNNGTC 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 115
Bsh1236I CGCG 1 cut(s) 134
Bsh1285I CGRYCG 1 cut(s) 154
BsiEI CGRYCG 1 cut(s) 154
BsiHKCI CYCGRG 1 cut(s) 25
BsiSI CCGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 115
BsmBI CGTCTC 1 cut(s) 115
BsoBI CYCGRG 1 cut(s) 25
Bsp143I GATC 4 cut(s) 29, 45, 64, 135
BspACI CCGC 2 cut(s) 68, 132
BspFNI CGCG 1 cut(s) 134
BspPI GGATC 1 cut(s) 59
BssMI GATC 4 cut(s) 29, 45, 64, 135
BstFNI CGCG 1 cut(s) 134
BstKTI GATC 4 cut(s) 32, 48, 67, 138
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 4 cut(s) 29, 45, 64, 135
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstPAI GACNNNNGTC 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 113
BstUI CGCG 1 cut(s) 134
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
BtrI CACGTC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 148
CviQI GTAC 1 cut(s) 148
DpnI GATC 4 cut(s) 31, 47, 66, 137
DpnII GATC 4 cut(s) 29, 45, 64, 135
EciI GGCGGA 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 25
Esp3I CGTCTC 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 132
HapII CCGG 1 cut(s) 114
HpaII CCGG 1 cut(s) 114
Hpy188III TCNNGA 2 cut(s) 25, 27
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 2 cut(s) 93, 136
HpyCH4IV ACGT 2 cut(s) 78, 108
HpyCH4V TGCA 1 cut(s) 141
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpySE526I ACGT 2 cut(s) 78, 108
Kzo9I GATC 4 cut(s) 29, 45, 64, 135
LpnPI CCDG 1 cut(s) 127
LweI GCATC 1 cut(s) 112
MaeII ACGT 2 cut(s) 78, 108
MalI GATC 4 cut(s) 31, 47, 66, 137
MboI GATC 4 cut(s) 29, 45, 64, 135
MboII GAAGA 1 cut(s) 46
MflI RGATCY 1 cut(s) 29
MluCI AATT 1 cut(s) 39
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 1 cut(s) 85
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 115
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 131
NciI CCSGG 1 cut(s) 115
NdeII GATC 4 cut(s) 29, 45, 64, 135
PaeR7I CTCGAG 1 cut(s) 25
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 156
PfoI TCCNGGA 1 cut(s) 113
PkrI GCNGC 1 cut(s) 133
PshAI GACNNNNGTC 1 cut(s) 107
PsuI RGATCY 1 cut(s) 29
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 4 cut(s) 29, 45, 64, 135
ScrFI CCNGG 1 cut(s) 115
SetI ASST 3 cut(s) 81, 96, 111
SfaNI GCATC 1 cut(s) 112
Sfr274I CTCGAG 1 cut(s) 25
SgeI CNNG 9 cut(s) 37, 39, 74, 89, 103, 126, 127, 145, 157
SlaI CTCGAG 1 cut(s) 25
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
Sse9I AATT 1 cut(s) 39
SsiI CCGC 2 cut(s) 68, 132
StyD4I CCNGG 1 cut(s) 113
TaiI ACGT 2 cut(s) 81, 111
TaqI TCGA 1 cut(s) 26
TaqII GACCGA 1 cut(s) 168
TasI AATT 1 cut(s) 39
TauI GCSGC 1 cut(s) 134
XhoI CTCGAG 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.