Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001850.1

Orthogroup ID

OG0000372

Physical Location & Seq

Genomic Coordinates Reverse (-)

3037 .. 10925

Gene Structure 7889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001850.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgccaaagattgcatcaagatcaaggattcgagaacgcgtgctgcaacccacgctagcatatctgcctgataaaaaacgggaatatgtgattgatgatgatgctctaagtcatgcttccgagctttcagtggaaggaagagatgatatcactaatcttgatgagttggtcaaggattacaaaagaaacagaagacgtggaatgctcggatggtttaaactgaaaggtcttagttactctccagagatgcagcaaaaatggctgcaactcgagactcggcctgtattgatcttatctcttgatcgagttgagtttccggtatggcgactggttcacttccggcgtcgctccgctcatggcgtcgctactcgtggagttatggctccgcatttcgagcgtgacgattccgacggacatggctggctccgatcactgagagagagagagagtaatggtctgagtccgaatggagaagggttcagacaggcttgggatttcggtcacccggtcgtcggaaaccgcggctggccactggtcactggagcactgcaaggtggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005886 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0035371 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0071944 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1990752

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

186

Amino Acids

21.47

Weight (kDa)

9.83

Isoelectric Point (pI)

55.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000372)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g09000
rosa_chinensis	RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata	RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora	Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa	Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha	Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana	Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	353
AccII	CGCG	2 cut(s)	39, 522
AciI	CCGC	4 cut(s)	351, 386, 520, 522
AcoI	YGGCCR	1 cut(s)	527
AcyI	GRCGYC	2 cut(s)	343, 360
AfiI	CCNNNNNNNGG	1 cut(s)	512
AflIII	ACRYGT	1 cut(s)	37
AjiI	CACGTC	1 cut(s)	197
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
Alw21I	GWGCWC	1 cut(s)	547
Alw26I	GTCTC	1 cut(s)	266
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	2 cut(s)	278, 527
ApeKI	GCWGC	3 cut(s)	43, 250, 262
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	1 cut(s)	494
AsuNHI	GCTAGC	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	269
BalI	TGGCCA	1 cut(s)	529
BauI	CACGAG	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	199
Bbv12I	GWGCWC	1 cut(s)	547
BbvI	GCAGC	3 cut(s)	30, 249, 262
BccI	CCATC	1 cut(s)	204
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	56
BisI	GCNGC	4 cut(s)	44, 251, 263, 523
BlsI	GCNGC	4 cut(s)	45, 252, 264, 524
Bme1390I	CCNGG	1 cut(s)	506
BmeT110I	CYCGRG	1 cut(s)	269
BmgBI	CACGTC	1 cut(s)	197
BmiI	GGNNCC	2 cut(s)	384, 425
BmrFI	CCNGG	1 cut(s)	506
BmsI	GCATC	3 cut(s)	23, 91, 237
BmtI	GCTAGC	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	199
BpmI	CTGGAG	2 cut(s)	225, 561
BpuMI	CCSGG	1 cut(s)	506
BsaHI	GRCGYC	2 cut(s)	343, 360
BsaJI	CCNNGG	1 cut(s)	520
BsaWI	WCCGGW	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	1 cut(s)	512
Bse1I	ACTGG	3 cut(s)	333, 537, 544
BseDI	CCNNGG	1 cut(s)	520
BseGI	GGATG	1 cut(s)	215
BseLI	CCNNNNNNNGG	1 cut(s)	512
BseMII	CTCAG	2 cut(s)	425, 449
BseNI	ACTGG	3 cut(s)	333, 537, 544
BseXI	GCAGC	3 cut(s)	30, 249, 262
Bsh1236I	CGCG	2 cut(s)	39, 522
Bsh1285I	CGRYCG	1 cut(s)	510
BshFI	GGCC	2 cut(s)	280, 529
BsiEI	CGRYCG	1 cut(s)	510
BsiHKAI	GWGCWC	1 cut(s)	547
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	3 cut(s)	317, 340, 506
BslI	CCNNNNNNNGG	1 cut(s)	512
BsmAI	GTCTC	1 cut(s)	266
BsmI	GAATGC	1 cut(s)	207
BsnI	GGCC	2 cut(s)	280, 529
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp143I	GATC	4 cut(s)	20, 288, 301, 428
BspACI	CCGC	4 cut(s)	351, 386, 520, 522
BspANI	GGCC	2 cut(s)	280, 529
BspCNI	CTCAG	2 cut(s)	426, 450
BspFNI	CGCG	2 cut(s)	39, 522
BspLI	GGNNCC	2 cut(s)	384, 425
BspOI	GCTAGC	1 cut(s)	59
BsrBI	CCGCTC	1 cut(s)	353
BsrI	ACTGG	3 cut(s)	333, 537, 544
BssECI	CCNNGG	1 cut(s)	520
BssMI	GATC	4 cut(s)	20, 288, 301, 428
BssNI	GRCGYC	2 cut(s)	343, 360
BssSI	CACGAG	1 cut(s)	369
Bst2BI	CACGAG	1 cut(s)	369
Bst6I	CTCTTC	1 cut(s)	133
BstACI	GRCGYC	2 cut(s)	343, 360
BstC8I	GCNNGC	4 cut(s)	41, 57, 422, 527
BstDEI	CTNAG	4 cut(s)	107, 230, 434, 458
BstDSI	CCRYGG	1 cut(s)	520
BstEII	GGTNACC	1 cut(s)	500
BstF5I	GGATG	1 cut(s)	215
BstFNI	CGCG	2 cut(s)	39, 522
BstKTI	GATC	4 cut(s)	23, 291, 304, 431
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	4 cut(s)	20, 288, 301, 428
BstMCI	CGRYCG	1 cut(s)	510
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 259, 394
BstPI	GGTNACC	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	504
BstUI	CGCG	2 cut(s)	39, 522
BstV1I	GCAGC	3 cut(s)	30, 249, 262
BstV2I	GAAGAC	1 cut(s)	199
BsuRI	GGCC	2 cut(s)	280, 529
BtgI	CCRYGG	1 cut(s)	520
BtrI	CACGTC	1 cut(s)	197
BtsCI	GGATG	1 cut(s)	215
BtsI	GCAGTG	1 cut(s)	545
BtsIMutI	CAGTG	5 cut(s)	135, 431, 530, 537, 545
Cac8I	GCNNGC	4 cut(s)	41, 57, 422, 527
Cfr42I	CCGCGG	1 cut(s)	523
CseI	GACGC	2 cut(s)	332, 349
CviAII	CATG	3 cut(s)	113, 356, 416
CviJI	RGCY	9 cut(s)	124, 262, 280, 383, 420, 424, 488, 525, 529
CviKI_1	RGCY	9 cut(s)	124, 262, 280, 383, 420, 424, 488, 525, 529
DdeI	CTNAG	4 cut(s)	107, 230, 434, 458
DpnI	GATC	4 cut(s)	22, 290, 303, 430
DpnII	GATC	4 cut(s)	20, 288, 301, 428
DraI	TTTAAA	1 cut(s)	217
EaeI	YGGCCR	1 cut(s)	527
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
Eco32I	GATATC	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	269
Eco91I	GGTNACC	1 cut(s)	500
EcoO65I	GGTNACC	1 cut(s)	500
EcoRV	GATATC	1 cut(s)	148
FaeI	CATG	3 cut(s)	116, 359, 419
FaiI	YATR	7 cut(s)	61, 87, 114, 322, 357, 380, 417
FalI	AAGNNNNNCTT	2 cut(s)	100, 132
FatI	CATG	3 cut(s)	112, 355, 415
Fnu4HI	GCNGC	4 cut(s)	44, 251, 263, 523
FokI	GGATG	1 cut(s)	222
Fsp4HI	GCNGC	4 cut(s)	44, 251, 263, 523
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	4 cut(s)	44, 251, 263, 523
GsuI	CTGGAG	2 cut(s)	225, 561
HaeIII	GGCC	2 cut(s)	280, 529
HapII	CCGG	3 cut(s)	317, 340, 506
HgaI	GACGC	2 cut(s)	332, 349
Hin1I	GRCGYC	2 cut(s)	343, 360
Hin1II	CATG	3 cut(s)	116, 359, 419
HinfI	GANTC	4 cut(s)	28, 274, 404, 460
HpaII	CCGG	3 cut(s)	317, 340, 506
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	8 cut(s)	121, 209, 409, 428, 459, 465, 482, 515
Hpy188III	TCNNGA	6 cut(s)	18, 32, 158, 242, 271, 299
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	4 cut(s)	348, 365, 413, 515
HpyAV	CCTTC	2 cut(s)	128, 467
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	5 cut(s)	14, 46, 250, 265, 550
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 259, 394
HpyF3I	CTNAG	4 cut(s)	107, 230, 434, 458
HpySE526I	ACGT	1 cut(s)	196
Hsp92I	GRCGYC	2 cut(s)	343, 360
Hsp92II	CATG	3 cut(s)	116, 359, 419
KspI	CCGCGG	1 cut(s)	523
Kzo9I	GATC	4 cut(s)	20, 288, 301, 428
LmnI	GCTCC	4 cut(s)	353, 388, 429, 542
Lsp1109I	GCAGC	3 cut(s)	30, 249, 262
LweI	GCATC	3 cut(s)	23, 91, 237
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	4 cut(s)	233, 398, 500, 535
MalI	GATC	4 cut(s)	22, 290, 303, 430
MbiI	CCGCTC	1 cut(s)	353
MboI	GATC	4 cut(s)	20, 288, 301, 428
MboII	GAAGA	2 cut(s)	150, 204
MhlI	GDGCHC	1 cut(s)	547
MlsI	TGGCCA	1 cut(s)	529
MluI	ACGCGT	1 cut(s)	37
MluNI	TGGCCA	1 cut(s)	529
MlyI	GAGTC	2 cut(s)	268, 469
MmeI	TCCRAC	2 cut(s)	432, 493
Mox20I	TGGCCA	1 cut(s)	529
MscI	TGGCCA	1 cut(s)	529
MseI	TTAA	1 cut(s)	216
Msp20I	TGGCCA	1 cut(s)	529
MspA1I	CMGCKG	1 cut(s)	522
MspI	CCGG	3 cut(s)	317, 340, 506
MspR9I	CCNGG	1 cut(s)	506
MssI	GTTTAAAC	1 cut(s)	217
Mva1269I	GAATGC	1 cut(s)	207
MvnI	CGCG	2 cut(s)	39, 522
MwoI	GCNNNNNNNGC	3 cut(s)	52, 259, 394
NciI	CCSGG	1 cut(s)	506
NdeII	GATC	4 cut(s)	20, 288, 301, 428
NheI	GCTAGC	1 cut(s)	55
NlaIII	CATG	3 cut(s)	116, 359, 419
NlaIV	GGNNCC	2 cut(s)	384, 425
NmeAIII	GCCGAG	1 cut(s)	256
NmuCI	GTSAC	3 cut(s)	398, 500, 535
PaeR7I	CTCGAG	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	1 cut(s)	399
PctI	GAATGC	1 cut(s)	207
PfeI	GAWTC	2 cut(s)	28, 404
PkrI	GCNGC	4 cut(s)	45, 252, 264, 524
PleI	GAGTC	2 cut(s)	268, 468
PmeI	GTTTAAAC	1 cut(s)	217
PpsI	GAGTC	2 cut(s)	268, 468
PspEI	GGTNACC	1 cut(s)	500
PspN4I	GGNNCC	2 cut(s)	384, 425
SacII	CCGCGG	1 cut(s)	523
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	4 cut(s)	44, 251, 263, 523
Sau3AI	GATC	4 cut(s)	20, 288, 301, 428
SchI	GAGTC	2 cut(s)	268, 469
ScrFI	CCNGG	1 cut(s)	506
SduI	GDGCHC	1 cut(s)	547
SetI	ASST	4 cut(s)	126, 199, 229, 556
SfaNI	GCATC	3 cut(s)	23, 91, 237
Sfr274I	CTCGAG	1 cut(s)	269
Sfr303I	CCGCGG	1 cut(s)	523
SgrBI	CCGCGG	1 cut(s)	523
SlaI	CTCGAG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SsiI	CCGC	4 cut(s)	351, 386, 520, 522
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	504
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	4 cut(s)	31, 270, 304, 393
TaqII	GACCGA	1 cut(s)	488
TauI	GCSGC	1 cut(s)	525
TfiI	GAWTC	2 cut(s)	28, 404
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	5 cut(s)	135, 438, 537, 544, 552
TseFI	GTSAC	3 cut(s)	398, 500, 535
TseI	GCWGC	3 cut(s)	43, 250, 262
Tsp45I	GTSAC	3 cut(s)	398, 500, 535
TspGWI	ACGGA	1 cut(s)	426
TspRI	CASTG	5 cut(s)	135, 438, 537, 544, 552
XhoI	CTCGAG	1 cut(s)	269
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.