Rh7DG385600

Deoxynucleoside kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
52670517 .. 52691907
21391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG385600.1

Sequence Viewer

Length: 537 bp
ATGAAATTCTCTCTCCGAACATCACCTTGGCAAGATTCTGGTTTCTTAATAGATCCAATAGCTCATGTGGGGTGTGGGAAGGTTCCTGCTTCAGTTCTTGACTGTGAGCCGAACTTTGATTTCAAGAAAGACATTGAAGCAAAGAGTTTCTTTGGCCGTGATCCTCCGAAACATTTCGCCATCAGCGAGAATGGAAGGACTCTAACGTCTCCGGCGACGATGCCTTCGCCGAGATCTGCAACAAGTACGACCGATATGACGTTGACAAGTAGAAGGACTCTAACATTTTCGGCGACGATGCCTTCACTCGTCTCTAATCTGCCGTCGAGTCCGACATTGAAGCTGCTCTTTAAGTTCAGTCTCTTTCTCAGTTTCTTTCAGATTCAAACTAAAGTAGGGCTTGCTTCAAAAGAGAAAAGAACGGCATATGCAGTTGCTTTGAATGCCAAGATTCGCCGGACCAAGGCTCGATTGCTTAAAGAGGTTCGCAAGTTGAAGAGATTGGGTAAGACGTACACGACTTATGCTGCTTTATGA

Protein Analysis

178

Amino Acids

19.8

Weight (kDa)

10.35

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 205
AclWI GGATC 2 cut(s) 47, 155
AcoI YGGCCR 1 cut(s) 154
AcsI RAATTY 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 2 cut(s) 247, 515
AfiI CCNNNNNNNGG 1 cut(s) 463
AgsI TTSAA 7 cut(s) 124, 137, 340, 386, 408, 442, 496
AjuI GAANNNNNNNTTGG 2 cut(s) 10, 42
AluBI AGCT 2 cut(s) 62, 343
AluI AGCT 2 cut(s) 62, 343
Alw26I GTCTC 3 cut(s) 213, 316, 365
AlwI GGATC 2 cut(s) 47, 155
AoxI GGCC 1 cut(s) 154
ApeKI GCWGC 2 cut(s) 343, 527
ApoI RAATTY 1 cut(s) 5
ArsI GACNNNNNNTTYG 2 cut(s) 208, 240
Asp700I GAANNNNTTC 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 459
AsuHPI GGTGA 1 cut(s) 15
AvaII GGWCC 1 cut(s) 459
BbvI GCAGC 2 cut(s) 330, 514
BccI CCATC 1 cut(s) 188
BceAI ACGGC 3 cut(s) 141, 307, 438
BcoDI GTCTC 3 cut(s) 213, 316, 365
BglII AGATCT 1 cut(s) 233
BisI GCNGC 2 cut(s) 344, 528
BlsI GCNGC 2 cut(s) 345, 529
Bme18I GGWCC 1 cut(s) 459
BmgT120I GGNCC 1 cut(s) 459
BmiI GGNNCC 1 cut(s) 84
BmsI GCATC 2 cut(s) 210, 288
BsaJI CCNNGG 2 cut(s) 26, 462
Bsc4I CCNNNNNNNGG 1 cut(s) 463
BseDI CCNNGG 2 cut(s) 26, 462
BseLI CCNNNNNNNGG 1 cut(s) 463
BseMII CTCAG 1 cut(s) 382
BseXI GCAGC 2 cut(s) 330, 514
Bsh1285I CGRYCG 1 cut(s) 252
BshFI GGCC 1 cut(s) 156
BsiEI CGRYCG 1 cut(s) 252
BsiSI CCGG 2 cut(s) 212, 457
BslI CCNNNNNNNGG 1 cut(s) 463
BsmAI GTCTC 3 cut(s) 213, 316, 365
BsmBI CGTCTC 2 cut(s) 213, 316
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 1 cut(s) 156
Bsp143I GATC 3 cut(s) 52, 160, 233
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 381
BspLI GGNNCC 1 cut(s) 84
BspPI GGATC 2 cut(s) 47, 155
BssECI CCNNGG 2 cut(s) 26, 462
BssMI GATC 3 cut(s) 52, 160, 233
BssT1I CCWWGG 2 cut(s) 26, 462
Bst4CI ACNGT 1 cut(s) 104
Bst6I CTCTTC 1 cut(s) 491
BstC8I GCNNGC 1 cut(s) 402
BstDEI CTNAG 1 cut(s) 368
BstKTI GATC 3 cut(s) 55, 163, 236
BstMAI GTCTC 3 cut(s) 213, 316, 365
BstMBI GATC 3 cut(s) 52, 160, 233
BstMCI CGRYCG 1 cut(s) 252
BstMWI GCNNNNNNNGC 1 cut(s) 443
BstV1I GCAGC 2 cut(s) 330, 514
BstX2I RGATCY 2 cut(s) 52, 233
BstYI RGATCY 2 cut(s) 52, 233
BsuRI GGCC 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 402
Cfr13I GGNCC 1 cut(s) 459
Csp6I GTAC 2 cut(s) 246, 514
CviAII CATG 1 cut(s) 65
CviJI RGCY 6 cut(s) 62, 109, 156, 343, 400, 467
CviKI_1 RGCY 6 cut(s) 62, 109, 156, 343, 400, 467
CviQI GTAC 2 cut(s) 246, 514
DdeI CTNAG 1 cut(s) 368
DpnI GATC 3 cut(s) 54, 162, 235
DpnII GATC 3 cut(s) 52, 160, 233
DrdI GACNNNNNNGTC 1 cut(s) 205
DseDI GACNNNNNNGTC 1 cut(s) 205
EaeI YGGCCR 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 491
EarI CTCTTC 1 cut(s) 491
Eco130I CCWWGG 2 cut(s) 26, 462
Eco47I GGWCC 1 cut(s) 459
Eco57I CTGAAG 1 cut(s) 75
EcoT14I CCWWGG 2 cut(s) 26, 462
ErhI CCWWGG 2 cut(s) 26, 462
Esp3I CGTCTC 2 cut(s) 213, 316
FaeI CATG 1 cut(s) 68
FaiI YATR 6 cut(s) 66, 257, 427, 429, 525, 535
FalI AAGNNNNNCTT 6 cut(s) 134, 166, 332, 364, 384, 416
FatI CATG 1 cut(s) 64
FauNDI CATATG 1 cut(s) 427
Fnu4HI GCNGC 2 cut(s) 344, 528
Fsp4HI GCNGC 2 cut(s) 344, 528
GluI GCNGC 2 cut(s) 344, 528
HaeIII GGCC 1 cut(s) 156
HapII CCGG 2 cut(s) 212, 457
Hin1II CATG 1 cut(s) 68
HincII GTYRAC 1 cut(s) 264
HindII GTYRAC 1 cut(s) 264
HinfI GANTC 6 cut(s) 35, 199, 277, 328, 382, 451
HpaII CCGG 2 cut(s) 212, 457
HphI GGTGA 1 cut(s) 15
Hpy166II GTNNAC 2 cut(s) 264, 516
Hpy188I TCNGA 4 cut(s) 17, 168, 333, 381
Hpy188III TCNNGA 2 cut(s) 98, 124
Hpy8I GTNNAC 2 cut(s) 264, 516
Hpy99I CGWCG 3 cut(s) 220, 298, 328
HpyAV CCTTC 5 cut(s) 73, 189, 234, 267, 312
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4IV ACGT 3 cut(s) 206, 260, 512
HpyCH4V TGCA 2 cut(s) 239, 431
HpyF10VI GCNNNNNNNGC 1 cut(s) 443
HpyF3I CTNAG 1 cut(s) 368
HpySE526I ACGT 3 cut(s) 206, 260, 512
Hsp92II CATG 1 cut(s) 68
Kzo9I GATC 3 cut(s) 52, 160, 233
LpnPI CCDG 4 cut(s) 24, 99, 225, 470
Lsp1109I GCAGC 2 cut(s) 330, 514
LweI GCATC 2 cut(s) 210, 288
MaeII ACGT 3 cut(s) 206, 260, 512
MalI GATC 3 cut(s) 54, 162, 235
MboI GATC 3 cut(s) 52, 160, 233
MboII GAAGA 1 cut(s) 508
MflI RGATCY 2 cut(s) 52, 233
MluCI AATT 1 cut(s) 5
MlyI GAGTC 3 cut(s) 193, 271, 337
MmeI TCCRAC 1 cut(s) 356
MnlI CCTC 2 cut(s) 174, 475
MroXI GAANNNNTTC 1 cut(s) 173
MseI TTAA 3 cut(s) 47, 351, 477
MspI CCGG 2 cut(s) 212, 457
Mva1269I GAATGC 1 cut(s) 448
MwoI GCNNNNNNNGC 1 cut(s) 443
NdeI CATATG 1 cut(s) 427
NdeII GATC 3 cut(s) 52, 160, 233
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 1 cut(s) 84
NmeAIII GCCGAG 1 cut(s) 255
PcsI WCGNNNNNNNCGW 2 cut(s) 183, 212
PctI GAATGC 1 cut(s) 448
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 3 cut(s) 35, 382, 451
PkrI GCNGC 2 cut(s) 345, 529
PleI GAGTC 3 cut(s) 193, 271, 336
PpsI GAGTC 3 cut(s) 193, 271, 336
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 1 cut(s) 459
PsuI RGATCY 2 cut(s) 52, 233
RsaI GTAC 2 cut(s) 247, 515
RsaNI GTAC 2 cut(s) 246, 514
SaqAI TTAA 3 cut(s) 47, 351, 477
SatI GCNGC 2 cut(s) 344, 528
Sau3AI GATC 3 cut(s) 52, 160, 233
Sau96I GGNCC 1 cut(s) 459
SchI GAGTC 3 cut(s) 193, 271, 337
SetI ASST 8 cut(s) 28, 64, 84, 209, 263, 345, 486, 515
SfaNI GCATC 2 cut(s) 210, 288
SinI GGWCC 1 cut(s) 459
Sse9I AATT 1 cut(s) 5
StyI CCWWGG 2 cut(s) 26, 462
TaaI ACNGT 1 cut(s) 104
TaiI ACGT 3 cut(s) 209, 263, 515
TaqI TCGA 2 cut(s) 326, 469
TaqII GACCGA 1 cut(s) 266
TasI AATT 1 cut(s) 5
TfiI GAWTC 3 cut(s) 35, 382, 451
Tru1I TTAA 3 cut(s) 47, 351, 477
Tru9I TTAA 3 cut(s) 47, 351, 477
TseI GCWGC 2 cut(s) 343, 527
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 459
XapI RAATTY 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.