Rh2AG236000

CMP-sialic acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000372
Physical Location & Seq
Forward (+)
25549995 .. 25566940
16946 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG236000.1

Sequence Viewer

Length: 678 bp
ATGAGCCACGCCAAGAGAAGCGTTCCCGGGACTGTGCCGATGAAGCCGAATTTCGACGAGCGGAAACCCTCGCCGGTTGTCACCACCTCCACCGGCAAGCGTGCTCTTAATTACAATCAGGTTAGTTACCTTCAGAATGACAGAGACGATAGTTTGAAGAAGGCCTACAAAGAGTGGACTTTGGTTGCGTCTGTGCTTTCGGGTTTACAGTCCTCTCTGTGTCAATGGGCTTCCCAGATTAAGAAGCACTCGTCATACTTGATGACTGTAGAGATGTCTATTGTTGGAAGTTTTTGCTTGTTGGTTAGCACCACTAAGTCTCTTGAAGGAGAAGCTATCAGAAAACATGGGCTTTTCTCTGGATGGATTCTACTGACTTGGCTAGCATATCTGCCTGATAAAAAACGGGAATATGTGATTGATGATGATGCTCTAAGTCATGCTTCCGAGCTTTCAGTGGAAGGAAGAGATGATATCACTAATCTTGATGAGTTGGTCAAGGATTACAAAAGAAACAGAAGACGTGGAATGCTCGGATGGTTTAAACTGAAAGGTCTTAGTTACTCTCCAGAGATGCAGCAAAAAGTAACTAAAACATTTTCTGGAGCATGGAGAATGAGAGTAGCTCTTGCCTGTGCCCTTTTCATTTCACAATATAATGGACTGGCATTCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005338 GO:0005342 GO:0005463 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009555 GO:0009653 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010208 GO:0010584 GO:0010605 GO:0010927 GO:0012505 GO:0015075 GO:0015136 GO:0015165 GO:0015318 GO:0015711 GO:0015739 GO:0015780 GO:0015789 GO:0015849 GO:0015931 GO:0015932 GO:0016043 GO:0019222 GO:0022607 GO:0022857 GO:0030162 GO:0030198 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032434 GO:0032435 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0042176 GO:0042177 GO:0043062 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045861 GO:0046942 GO:0046943 GO:0048229 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051341 GO:0051354 GO:0055085 GO:0060255 GO:0061136 GO:0065007 GO:0065009 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0085029 GO:0090481 GO:0098656 GO:1901264 GO:1901505 GO:1901799 GO:1902183 GO:1903050 GO:1903051 GO:1903069 GO:1903070 GO:1903362 GO:1903363 GO:1903573 GO:1903825 GO:1903856 GO:1903857 GO:1904292 GO:1904293 GO:1905039 GO:1905897 GO:1990569 GO:2000058 GO:2000059
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nuc_sug_transp

Protein Analysis

225

Amino Acids

25.51

Weight (kDa)

9.5

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 61
AciI CCGC 1 cut(s) 61
AcsI RAATTY 1 cut(s) 49
AcuI CTGAAG 1 cut(s) 116
AgsI TTSAA 2 cut(s) 157, 326
AjiI CACGTC 1 cut(s) 524
AluBI AGCT 3 cut(s) 335, 451, 626
AluI AGCT 3 cut(s) 335, 451, 626
Alw21I GWGCWC 1 cut(s) 106
Alw26I GTCTC 2 cut(s) 138, 324
Ama87I CYCGRG 1 cut(s) 26
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 577
ApoI RAATTY 1 cut(s) 49
AsuC2I CCSGG 2 cut(s) 27, 28
AsuHPI GGTGA 1 cut(s) 73
AsuNHI GCTAGC 1 cut(s) 382
AvaI CYCGRG 1 cut(s) 26
BaeGI GKGCMC 1 cut(s) 640
BarI GAAGNNNNNNTAC 2 cut(s) 149, 181
BbsI GAAGAC 1 cut(s) 526
Bbv12I GWGCWC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 589
BccI CCATC 2 cut(s) 357, 531
BcnI CCSGG 2 cut(s) 27, 28
BcoDI GTCTC 2 cut(s) 138, 324
BfaI CTAG 1 cut(s) 383
BfmI CTRYAG 1 cut(s) 267
BisI GCNGC 1 cut(s) 578
BlsI GCNGC 1 cut(s) 579
Bme1390I CCNGG 2 cut(s) 27, 28
BmeT110I CYCGRG 1 cut(s) 26
BmgBI CACGTC 1 cut(s) 524
BmrFI CCNGG 2 cut(s) 27, 28
BmsI GCATC 2 cut(s) 418, 564
BmtI GCTAGC 1 cut(s) 386
BpiI GAAGAC 1 cut(s) 526
BplI GAGNNNNNCTC 2 cut(s) 610, 642
BpmI CTGGAG 2 cut(s) 552, 624
BpuMI CCSGG 2 cut(s) 27, 28
BsaJI CCNNGG 1 cut(s) 26
Bse118I RCCGGY 2 cut(s) 73, 92
Bse1I ACTGG 1 cut(s) 669
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 2 cut(s) 368, 542
BseNI ACTGG 1 cut(s) 669
BseSI GKGCMC 1 cut(s) 640
BseXI GCAGC 1 cut(s) 589
BshFI GGCC 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 3 cut(s) 27, 74, 93
BslFI GGGAC 1 cut(s) 43
BsmAI GTCTC 2 cut(s) 138, 324
BsmBI CGTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 43
BsmI GAATGC 2 cut(s) 534, 668
BsnI GGCC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 26
Bsp1286I GDGCHC 2 cut(s) 106, 640
BspACI CCGC 1 cut(s) 61
BspANI GGCC 1 cut(s) 164
BspOI GCTAGC 1 cut(s) 386
BsrBI CCGCTC 1 cut(s) 61
BsrFI RCCGGY 2 cut(s) 73, 92
BsrI ACTGG 1 cut(s) 669
BssAI RCCGGY 2 cut(s) 73, 92
BssECI CCNNGG 1 cut(s) 26
Bst4CI ACNGT 3 cut(s) 34, 210, 268
Bst6I CTCTTC 1 cut(s) 460
BstC8I GCNNGC 3 cut(s) 98, 102, 384
BstDEI CTNAG 3 cut(s) 315, 434, 557
BstF5I GGATG 2 cut(s) 368, 542
BstMAI GTCTC 2 cut(s) 138, 324
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstSCI CCNGG 2 cut(s) 25, 26
BstSFI CTRYAG 1 cut(s) 267
BstSLI GKGCMC 1 cut(s) 640
BstV1I GCAGC 1 cut(s) 589
BstV2I GAAGAC 1 cut(s) 526
BsuRI GGCC 1 cut(s) 164
BtrI CACGTC 1 cut(s) 524
BtsCI GGATG 2 cut(s) 368, 542
BtsIMutI CAGTG 1 cut(s) 462
Cac8I GCNNGC 3 cut(s) 98, 102, 384
Cfr10I RCCGGY 2 cut(s) 73, 92
Cfr9I CCCGGG 1 cut(s) 26
CseI GACGC 1 cut(s) 177
CviAII CATG 3 cut(s) 347, 440, 609
CviJI RGCY 9 cut(s) 6, 46, 164, 230, 335, 352, 382, 451, 626
CviKI_1 RGCY 9 cut(s) 6, 46, 164, 230, 335, 352, 382, 451, 626
DdeI CTNAG 3 cut(s) 315, 434, 557
DraI TTTAAA 1 cut(s) 544
Eam1104I CTCTTC 1 cut(s) 460
EarI CTCTTC 1 cut(s) 460
Eco147I AGGCCT 1 cut(s) 164
Eco32I GATATC 1 cut(s) 475
Eco57I CTGAAG 1 cut(s) 116
Eco88I CYCGRG 1 cut(s) 26
EcoRV GATATC 1 cut(s) 475
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 3 cut(s) 350, 443, 612
FaiI YATR 7 cut(s) 256, 348, 388, 414, 441, 610, 657
FalI AAGNNNNNCTT 2 cut(s) 427, 459
FaqI GGGAC 1 cut(s) 43
FatI CATG 3 cut(s) 346, 439, 608
Fnu4HI GCNGC 1 cut(s) 578
FokI GGATG 2 cut(s) 375, 549
Fsp4HI GCNGC 1 cut(s) 578
FspBI CTAG 1 cut(s) 383
GluI GCNGC 1 cut(s) 578
GsuI CTGGAG 2 cut(s) 552, 624
HaeIII GGCC 1 cut(s) 164
HapII CCGG 3 cut(s) 27, 74, 93
HgaI GACGC 1 cut(s) 177
Hin1II CATG 3 cut(s) 350, 443, 612
HinfI GANTC 1 cut(s) 367
HpaII CCGG 3 cut(s) 27, 74, 93
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 2 cut(s) 177, 206
Hpy188I TCNGA 4 cut(s) 135, 341, 448, 536
Hpy188III TCNNGA 5 cut(s) 323, 360, 485, 569, 603
Hpy8I GTNNAC 2 cut(s) 177, 206
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 4 cut(s) 140, 154, 320, 455
HpyCH4III ACNGT 3 cut(s) 34, 210, 268
HpyCH4IV ACGT 1 cut(s) 523
HpyCH4V TGCA 1 cut(s) 577
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 3 cut(s) 315, 434, 557
HpySE526I ACGT 1 cut(s) 523
Hsp92II CATG 3 cut(s) 350, 443, 612
LmnI GCTCC 1 cut(s) 605
Lsp1109I GCAGC 1 cut(s) 589
LweI GCATC 2 cut(s) 418, 564
MaeI CTAG 1 cut(s) 383
MaeII ACGT 1 cut(s) 523
MaeIII GTNAC 4 cut(s) 79, 125, 560, 586
MbiI CCGCTC 1 cut(s) 61
MboII GAAGA 3 cut(s) 169, 477, 531
MhlI GDGCHC 2 cut(s) 106, 640
MluCI AATT 2 cut(s) 49, 109
MmeI TCCRAC 1 cut(s) 265
MnlI CCTC 3 cut(s) 79, 97, 223
MseI TTAA 3 cut(s) 108, 240, 543
MspI CCGG 3 cut(s) 27, 74, 93
MspR9I CCNGG 2 cut(s) 27, 28
MssI GTTTAAAC 1 cut(s) 544
Mva1269I GAATGC 2 cut(s) 534, 668
MwoI GCNNNNNNNGC 1 cut(s) 43
NciI CCSGG 2 cut(s) 27, 28
NheI GCTAGC 1 cut(s) 382
NlaIII CATG 3 cut(s) 350, 443, 612
NmuCI GTSAC 1 cut(s) 79
PceI AGGCCT 1 cut(s) 164
PctI GAATGC 2 cut(s) 534, 668
PfeI GAWTC 1 cut(s) 367
PkrI GCNGC 1 cut(s) 579
PmeI GTTTAAAC 1 cut(s) 544
SaqAI TTAA 3 cut(s) 108, 240, 543
SatI GCNGC 1 cut(s) 578
ScrFI CCNGG 2 cut(s) 27, 28
SduI GDGCHC 2 cut(s) 106, 640
SetI ASST 8 cut(s) 89, 123, 132, 337, 453, 526, 556, 628
SfaNI GCATC 2 cut(s) 418, 564
SfcI CTRYAG 1 cut(s) 267
SmaI CCCGGG 1 cut(s) 28
Sse9I AATT 2 cut(s) 49, 109
SseBI AGGCCT 1 cut(s) 164
SsiI CCGC 1 cut(s) 61
SspMI CTAG 1 cut(s) 383
StuI AGGCCT 1 cut(s) 164
StyD4I CCNGG 2 cut(s) 25, 26
TaaI ACNGT 3 cut(s) 34, 210, 268
TaiI ACGT 1 cut(s) 526
TaqI TCGA 1 cut(s) 54
TasI AATT 2 cut(s) 49, 109
TfiI GAWTC 1 cut(s) 367
Tru1I TTAA 3 cut(s) 108, 240, 543
Tru9I TTAA 3 cut(s) 108, 240, 543
TscAI CASTG 1 cut(s) 462
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 1 cut(s) 577
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 56, 634
TspMI CCCGGG 1 cut(s) 26
TspRI CASTG 1 cut(s) 462
XapI RAATTY 1 cut(s) 49
XmaI CCCGGG 1 cut(s) 26
XspI CTAG 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.