RchiOBHm_Chr3g0488631

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000372
Physical Location & Seq
Forward (+)
36306398 .. 36307029
632 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45296

Sequence Viewer

Length: 345 bp
ATGTTGGAGATAAAATTCCTCATAGAAAAAAAATTCACAGTCTTTTTCACTCTCACTCTCTCGAGATCTCAAACAATTTTGATCGGTTTCTTCCGCCATGATCCGCTGAAACACGTCGTCGTTGGCGAGAATGGAAGGACTCTAACGTCTTCGGCGACGATGCCTTCGCCGCGATCTGCAACAAGTACGACCGATACGGCATCGACAAGTAGAAGGACTCTAATGTCTCCGGCGACGATGCCTTCGCTCGCCTCTACTCTGCCATCGAGTTCAACATTGAAGCTGCTCTTCAGAAAGCGGAGCTTGCTTCAAAAGAGAAAAGTAGGGCATTTGCAGTTGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.69

Weight (kDa)

11.73

Isoelectric Point (pI)

75.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 145, 223
AccII CGCG 1 cut(s) 172
AciI CCGC 4 cut(s) 94, 104, 170, 298
AclWI GGATC 1 cut(s) 95
AcsI RAATTY 2 cut(s) 14, 32
AcuI CTGAAG 1 cut(s) 274
AfaI GTAC 1 cut(s) 187
AflIII ACRYGT 1 cut(s) 112
AgsI TTSAA 3 cut(s) 273, 280, 311
AjiI CACGTC 1 cut(s) 115
AluBI AGCT 2 cut(s) 283, 303
AluI AGCT 2 cut(s) 283, 303
Alw26I GTCTC 1 cut(s) 231
AlwI GGATC 1 cut(s) 95
Ama87I CYCGRG 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 283
ApoI RAATTY 2 cut(s) 14, 32
ArsI GACNNNNNNTTYG 4 cut(s) 148, 180, 226, 258
AvaI CYCGRG 1 cut(s) 61
BbsI GAAGAC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 270
BccI CCATC 1 cut(s) 271
BceAI ACGGC 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 231
BglII AGATCT 1 cut(s) 65
BisI GCNGC 2 cut(s) 170, 284
BlsI GCNGC 2 cut(s) 171, 285
BmeT110I CYCGRG 1 cut(s) 61
BmgBI CACGTC 1 cut(s) 115
BmsI GCATC 3 cut(s) 150, 209, 228
BpiI GAAGAC 1 cut(s) 141
BseXI GCAGC 1 cut(s) 270
Bsh1236I CGCG 1 cut(s) 172
Bsh1285I CGRYCG 1 cut(s) 192
BsiEI CGRYCG 1 cut(s) 192
BsiHKCI CYCGRG 1 cut(s) 61
BsiSI CCGG 1 cut(s) 230
BsmAI GTCTC 1 cut(s) 231
BsoBI CYCGRG 1 cut(s) 61
Bsp143I GATC 4 cut(s) 65, 81, 100, 173
BspACI CCGC 4 cut(s) 94, 104, 170, 298
BspFNI CGCG 1 cut(s) 172
BspPI GGATC 1 cut(s) 95
BspQI GCTCTTC 1 cut(s) 293
BssMI GATC 4 cut(s) 65, 81, 100, 173
Bst4CI ACNGT 1 cut(s) 40
Bst6I CTCTTC 1 cut(s) 293
BstC8I GCNNGC 2 cut(s) 249, 305
BstFNI CGCG 1 cut(s) 172
BstKTI GATC 4 cut(s) 68, 84, 103, 176
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 4 cut(s) 65, 81, 100, 173
BstMCI CGRYCG 1 cut(s) 192
BstMWI GCNNNNNNNGC 2 cut(s) 169, 304
BstUI CGCG 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 270
BstV2I GAAGAC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 65
BstYI RGATCY 1 cut(s) 65
BtrI CACGTC 1 cut(s) 115
Cac8I GCNNGC 2 cut(s) 249, 305
Csp6I GTAC 1 cut(s) 186
CviAII CATG 1 cut(s) 98
CviJI RGCY 2 cut(s) 283, 303
CviKI_1 RGCY 2 cut(s) 283, 303
CviQI GTAC 1 cut(s) 186
DpnI GATC 4 cut(s) 67, 83, 102, 175
DpnII GATC 4 cut(s) 65, 81, 100, 173
DrdI GACNNNNNNGTC 2 cut(s) 145, 223
DseDI GACNNNNNNGTC 2 cut(s) 145, 223
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
EciI GGCGGA 1 cut(s) 83
Eco57I CTGAAG 1 cut(s) 274
Eco88I CYCGRG 1 cut(s) 61
FaeI CATG 1 cut(s) 101
FaiI YATR 2 cut(s) 23, 99
FalI AAGNNNNNCTT 4 cut(s) 272, 304, 287, 319
FatI CATG 1 cut(s) 97
Fnu4HI GCNGC 2 cut(s) 170, 284
Fsp4HI GCNGC 2 cut(s) 170, 284
GluI GCNGC 2 cut(s) 170, 284
HapII CCGG 1 cut(s) 230
Hin1II CATG 1 cut(s) 101
HinfI GANTC 2 cut(s) 139, 217
HpaII CCGG 1 cut(s) 230
Hpy188I TCNGA 2 cut(s) 293, 344
Hpy188III TCNNGA 2 cut(s) 61, 63
Hpy99I CGWCG 4 cut(s) 119, 122, 160, 238
HpyAV CCTTC 4 cut(s) 129, 174, 207, 252
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4IV ACGT 2 cut(s) 114, 146
HpyCH4V TGCA 2 cut(s) 179, 334
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 304
HpySE526I ACGT 2 cut(s) 114, 146
Hsp92II CATG 1 cut(s) 101
Kzo9I GATC 4 cut(s) 65, 81, 100, 173
LguI GCTCTTC 1 cut(s) 293
LmnI GCTCC 1 cut(s) 300
LpnPI CCDG 1 cut(s) 243
Lsp1109I GCAGC 1 cut(s) 270
LweI GCATC 3 cut(s) 150, 209, 228
MaeII ACGT 2 cut(s) 114, 146
MalI GATC 4 cut(s) 67, 83, 102, 175
MboI GATC 4 cut(s) 65, 81, 100, 173
MboII GAAGA 3 cut(s) 82, 141, 280
MflI RGATCY 1 cut(s) 65
MluCI AATT 3 cut(s) 14, 32, 75
MlyI GAGTC 2 cut(s) 133, 211
MnlI CCTC 2 cut(s) 29, 262
MspA1I CMGCKG 1 cut(s) 106
MspI CCGG 1 cut(s) 230
MvnI CGCG 1 cut(s) 172
MwoI GCNNNNNNNGC 2 cut(s) 169, 304
NdeII GATC 4 cut(s) 65, 81, 100, 173
NlaIII CATG 1 cut(s) 101
PaeR7I CTCGAG 1 cut(s) 61
PciSI GCTCTTC 1 cut(s) 293
PcsI WCGNNNNNNNCGW 2 cut(s) 123, 152
PkrI GCNGC 2 cut(s) 171, 285
PleI GAGTC 2 cut(s) 133, 211
PpsI GAGTC 2 cut(s) 133, 211
PsuI RGATCY 1 cut(s) 65
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
SapI GCTCTTC 1 cut(s) 293
SatI GCNGC 2 cut(s) 170, 284
Sau3AI GATC 4 cut(s) 65, 81, 100, 173
SchI GAGTC 2 cut(s) 133, 211
SetI ASST 4 cut(s) 117, 149, 285, 305
SfaNI GCATC 3 cut(s) 150, 209, 228
Sfr274I CTCGAG 1 cut(s) 61
SlaI CTCGAG 1 cut(s) 61
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
Sse9I AATT 3 cut(s) 14, 32, 75
SsiI CCGC 4 cut(s) 94, 104, 170, 298
TaaI ACNGT 1 cut(s) 40
TaiI ACGT 2 cut(s) 117, 149
TaqI TCGA 3 cut(s) 62, 203, 266
TaqII GACCGA 1 cut(s) 206
TasI AATT 3 cut(s) 14, 32, 75
TauI GCSGC 1 cut(s) 172
TseI GCWGC 1 cut(s) 283
XapI RAATTY 2 cut(s) 14, 32
XhoI CTCGAG 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.