Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000372

Physical Location & Seq

Genomic Coordinates Forward (+)

19068382 .. 19070706

Gene Structure 2325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG111700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCCTTCGCCGCGATCTGCAACAACTGCTCTTCAGAAAGCGGAGCTTGCTTCAAAAGAGAAAAGTAGGGCATTTGCAGTTGCTCTGAATGCCGTGATTTGCCGGACCAAGGCTCGATTGCTTAAAGAGGTTCCCAAGTTGCAGAGATTGGCTGTAAAGAAGATTCATAGAAGAAAGGTACGGGCATGGAAAATGATATGTATTTTGTCACATTTCGTCTGTCAAGATATAGTTTCAGAAGTTGCATGTTGCTTGCACACATCCCTCTATAGGAACAACTTACCTGCAGTTCGTCAATATTTGGAGAGCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000451 GO:0000453 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006355 GO:0006357 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008175 GO:0008649 GO:0008757 GO:0009451 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016072 GO:0016423 GO:0016435 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0022613 GO:0030488 GO:0031167 GO:0031323 GO:0031326 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070039 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:0140102 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase

Protein Analysis

104

Amino Acids

11.86

Weight (kDa)

10.45

Isoelectric Point (pI)

56.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000372)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g09000
rosa_chinensis	RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata	RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora	Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa	Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha	Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana	Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	292
AccII	CGCG	1 cut(s)	13
AciI	CCGC	2 cut(s)	11, 41
AcuI	CTGAAG	1 cut(s)	17
AfaI	GTAC	1 cut(s)	180
AfiI	CCNNNNNNNGG	2 cut(s)	109, 270
AgsI	TTSAA	1 cut(s)	54
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	105
AvaII	GGWCC	1 cut(s)	105
BceAI	ACGGC	1 cut(s)	77
BfmI	CTRYAG	2 cut(s)	268, 285
BfuAI	ACCTGC	1 cut(s)	292
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
Bme18I	GGWCC	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 270
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	260
BseLI	CCNNNNNNNGG	2 cut(s)	109, 270
Bsh1236I	CGCG	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	103
BslI	CCNNNNNNNGG	2 cut(s)	109, 270
BsmI	GAATGC	1 cut(s)	94
Bsp143I	GATC	1 cut(s)	14
BspACI	CCGC	2 cut(s)	11, 41
BspFNI	CGCG	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	132
BspMAI	CTGCAG	1 cut(s)	289
BspMI	ACCTGC	1 cut(s)	292
BspQI	GCTCTTC	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	108
Bst6I	CTCTTC	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	48, 254
BstF5I	GGATG	1 cut(s)	260
BstFNI	CGCG	1 cut(s)	13
BstKTI	GATC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	14
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 26, 47, 89
BstNSI	RCATGY	1 cut(s)	249
BstSFI	CTRYAG	2 cut(s)	268, 285
BstUI	CGCG	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	260
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	2 cut(s)	48, 254
Cfr13I	GGNCC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	179
CviAII	CATG	2 cut(s)	186, 246
CviJI	RGCY	3 cut(s)	46, 113, 152
CviKI_1	RGCY	3 cut(s)	46, 113, 152
CviQI	GTAC	1 cut(s)	179
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	17
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	2 cut(s)	189, 249
FaiI	YATR	6 cut(s)	168, 187, 199, 230, 247, 270
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FatI	CATG	2 cut(s)	185, 245
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	1 cut(s)	247
Fsp4HI	GCNGC	1 cut(s)	11
GluI	GCNGC	1 cut(s)	11
HapII	CCGG	1 cut(s)	103
Hin1II	CATG	2 cut(s)	189, 249
HinfI	GANTC	1 cut(s)	163
HpaII	CCGG	1 cut(s)	103
Hpy188I	TCNGA	3 cut(s)	36, 87, 238
Hpy188III	TCNNGA	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	15
HpyCH4V	TGCA	6 cut(s)	20, 77, 142, 245, 256, 287
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 26, 47, 89
Hsp92II	CATG	2 cut(s)	189, 249
Kzo9I	GATC	1 cut(s)	14
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	2 cut(s)	116, 297
MaeIII	GTNAC	1 cut(s)	207
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	3 cut(s)	23, 172, 183
MnlI	CCTC	2 cut(s)	121, 275
MseI	TTAA	1 cut(s)	123
MspI	CCGG	1 cut(s)	103
Mva1269I	GAATGC	1 cut(s)	94
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	4 cut(s)	10, 26, 47, 89
NdeII	GATC	1 cut(s)	14
NlaIII	CATG	2 cut(s)	189, 249
NlaIV	GGNNCC	1 cut(s)	132
NmuCI	GTSAC	1 cut(s)	207
NspI	RCATGY	1 cut(s)	249
PciSI	GCTCTTC	1 cut(s)	36
PctI	GAATGC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	289
RsaI	GTAC	1 cut(s)	180
RsaNI	GTAC	1 cut(s)	179
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	1 cut(s)	14
Sau96I	GGNCC	1 cut(s)	105
SetI	ASST	4 cut(s)	48, 132, 180, 286
SfcI	CTRYAG	2 cut(s)	268, 285
SinI	GGWCC	1 cut(s)	105
SsiI	CCGC	2 cut(s)	11, 41
SspI	AATATT	1 cut(s)	299
StyI	CCWWGG	1 cut(s)	108
TaqI	TCGA	1 cut(s)	115
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	207
Tsp45I	GTSAC	1 cut(s)	207
TspDTI	ATGAA	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	105
XceI	RCATGY	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.