Rh1DG163400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000372
Physical Location & Seq
Reverse (-)
33640750 .. 33648873
8124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG163400.1

Sequence Viewer

Length: 573 bp
ATGGGGCAAGGGCCGAGCAGTGTGGGCCAAGGGTCGAGTGGTGTGGAGCAAACAAGTGGTCTGGATGGGTTGATGCATGATGTGGATGTGATGGATTATTTGCAGTCCTATGGTGGTGGTTTGGATTTAGGAGATGAAGAAGCAGCTGAAAGTGAAAGAGGCAATGATGATGAAGCAACAAGTGAGGATGGGGACTATGATCCTAAATTCGATGATGATGAATATGACCATTATGGAACTGATGAGGATGACTGGTTGGTGGAAGGTGAGATGTTTTCCGTGGCTGGCCAACTCAAACGTGCTTTTCTTCAGCTCGGCCGGGTTCAACGCCCAGGTGACAGTCCAAGACAACGAGCCGAAGGAGTGGCTCCTGAATCGGTCAGGAGGGAGGTGATTAGGGCTAGTGTGTTCCGGGAGTGCAAGAAGAGGAGGTTTTTCGAGAACAACCAGGACAAGAAGAAGAGAGTGGGCGCCATATCCAAGAAAAAGAAGAAGAGAATGGCTAGGCAGGCTACTAGGAGGAACAAGAACGACTCCCAAAGGTTTGATCTTTCTGGCTCTTTGTGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.25

Weight (kDa)

5.05

Isoelectric Point (pI)

64.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 470
AclWI GGATC 1 cut(s) 194
AcoI YGGCCR 2 cut(s) 286, 316
AcsI RAATTY 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 293
AcyI GRCGYC 1 cut(s) 471
AgsI TTSAA 1 cut(s) 326
AjnI CCWGG 2 cut(s) 331, 447
AluBI AGCT 2 cut(s) 146, 313
AluI AGCT 2 cut(s) 146, 313
Alw21I GWGCWC 1 cut(s) 569
AlwI GGATC 1 cut(s) 194
AoxI GGCC 4 cut(s) 11, 25, 286, 316
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 206
ArsI GACNNNNNNTTYG 2 cut(s) 43, 75
AspLEI GCGC 1 cut(s) 473
AspS9I GGNCC 2 cut(s) 11, 25
AsuC2I CCSGG 2 cut(s) 320, 413
AsuHPI GGTGA 3 cut(s) 278, 347, 403
BalI TGGCCA 1 cut(s) 288
BanI GGYRCC 1 cut(s) 470
Bbv12I GWGCWC 1 cut(s) 569
BbvI GCAGC 1 cut(s) 155
BccI CCATC 3 cut(s) 59, 85, 182
BciT130I CCWGG 2 cut(s) 333, 449
BcnI CCSGG 2 cut(s) 320, 413
BfaI CTAG 3 cut(s) 402, 504, 516
BfoI RGCGCY 1 cut(s) 474
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 4 cut(s) 320, 333, 413, 449
BmgT120I GGNCC 2 cut(s) 11, 25
BmiI GGNNCC 2 cut(s) 369, 472
BmrFI CCNGG 4 cut(s) 320, 333, 413, 449
BmsI GCATC 1 cut(s) 63
BpuMI CCSGG 2 cut(s) 320, 413
BsaHI GRCGYC 1 cut(s) 471
BsaJI CCNNGG 3 cut(s) 28, 279, 331
Bse1I ACTGG 1 cut(s) 257
Bse3DI GCAATG 1 cut(s) 169
BseBI CCWGG 2 cut(s) 333, 449
BseDI CCNNGG 3 cut(s) 28, 279, 331
BseGI GGATG 4 cut(s) 70, 91, 193, 253
BseMI GCAATG 1 cut(s) 169
BseNI ACTGG 1 cut(s) 257
BseRI GAGGAG 1 cut(s) 442
BseX3I CGGCCG 1 cut(s) 316
BseXI GCAGC 1 cut(s) 155
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 4 cut(s) 13, 27, 288, 318
BshNI GGYRCC 1 cut(s) 470
BsiEI CGRYCG 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 569
BsiSI CCGG 2 cut(s) 319, 412
BslFI GGGAC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 4 cut(s) 13, 27, 288, 318
Bsp1286I GDGCHC 1 cut(s) 569
Bsp143I GATC 2 cut(s) 199, 547
BspANI GGCC 4 cut(s) 13, 27, 288, 318
BspLI GGNNCC 2 cut(s) 369, 472
BspPI GGATC 1 cut(s) 194
BspT107I GGYRCC 1 cut(s) 470
BsrDI GCAATG 1 cut(s) 169
BsrI ACTGG 1 cut(s) 257
BssECI CCNNGG 3 cut(s) 28, 279, 331
BssMI GATC 2 cut(s) 199, 547
BssNI GRCGYC 1 cut(s) 471
BssT1I CCWWGG 1 cut(s) 28
Bst2UI CCWGG 2 cut(s) 333, 449
Bst4CI ACNGT 1 cut(s) 341
Bst6I CTCTTC 3 cut(s) 419, 455, 488
BstACI GRCGYC 1 cut(s) 471
BstC8I GCNNGC 2 cut(s) 286, 510
BstDSI CCRYGG 1 cut(s) 279
BstF5I GGATG 4 cut(s) 70, 91, 193, 253
BstH2I RGCGCY 1 cut(s) 474
BstHHI GCGC 1 cut(s) 473
BstKTI GATC 2 cut(s) 202, 550
BstMBI GATC 2 cut(s) 199, 547
BstMCI CGRYCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 3 cut(s) 24, 509, 564
BstNI CCWGG 2 cut(s) 333, 449
BstSCI CCNGG 4 cut(s) 318, 331, 411, 447
BstV1I GCAGC 1 cut(s) 155
BstZI CGGCCG 1 cut(s) 316
BsuRI GGCC 4 cut(s) 13, 27, 288, 318
BtgI CCRYGG 1 cut(s) 279
BtsCI GGATG 4 cut(s) 70, 91, 193, 253
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 25
Cac8I GCNNGC 2 cut(s) 286, 510
CfoI GCGC 1 cut(s) 473
Cfr13I GGNCC 2 cut(s) 11, 25
CviAII CATG 1 cut(s) 77
DinI GGCGCC 1 cut(s) 472
DpnI GATC 2 cut(s) 201, 549
DpnII GATC 2 cut(s) 199, 547
EaeI YGGCCR 2 cut(s) 286, 316
EagI CGGCCG 1 cut(s) 316
Eam1104I CTCTTC 3 cut(s) 419, 455, 488
EarI CTCTTC 3 cut(s) 419, 455, 488
EclXI CGGCCG 1 cut(s) 316
Eco130I CCWWGG 1 cut(s) 28
Eco52I CGGCCG 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 293
EcoRII CCWGG 2 cut(s) 331, 447
EcoT14I CCWWGG 1 cut(s) 28
EcoT22I ATGCAT 1 cut(s) 78
EgeI GGCGCC 1 cut(s) 472
EheI GGCGCC 1 cut(s) 472
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 1 cut(s) 80
FaiI YATR 6 cut(s) 78, 111, 198, 225, 234, 476
FaqI GGGAC 1 cut(s) 206
FatI CATG 1 cut(s) 76
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 4 cut(s) 77, 98, 200, 260
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 3 cut(s) 402, 504, 516
GlaI GCGC 1 cut(s) 472
GluI GCNGC 1 cut(s) 144
HaeII RGCGCY 1 cut(s) 474
HaeIII GGCC 4 cut(s) 13, 27, 288, 318
HapII CCGG 2 cut(s) 319, 412
HhaI GCGC 1 cut(s) 473
Hin1I GRCGYC 1 cut(s) 471
Hin1II CATG 1 cut(s) 80
Hin6I GCGC 1 cut(s) 471
HinP1I GCGC 1 cut(s) 471
HinfI GANTC 2 cut(s) 374, 533
HpaII CCGG 2 cut(s) 319, 412
HphI GGTGA 3 cut(s) 278, 347, 403
Hpy188III TCNNGA 4 cut(s) 62, 371, 382, 439
HpyAV CCTTC 2 cut(s) 257, 353
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 3 cut(s) 76, 103, 420
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 509, 564
HpySE526I ACGT 1 cut(s) 298
Hsp92I GRCGYC 1 cut(s) 471
Hsp92II CATG 1 cut(s) 80
HspAI GCGC 1 cut(s) 471
KasI GGCGCC 1 cut(s) 470
Kzo9I GATC 2 cut(s) 199, 547
LmnI GCTCC 2 cut(s) 46, 373
Lsp1109I GCAGC 1 cut(s) 155
LweI GCATC 1 cut(s) 63
MaeI CTAG 3 cut(s) 402, 504, 516
MaeII ACGT 1 cut(s) 298
MaeIII GTNAC 1 cut(s) 335
MalI GATC 2 cut(s) 201, 549
MboI GATC 2 cut(s) 199, 547
MboII GAAGA 7 cut(s) 149, 299, 436, 469, 472, 502, 505
MhlI GDGCHC 1 cut(s) 569
MlsI TGGCCA 1 cut(s) 288
MluCI AATT 1 cut(s) 206
MluNI TGGCCA 1 cut(s) 288
Mly113I GGCGCC 1 cut(s) 471
MlyI GAGTC 1 cut(s) 527
MnlI CCTC 8 cut(s) 152, 178, 238, 378, 382, 420, 423, 513
Mox20I TGGCCA 1 cut(s) 288
Mph1103I ATGCAT 1 cut(s) 78
MscI TGGCCA 1 cut(s) 288
MseI TTAA 1 cut(s) 571
Msp20I TGGCCA 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 2 cut(s) 319, 412
MspR9I CCNGG 4 cut(s) 320, 333, 413, 449
MvaI CCWGG 2 cut(s) 333, 449
MwoI GCNNNNNNNGC 3 cut(s) 24, 509, 564
NarI GGCGCC 1 cut(s) 471
NciI CCSGG 2 cut(s) 320, 413
NdeII GATC 2 cut(s) 199, 547
NlaIII CATG 1 cut(s) 80
NlaIV GGNNCC 2 cut(s) 369, 472
NmeAIII GCCGAG 2 cut(s) 39, 294
NmuCI GTSAC 1 cut(s) 335
NsiI ATGCAT 1 cut(s) 78
PfeI GAWTC 1 cut(s) 374
PfoI TCCNGGA 1 cut(s) 411
PkrI GCNGC 1 cut(s) 145
PleI GAGTC 1 cut(s) 527
PluTI GGCGCC 1 cut(s) 474
PpsI GAGTC 1 cut(s) 527
Psp6I CCWGG 2 cut(s) 331, 447
PspGI CCWGG 2 cut(s) 331, 447
PspN4I GGNNCC 2 cut(s) 369, 472
PspPI GGNCC 2 cut(s) 11, 25
PvuII CAGCTG 1 cut(s) 146
SaqAI TTAA 1 cut(s) 571
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 2 cut(s) 199, 547
Sau96I GGNCC 2 cut(s) 11, 25
SchI GAGTC 1 cut(s) 527
ScrFI CCNGG 4 cut(s) 320, 333, 413, 449
SduI GDGCHC 1 cut(s) 569
SetI ASST 8 cut(s) 148, 268, 301, 315, 337, 393, 434, 545
SfaNI GCATC 1 cut(s) 63
SfoI GGCGCC 1 cut(s) 472
Sse9I AATT 1 cut(s) 206
SspDI GGCGCC 1 cut(s) 470
SspMI CTAG 3 cut(s) 402, 504, 516
StyD4I CCNGG 4 cut(s) 318, 331, 411, 447
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 341
TaiI ACGT 1 cut(s) 301
TaqI TCGA 3 cut(s) 35, 210, 438
TaqII GACCGA 1 cut(s) 367
TasI AATT 1 cut(s) 206
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 1 cut(s) 571
Tru9I TTAA 1 cut(s) 571
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 3 cut(s) 150, 186, 234
TspGWI ACGGA 1 cut(s) 268
TspRI CASTG 1 cut(s) 25
XapI RAATTY 1 cut(s) 206
XcmI CCANNNNNNNNNTGG 1 cut(s) 35
XspI CTAG 3 cut(s) 402, 504, 516
Zsp2I ATGCAT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.