Rh6AG074700

Belongs to the syntaxin family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
10588167 .. 10588667
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG074700.1

Sequence Viewer

Length: 225 bp
ATGCAGAAAGCGGAGCTTGCTTCAAAAGAGAAAAGTAGGGCATTTGCAGTTGCTCTGAATGCCGTGATTCCCCGGACCAAGGCTCGATTGCTTAAAGAGGTTCCCAAGTTGCAGAGATTGGCTGTAAAGAAGGTTAAAGGGCTTTCATATGAAGAGTTTGCTGCTCGTAATAAGTTGGTTGTAAGGTTTGTTTACAGAAAAAGACAAAACTGGAAGAAACCATAG

Protein Analysis

74

Amino Acids

8.62

Weight (kDa)

11.15

Isoelectric Point (pI)

20.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 1 cut(s) 24
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 161
AspS9I GGNCC 1 cut(s) 75
AsuC2I CCSGG 1 cut(s) 73
AvaII GGWCC 1 cut(s) 75
BbvI GCAGC 1 cut(s) 148
BceAI ACGGC 1 cut(s) 47
BcnI CCSGG 1 cut(s) 73
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 73
Bme18I GGWCC 1 cut(s) 75
BmgT120I GGNCC 1 cut(s) 75
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 73
BsaJI CCNNGG 2 cut(s) 71, 78
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 215
BseDI CCNNGG 2 cut(s) 71, 78
BseLI CCNNNNNNNGG 1 cut(s) 79
BseNI ACTGG 1 cut(s) 215
BseXI GCAGC 1 cut(s) 148
BsiSI CCGG 1 cut(s) 73
BslI CCNNNNNNNGG 1 cut(s) 79
BsmI GAATGC 1 cut(s) 64
BspACI CCGC 1 cut(s) 11
BspLI GGNNCC 1 cut(s) 102
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 2 cut(s) 71, 78
BssT1I CCWWGG 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 18
BstMWI GCNNNNNNNGC 2 cut(s) 17, 59
BstSCI CCNGG 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 75
CviJI RGCY 4 cut(s) 16, 83, 122, 142
CviKI_1 RGCY 4 cut(s) 16, 83, 122, 142
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaiI YATR 3 cut(s) 148, 150, 223
FalI AAGNNNNNCTT 1 cut(s) 32
FauNDI CATATG 1 cut(s) 148
Fnu4HI GCNGC 1 cut(s) 162
Fsp4HI GCNGC 1 cut(s) 162
GluI GCNGC 1 cut(s) 162
HapII CCGG 1 cut(s) 73
HinfI GANTC 1 cut(s) 67
HpaII CCGG 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 1 cut(s) 57
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 124
HpyCH4V TGCA 3 cut(s) 4, 47, 112
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 59
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 2 cut(s) 86, 196
Lsp1109I GCAGC 1 cut(s) 148
MboII GAAGA 1 cut(s) 164
MnlI CCTC 1 cut(s) 91
MseI TTAA 2 cut(s) 93, 135
MspI CCGG 1 cut(s) 73
MspR9I CCNGG 1 cut(s) 73
Mva1269I GAATGC 1 cut(s) 64
MwoI GCNNNNNNNGC 2 cut(s) 17, 59
NciI CCSGG 1 cut(s) 73
NdeI CATATG 1 cut(s) 148
NlaIV GGNNCC 1 cut(s) 102
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 67
PkrI GCNGC 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 1 cut(s) 75
SaqAI TTAA 2 cut(s) 93, 135
SatI GCNGC 1 cut(s) 162
Sau96I GGNCC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 73
SetI ASST 4 cut(s) 18, 102, 135, 188
SgeI CNNG 8 cut(s) 29, 76, 84, 85, 91, 96, 118, 177
SinI GGWCC 1 cut(s) 75
SsiI CCGC 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 71
StyI CCWWGG 1 cut(s) 78
TaqI TCGA 1 cut(s) 85
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 2 cut(s) 93, 135
Tru9I TTAA 2 cut(s) 93, 135
TseI GCWGC 1 cut(s) 161
TspDTI ATGAA 2 cut(s) 135, 165
VpaK11BI GGWCC 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.