Rh1BG055400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000372
Physical Location & Seq
Reverse (-)
8100966 .. 8101965
1000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG055400.1

Sequence Viewer

Length: 369 bp
ATGCAAGCAAGCATCCTAACTTTGCTAAAAGGAAATGCAGCTACAGTACCGTTGAGGATTGAAATTGTCACCTCCAAGTTCAAATTTTACTTCAACAATAAAACCTGGGCTTACCTTGATGGTGAGGTCGAGAGGGAGAGCCCAGGAGATGGAGCTGTGCTTGGAGGCTCGTCGTCTTGCCGAGCTCTTACCGGCCTCGAGGAGCACCGATCCCAACTGCAGGGCGCGATCAATGAGTTTGATCTGATCGGCGTCGAAGTCACGGGAGTCGAGGATCCACTCGAAGGAGAGATCGATGGTGAAGGGCGGCGAGTCGGAGAAGTCGAGGAAGGTCTTAAGGAGTCGCGGTCAAGGAGGTTGGGATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.34

Weight (kDa)

4.77

Isoelectric Point (pI)

56.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 197
AccB7I CCANNNNNTGG 1 cut(s) 149
AccII CGCG 2 cut(s) 227, 346
AciI CCGC 2 cut(s) 307, 346
AclWI GGATC 3 cut(s) 204, 269, 282
AcsI RAATTY 1 cut(s) 83
AcyI GRCGYC 1 cut(s) 252
AfaI GTAC 1 cut(s) 48
AfiI CCNNNNNNNGG 3 cut(s) 149, 220, 284
AflII CTTAAG 1 cut(s) 335
AgsI TTSAA 3 cut(s) 62, 82, 94
AjnI CCWGG 2 cut(s) 104, 142
AluBI AGCT 3 cut(s) 41, 155, 185
AluI AGCT 3 cut(s) 41, 155, 185
Alw21I GWGCWC 2 cut(s) 187, 207
AlwI GGATC 3 cut(s) 204, 269, 282
Ama87I CYCGRG 1 cut(s) 197
AoxI GGCC 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 83
AspLEI GCGC 1 cut(s) 227
AsuHPI GGTGA 3 cut(s) 61, 134, 311
AvaI CYCGRG 1 cut(s) 197
BamHI GGATCC 1 cut(s) 274
BanII GRGCYC 2 cut(s) 143, 187
Bbv12I GWGCWC 2 cut(s) 187, 207
BbvI GCAGC 1 cut(s) 50
BccI CCATC 4 cut(s) 113, 143, 290, 357
BciT130I CCWGG 2 cut(s) 106, 144
BfmI CTRYAG 2 cut(s) 42, 218
BfrI CTTAAG 1 cut(s) 335
BisI GCNGC 2 cut(s) 39, 308
BlsI GCNGC 2 cut(s) 40, 309
Bme1390I CCNGG 2 cut(s) 106, 144
BmeT110I CYCGRG 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 2 cut(s) 106, 144
BmsI GCATC 1 cut(s) 21
Bsa29I ATCGAT 1 cut(s) 294
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 2 cut(s) 105, 142
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 3 cut(s) 149, 220, 284
Bse118I RCCGGY 1 cut(s) 191
BseBI CCWGG 2 cut(s) 106, 144
BseCI ATCGAT 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 105, 142
BseGI GGATG 2 cut(s) 12, 368
BseLI CCNNNNNNNGG 3 cut(s) 149, 220, 284
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 1 cut(s) 50
Bsh1236I CGCG 2 cut(s) 227, 346
BshFI GGCC 1 cut(s) 195
BshVI ATCGAT 1 cut(s) 294
BsiHKAI GWGCWC 2 cut(s) 187, 207
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 1 cut(s) 192
BslI CCNNNNNNNGG 3 cut(s) 149, 220, 284
BsnI GGCC 1 cut(s) 195
BsoBI CYCGRG 1 cut(s) 197
Bsp1286I GDGCHC 3 cut(s) 143, 187, 207
Bsp143I GATC 6 cut(s) 209, 228, 241, 246, 274, 291
BspACI CCGC 2 cut(s) 307, 346
BspANI GGCC 1 cut(s) 195
BspDI ATCGAT 1 cut(s) 294
BspFNI CGCG 2 cut(s) 227, 346
BspLI GGNNCC 1 cut(s) 276
BspMAI CTGCAG 1 cut(s) 222
BspPI GGATC 3 cut(s) 204, 269, 282
BspTI CTTAAG 1 cut(s) 335
BsrFI RCCGGY 1 cut(s) 191
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 2 cut(s) 105, 142
BssMI GATC 6 cut(s) 209, 228, 241, 246, 274, 291
BssNI GRCGYC 1 cut(s) 252
Bst2UI CCWGG 2 cut(s) 106, 144
Bst4CI ACNGT 2 cut(s) 46, 51
BstACI GRCGYC 1 cut(s) 252
BstAFI CTTAAG 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 6, 10
BstF5I GGATG 2 cut(s) 12, 368
BstFNI CGCG 2 cut(s) 227, 346
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 6 cut(s) 212, 231, 244, 249, 277, 294
BstMBI GATC 6 cut(s) 209, 228, 241, 246, 274, 291
BstNI CCWGG 2 cut(s) 106, 144
BstSCI CCNGG 2 cut(s) 104, 142
BstSFI CTRYAG 2 cut(s) 42, 218
BstUI CGCG 2 cut(s) 227, 346
BstV1I GCAGC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
Bsu15I ATCGAT 1 cut(s) 294
BsuRI GGCC 1 cut(s) 195
BsuTUI ATCGAT 1 cut(s) 294
BtsCI GGATG 2 cut(s) 12, 368
Cac8I GCNNGC 2 cut(s) 6, 10
CfoI GCGC 1 cut(s) 227
Cfr10I RCCGGY 1 cut(s) 191
ClaI ATCGAT 1 cut(s) 294
CseI GACGC 1 cut(s) 241
Csp6I GTAC 1 cut(s) 47
CviJI RGCY 7 cut(s) 41, 110, 141, 155, 168, 185, 195
CviKI_1 RGCY 7 cut(s) 41, 110, 141, 155, 168, 185, 195
CviQI GTAC 1 cut(s) 47
DpnI GATC 6 cut(s) 211, 230, 243, 248, 276, 293
DpnII GATC 6 cut(s) 209, 228, 241, 246, 274, 291
Ecl136II GAGCTC 1 cut(s) 185
Eco24I GRGCYC 2 cut(s) 143, 187
Eco53kI GAGCTC 1 cut(s) 185
Eco88I CYCGRG 1 cut(s) 197
EcoICRI GAGCTC 1 cut(s) 185
EcoRII CCWGG 2 cut(s) 104, 142
EcoT38I GRGCYC 2 cut(s) 143, 187
Fnu4HI GCNGC 2 cut(s) 39, 308
FriOI GRGCYC 2 cut(s) 143, 187
Fsp4HI GCNGC 2 cut(s) 39, 308
GlaI GCGC 1 cut(s) 226
GluI GCNGC 2 cut(s) 39, 308
HaeIII GGCC 1 cut(s) 195
HapII CCGG 1 cut(s) 192
HgaI GACGC 1 cut(s) 241
HhaI GCGC 1 cut(s) 227
Hin1I GRCGYC 1 cut(s) 252
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HinfI GANTC 3 cut(s) 267, 312, 341
HpaII CCGG 1 cut(s) 192
HphI GGTGA 3 cut(s) 61, 134, 311
Hpy188I TCNGA 2 cut(s) 246, 317
Hpy188III TCNNGA 1 cut(s) 130
Hpy99I CGWCG 2 cut(s) 175, 257
HpyAV CCTTC 3 cut(s) 278, 296, 323
HpyCH4III ACNGT 2 cut(s) 46, 51
HpyCH4V TGCA 3 cut(s) 4, 38, 220
Hsp92I GRCGYC 1 cut(s) 252
HspAI GCGC 1 cut(s) 225
Kzo9I GATC 6 cut(s) 209, 228, 241, 246, 274, 291
LmnI GCTCC 2 cut(s) 152, 202
LpnPI CCDG 6 cut(s) 91, 118, 129, 156, 205, 206
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 1 cut(s) 21
MaeIII GTNAC 2 cut(s) 67, 259
MalI GATC 6 cut(s) 211, 230, 243, 248, 276, 293
MboI GATC 6 cut(s) 209, 228, 241, 246, 274, 291
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 3 cut(s) 143, 187, 207
MluCI AATT 2 cut(s) 63, 83
MlyI GAGTC 3 cut(s) 276, 321, 350
MmeI TCCRAC 1 cut(s) 295
MseI TTAA 1 cut(s) 336
MspCI CTTAAG 1 cut(s) 335
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 2 cut(s) 106, 144
MvaI CCWGG 2 cut(s) 106, 144
MvnI CGCG 2 cut(s) 227, 346
NdeII GATC 6 cut(s) 209, 228, 241, 246, 274, 291
NlaIV GGNNCC 1 cut(s) 276
NmeAIII GCCGAG 1 cut(s) 206
NmuCI GTSAC 2 cut(s) 67, 259
PaeR7I CTCGAG 1 cut(s) 197
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PflMI CCANNNNNTGG 1 cut(s) 149
PkrI GCNGC 2 cut(s) 40, 309
PleI GAGTC 3 cut(s) 275, 320, 349
PpsI GAGTC 3 cut(s) 275, 320, 349
Psp124BI GAGCTC 1 cut(s) 187
Psp6I CCWGG 2 cut(s) 104, 142
PspGI CCWGG 2 cut(s) 104, 142
PspN4I GGNNCC 1 cut(s) 276
PspXI VCTCGAGB 1 cut(s) 197
PstI CTGCAG 1 cut(s) 222
PsuI RGATCY 1 cut(s) 274
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
SacI GAGCTC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 2 cut(s) 39, 308
Sau3AI GATC 6 cut(s) 209, 228, 241, 246, 274, 291
SchI GAGTC 3 cut(s) 276, 321, 350
ScrFI CCNGG 2 cut(s) 106, 144
SduI GDGCHC 3 cut(s) 143, 187, 207
SetI ASST 9 cut(s) 43, 74, 107, 117, 129, 157, 187, 334, 359
SfaNI GCATC 1 cut(s) 21
SfcI CTRYAG 2 cut(s) 42, 218
Sfr274I CTCGAG 1 cut(s) 197
SlaI CTCGAG 1 cut(s) 197
SmlI CTYRAG 2 cut(s) 197, 335
SmoI CTYRAG 2 cut(s) 197, 335
Sse9I AATT 2 cut(s) 63, 83
SsiI CCGC 2 cut(s) 307, 346
SstI GAGCTC 1 cut(s) 187
StyD4I CCNGG 2 cut(s) 104, 142
TaaI ACNGT 2 cut(s) 46, 51
TaqI TCGA 7 cut(s) 129, 198, 255, 270, 282, 294, 324
TasI AATT 2 cut(s) 63, 83
TauI GCSGC 1 cut(s) 310
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseFI GTSAC 2 cut(s) 67, 259
TseI GCWGC 1 cut(s) 38
Tsp45I GTSAC 2 cut(s) 67, 259
Van91I CCANNNNNTGG 1 cut(s) 149
Vha464I CTTAAG 1 cut(s) 335
XapI RAATTY 1 cut(s) 83
XhoI CTCGAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.