FvH4_1g04860

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
2568419 .. 2569456
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04860.t1

Sequence Viewer

Length: 441 bp
ATGGAGGACTTTGTTGCCAAACTTTCTGATCCCAAACTGTCGCTCCTCGACTTCCAGAACCTCTACTTCCATCAGTTCTTGCAGAGCAGGGAGCAGATAACTGCCTTTCCTGGGCAGGATCACCCCCAAAAGGAGATTGATCTAAAAAAGACGTGCGCCAAGAATGAATGGGCAAAAAGAGCCTTGAACTTCAGACCCTATTCAAATGATGATCCGATTGATGAACTTTTTTTGGTGCGAAACTTCATAGCTCACTTCAATCAATGCAGAGCAAAAGATGTTCCTACTCCTCTAGATACCTTCGACAAGGTTCAGATTGGAGAGCGACTAAGCAGCAGTACATCGTTTCGGAGTGGACAAGTATTTGACATAATCCTTTCCGCATCATCATCTAGTTTCTGTTCCAAGTTGAAAGGTCTGATTCTGAGGAATACTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.76

Weight (kDa)

7.72

Isoelectric Point (pI)

31.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 381
AclWI GGATC 3 cut(s) 23, 126, 206
AcuI CTGAAG 1 cut(s) 175
AfaI GTAC 1 cut(s) 340
AfiI CCNNNNNNNGG 2 cut(s) 111, 130
AgsI TTSAA 4 cut(s) 187, 204, 259, 412
AjiI CACGTC 1 cut(s) 153
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 1 cut(s) 251
AluI AGCT 1 cut(s) 251
AlwI GGATC 3 cut(s) 23, 126, 206
ApeKI GCWGC 1 cut(s) 333
AspLEI GCGC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 113
BbvI GCAGC 1 cut(s) 345
BccI CCATC 1 cut(s) 78
BciT130I CCWGG 1 cut(s) 111
BfaI CTAG 2 cut(s) 293, 393
BisI GCNGC 1 cut(s) 334
BlsI GCNGC 1 cut(s) 335
Bme1390I CCNGG 1 cut(s) 111
BmgBI CACGTC 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 111
BmsI GCATC 1 cut(s) 392
BsaJI CCNNGG 1 cut(s) 110
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 130
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 110
BseLI CCNNNNNNNGG 2 cut(s) 111, 130
BseMII CTCAG 1 cut(s) 416
BseRI GAGGAG 2 cut(s) 35, 279
BseXI GCAGC 1 cut(s) 345
BslI CCNNNNNNNGG 2 cut(s) 111, 130
Bsp143I GATC 4 cut(s) 28, 118, 139, 211
BspACI CCGC 1 cut(s) 381
BspCNI CTCAG 1 cut(s) 417
BspPI GGATC 3 cut(s) 23, 126, 206
BssECI CCNNGG 1 cut(s) 110
BssMI GATC 4 cut(s) 28, 118, 139, 211
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 2 cut(s) 39, 436
BstDEI CTNAG 2 cut(s) 329, 425
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 4 cut(s) 31, 121, 142, 214
BstMBI GATC 4 cut(s) 28, 118, 139, 211
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 109
BstV1I GCAGC 1 cut(s) 345
BtrI CACGTC 1 cut(s) 153
CfoI GCGC 1 cut(s) 158
Csp6I GTAC 1 cut(s) 339
CviJI RGCY 2 cut(s) 182, 251
CviKI_1 RGCY 2 cut(s) 182, 251
CviQI GTAC 1 cut(s) 339
DdeI CTNAG 2 cut(s) 329, 425
DpnI GATC 4 cut(s) 30, 120, 141, 213
DpnII GATC 4 cut(s) 28, 118, 139, 211
Eco57I CTGAAG 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 109
FaiI YATR 2 cut(s) 248, 371
Fnu4HI GCNGC 1 cut(s) 334
Fsp4HI GCNGC 1 cut(s) 334
FspBI CTAG 2 cut(s) 293, 393
GlaI GCGC 1 cut(s) 157
GluI GCNGC 1 cut(s) 334
HhaI GCGC 1 cut(s) 158
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HinfI GANTC 1 cut(s) 421
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 356
Hpy188I TCNGA 7 cut(s) 28, 194, 216, 315, 351, 420, 426
Hpy188III TCNNGA 2 cut(s) 55, 293
Hpy8I GTNNAC 1 cut(s) 356
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 2 cut(s) 39, 436
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 2 cut(s) 82, 267
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 2 cut(s) 329, 425
HpySE526I ACGT 1 cut(s) 152
HspAI GCGC 1 cut(s) 156
Kzo9I GATC 4 cut(s) 28, 118, 139, 211
LmnI GCTCC 2 cut(s) 48, 91
LpnPI CCDG 5 cut(s) 68, 73, 96, 101, 123
Lsp1109I GCAGC 1 cut(s) 345
LweI GCATC 1 cut(s) 392
MaeI CTAG 2 cut(s) 293, 393
MaeII ACGT 1 cut(s) 152
MalI GATC 4 cut(s) 30, 120, 141, 213
MboI GATC 4 cut(s) 28, 118, 139, 211
MnlI CCTC 4 cut(s) 56, 71, 300, 420
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 4 cut(s) 28, 118, 139, 211
PfeI GAWTC 1 cut(s) 421
PkrI GCNGC 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
RsaI GTAC 1 cut(s) 340
RsaNI GTAC 1 cut(s) 339
SatI GCNGC 1 cut(s) 334
Sau3AI GATC 4 cut(s) 28, 118, 139, 211
ScrFI CCNGG 1 cut(s) 111
SetI ASST 6 cut(s) 63, 155, 253, 302, 312, 418
SfaNI GCATC 1 cut(s) 392
SsiI CCGC 1 cut(s) 381
SspMI CTAG 2 cut(s) 293, 393
StyD4I CCNGG 1 cut(s) 109
TaaI ACNGT 2 cut(s) 39, 436
TaiI ACGT 1 cut(s) 155
TaqI TCGA 2 cut(s) 48, 303
TatI WGTACW 1 cut(s) 338
TfiI GAWTC 1 cut(s) 421
TseI GCWGC 1 cut(s) 333
TspDTI ATGAA 3 cut(s) 180, 235, 237
XbaI TCTAGA 1 cut(s) 292
XspI CTAG 2 cut(s) 293, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.