Rh5CG152500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000544
Physical Location & Seq
Reverse (-)
14142650 .. 14143192
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG152500.1

Sequence Viewer

Length: 456 bp
ATGCATCCACACACACACAATTTCCACCTGTTTTTCCAGACGGAGGAGGAACTATGCGATTTCCCTGCCATGGCAGTGTGGAATTTGCTCAACATTAAATTCGACCATGAAGGCTTCAAAGAAAATTGGACTGATGCTTATACCCGATGGGATGCTTGGCGTTCGAGGAGTGACATAGACTTGTTTTGGACCTACTGGGAGGATGATTACTTCTGGAGAGCTTATTGCTTCAGGCATTATGAGGATGAAGCAGAGCTGGTTAGAAATGGTATTACGCACTTTAACGAAAATGTAATGAAAGACGTGCCCCCTCCTGATGATTTCTTCAACAAACGCCAAATAGGAGAGGTCGTTCTTGATCTCTTCCCAGATGTCTCCTTCAGACTGTTCGATTTTATGTGGGACAATGATGTGAATATGGACTTCACCATGTCCCGCACATGTTACAGCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

18.67

Weight (kDa)

4.55

Isoelectric Point (pI)

51.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 436
AcsI RAATTY 2 cut(s) 82, 98
AcuI CTGAAG 2 cut(s) 214, 364
AfiI CCNNNNNNNGG 2 cut(s) 43, 70
AflIII ACRYGT 1 cut(s) 440
AgsI TTSAA 2 cut(s) 118, 328
AjiI CACGTC 1 cut(s) 304
AloI GAACNNNNNNTCC 2 cut(s) 336, 368
AluBI AGCT 2 cut(s) 221, 256
AluI AGCT 2 cut(s) 221, 256
Alw26I GTCTC 1 cut(s) 379
ApoI RAATTY 2 cut(s) 82, 98
AspS9I GGNCC 1 cut(s) 189
AsuHPI GGTGA 1 cut(s) 418
AvaII GGWCC 1 cut(s) 189
BaeGI GKGCMC 1 cut(s) 309
BccI CCATC 1 cut(s) 141
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BcoDI GTCTC 1 cut(s) 379
Bme18I GGWCC 1 cut(s) 189
BmgBI CACGTC 1 cut(s) 304
BmgT120I GGNCC 1 cut(s) 189
BmrI ACTGGG 1 cut(s) 205
BmsI GCATC 3 cut(s) 13, 124, 142
BmuI ACTGGG 1 cut(s) 205
BpmI CTGGAG 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 70
Bse1I ACTGG 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 4 cut(s) 4, 157, 208, 250
BseLI CCNNNNNNNGG 2 cut(s) 43, 70
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 2 cut(s) 59, 181
BseSI GKGCMC 1 cut(s) 309
BslFI GGGAC 2 cut(s) 416, 418
BslI CCNNNNNNNGG 2 cut(s) 43, 70
BsmAI GTCTC 1 cut(s) 379
BsmFI GGGAC 2 cut(s) 416, 418
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 1 cut(s) 358
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 1 cut(s) 436
BsrI ACTGG 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 1 cut(s) 358
BssT1I CCWWGG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 387
Bst6I CTCTTC 1 cut(s) 368
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 4 cut(s) 4, 157, 208, 250
BstKTI GATC 1 cut(s) 361
BstMAI GTCTC 1 cut(s) 379
BstMBI GATC 1 cut(s) 358
BstNSI RCATGY 1 cut(s) 444
BstSLI GKGCMC 1 cut(s) 309
BtgI CCRYGG 1 cut(s) 69
BtrI CACGTC 1 cut(s) 304
BtsCI GGATG 4 cut(s) 4, 157, 208, 250
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 189
CviAII CATG 4 cut(s) 70, 107, 430, 441
CviJI RGCY 3 cut(s) 114, 221, 256
CviKI_1 RGCY 3 cut(s) 114, 221, 256
DpnI GATC 1 cut(s) 360
DpnII GATC 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 368
EarI CTCTTC 1 cut(s) 368
Eco130I CCWWGG 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 189
Eco57I CTGAAG 2 cut(s) 214, 364
EcoT14I CCWWGG 1 cut(s) 69
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 4 cut(s) 73, 110, 433, 444
FaqI GGGAC 2 cut(s) 416, 418
FatI CATG 4 cut(s) 69, 106, 429, 440
FauI CCCGC 1 cut(s) 443
FokI GGATG 3 cut(s) 164, 215, 257
GsuI CTGGAG 1 cut(s) 235
Hin1II CATG 4 cut(s) 73, 110, 433, 444
HphI GGTGA 1 cut(s) 418
Hpy188I TCNGA 1 cut(s) 383
Hpy188III TCNNGA 4 cut(s) 37, 214, 314, 356
HpyAV CCTTC 2 cut(s) 104, 388
HpyCH4III ACNGT 1 cut(s) 387
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 1 cut(s) 4
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 4 cut(s) 73, 110, 433, 444
Kzo9I GATC 1 cut(s) 358
LpnPI CCDG 9 cut(s) 41, 50, 78, 181, 199, 217, 242, 327, 381
LweI GCATC 3 cut(s) 13, 124, 142
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 2 cut(s) 170, 443
MalI GATC 1 cut(s) 360
MboI GATC 1 cut(s) 358
MboII GAAGA 2 cut(s) 316, 355
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 4 cut(s) 19, 82, 98, 124
MnlI CCTC 7 cut(s) 37, 40, 159, 193, 235, 321, 340
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 96, 282
MslI CAYNNNNRTG 1 cut(s) 74
NcoI CCATGG 1 cut(s) 69
NdeII GATC 1 cut(s) 358
NlaIII CATG 4 cut(s) 73, 110, 433, 444
NmuCI GTSAC 1 cut(s) 170
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 444
PciI ACATGT 1 cut(s) 440
PscI ACATGT 1 cut(s) 440
PspPI GGNCC 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 2 cut(s) 96, 282
Sau3AI GATC 1 cut(s) 358
Sau96I GGNCC 1 cut(s) 189
SduI GDGCHC 1 cut(s) 309
SetI ASST 6 cut(s) 30, 194, 223, 258, 306, 351
SfaNI GCATC 3 cut(s) 13, 124, 142
SinI GGWCC 1 cut(s) 189
SmiMI CAYNNNNRTG 1 cut(s) 74
Sse9I AATT 4 cut(s) 19, 82, 98, 124
SsiI CCGC 1 cut(s) 436
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 387
TaiI ACGT 1 cut(s) 306
TaqI TCGA 3 cut(s) 102, 164, 390
TasI AATT 4 cut(s) 19, 82, 98, 124
Tru1I TTAA 2 cut(s) 96, 282
Tru9I TTAA 2 cut(s) 96, 282
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 3 cut(s) 123, 261, 311
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 1 cut(s) 81
VpaK11BI GGWCC 1 cut(s) 189
XapI RAATTY 2 cut(s) 82, 98
XceI RCATGY 1 cut(s) 444
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.